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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0134400 |
| Transcript ID | LotjaGi1g1v0134400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein; TAIR: AT2G27610.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q9ZUW3|PP172_ARATH Pentatricopeptide repeat-containing protein At2g27610; TrEMBL-Plants: tr|A0A1J7ID78|A0A1J7ID78_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0134400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:21664715..21669351) extracted from Lotus japonicus Gifu genome v1.2.
AAGACTCGAGTAGTTTATTTTAACGGATAACGGTATTTATTCTAGTTTCGCACCTCCACTAAGCGATTGGTTGGGACACT GGTTATCCGTTCTCTTCCCTTCCACAATTTTTAATCCAAGCAACAACAGGATATTTCCAACCCAACCCAATCAACCATGC AAGCAGTTGTGAGTTTCTGCTATCATTCCCGCAATTCTCCCCTCACAGCCATACCCTGAGTGACTGAGTCTGCCATGGCT TCTTTACCTTCTGTTGCTGTTACTGCCACTCTTAAGCTCCACCCACAATTCAAAAAATACCCCCCAAGCTCCATTCCCAT AGATAAGGTACCCTTTTTTATCCACTTTCATATTTTGGTGTATTGTGTGCAGCCATTTTTCTATCTATTGATAACATATA GTCATAGATAATATATAATTGGACATACCTTACCTCCTGTATAGTGAGCACTAGTACAAAATTATAATTATTAACAAAAT AAAAATTTCAGTGGTTAATTGTTTACACTGCTCAGAAATGTGTTTGTACACCAATTAAGTTTAAGTTCAACGTGAACAAA CTTTCATTGCAATCCATAAAATGAGTTATATTCACATCTTATTTTAAAGTGTGCTAAATTCTATTTACATCAGTGTCAAC CGATCATTGAAATATATTTAGATGTCAAGGGTCTAGTTGAGTAGCTGTGACGAGTAAGTGTATGTGTCTGGACTTTGAAT TTCTGTTAAACTCAACGCTGATTCATGTTTAAGTCAAAGTGCTAAAATCTTGCTTCTTCGTTCTTCGTTCATGTGTTAGG ATGTGTATTTTGCTTGCCATTTAGCCATGTACAATAATAAACCTATGCTATTCACCACAAGCCCTCCCTAGTAGGATTGG AGATGTCATGTTCCTGCCACTTAATCCACCAAAAAATAGAATTATACTAATCTGGTCTGGTCTACTTAATTTGATATTAA CCTGCAGCTTATGCTTTCAGGGTCAAAACATTTCTTTGCAGAAAAGCCACAAATTCAACACTCATTTGGATCCCAGCAGG TATCGGGGTTTTCAGGAAGCACTTTCACTGGCCAAAGAAGGGACAGAGGAGGTGGACTCATCTTTCTACATTCCCTTGCT GCAACAATGCATAGACAAGAGGTCCTTTTCAGACACACAAATTGTTCATGGCCACATCATGAAAACGGGTAACCACGAAG ACGTTTTCGTGGTGTCATATCTGGTCAGTGTTTACTCCAAATGTGGGAACATGGAGGATGCTCGAAGAGCCTTCGATCAC ATGCCCAGAAGAAACGTGGTCGCCTGGACCACGTTAATGCTGGGCTATGTGCAGAACTCGCGGCCAAAGCACGCCTTTCA TGTGTTTGATGAAATGTTACATACAGGGAGTTACCCTTCCATGAACACTCTAGCTATAGCTCTAAATGCTTGTACATCCT TGAAGTCTTTGAAGTCAGGTGAACAGTTACATGCTTACATAATCAAATACCATATTGACTTTGACACCAGTGTTGGCAAT GCACTTTGTAGTTTGTACTCCAAATGTGGCAGGTTGGAATTTGCTCTGAAAGCATTTAAGAGAATCAAGGAAAAGAATGT TATTTCATGGACTGCAGCTATTTCTTCTTGTGGGGACAGTGGTAAAGCTAAGAAGGGTTTAAGAATTTTTGTTGAGATGC TTTCTGAGAACATGCAGCCTAATGAGTACACTTTGACTAGTGTCCTCAGCCAGTGTTGTGAAATTCAGTTCTTAGAACTT GGGACTCAGGTTCATTCGATGTGTACTAAATTGGGCTATGAATCAAACCTACGTGTAAGGAATTCTTTGCTGTATTTGTA CCTCAAACGTGGTTGTATTGGTGAGGCTCAAATTCTGTTTAAAGGAATGGACGATGCCAGTTTGGTTACATGGAACGCGA TGATTGCAGGGCATGCAAAAATGATGGAACAGTCAAGGGATAATCTTTATGCATGCTGGAATGGAACCGAAGCACTCAAC CTTTTTTCCAAGTTGAATTGCTCAGGCATGAAACTTGATCTATTTACCTTCTCAAGTGTACTAAGTGTTTGTGGTAGAAT GGTTGCTTTTGTGCAGGGAGAACAAATTCATGCTCAGACCATCAAAACCGGGTTCTTATCAGATGTGATTGTAGGAACTT CACTAATTAACATGTACATTAAATGTGCAAGCGTTGAGAGCGCAAGCAAAGCGTTTCTGGAGATGTCTACTAGAACTTTG ATATCATGGACTTCCATAATCACAGGTTTTGCACAGCATGGTAGGTCACAGCAAGCATTGCATCTTTTTGAGGATATGAA ACTAGCTAGAGTTAGACCAAACCAGGTCACTTTTGTTGGTGTTTTGTCAGCATGTAGTCGCGCCGGCATGGTCAGTGAAG CATTTAATCACTTTAAGATCATGCAAAAGGAGTATAAAATTAAGCCTGTGATGGAACATTACACTTGCTTGGTCGATATG TTAGTGAGGTTGGGTCGGGTGGAGGAAGCTTTCGATTTGATTAAGAAAATGGATTATGAGCCTAGTGAGTTTATTTGGTC AAATTTGATTGTTGGTTGTAGAAGTCATGGGAATCTGGAACTAGGGTATCATGCTGCTGAAAAGTTACTAAGTCTCAAAC CAAAAGATCCTGAGACATATGTGTTGTTGTTGAATATGTACCACTCAGCTGGGAGATTTGAGGATGTGTCTAGGGTGAGA AGGATAATGAAAGAGGAAAAGGTTGAAAAATTAAAGGATTGGAGCTGGATTAGCATCAAAGACAAAGTGTACTCATTTGA AGCAAATGACATAGCACACCCACATAATTCACTAGTATGTAAATCATCGGAGGATTTACTGGTGAAAGCTAAGAATCTTG GATATGAGATGCTAGAAAGTTTGGAAATAAGTGAAGAAGAGGAGGGGGAAAATACATCCTCCCTTACCATTTATCACAGT GAGAAGCTGGCTATTACATTTGGTTTGGAGAATTTGCCAAACTTCTCACCAGTAAGAGTTGTCAAGAGTACCATAATGTG CAGGGATTCCCATAATTTTATTAAGTATGTCTCAATACTGAGTGGTAGGGAAATCATTGTTAAAGATAGAAAGAGGCTTC ATAAATTTGTCAATGGAGAATGCTCATGTGGAGAATTTGGTGGTTTTCTCTGATATCCTCCAAGCAGCAGCTAAAGTTTT TACCAATCAAAAGCTGACTATCAAAAGCTGATACATTTTTTACACCTCTCTACACTTACTAATAACATGTTACTCTACAT TGACAAGTTTTAAATTGAAAAAAGATATTTCTTCAGCCAAGAGTGTATATAACTATGTACCTTGGTAGAAACAGAGGGAT AGAAAGAAAATAGAAAAAGTGAGATTTGTGATATATGATGTAGGCGGAAATGAAGAGGAAATAAGTGTAAGGTGCATGTA AAATTTGGACCATGATTTGTAGTGGTAACTGAACCTGAAATAAGATTTGTACAATTCAAGCAAAAATTGCAATCTTTGAC TATAAGAGTTGGATACATTGTAATGGTAGGAACATAAAAGATAAAAAGAAATTATTTTTTTTTGAAACTAGATAAAAAGA AATTTACAAATACCAACCTTACAAAGTTGTAGATAATTTCTTTTTTAATTACACCTGACTCCATTTTCTGTGACACTTCC TCTAAAATATATATATCTTACATAACTAGACCTTTTTCTTCTTTTCTTTTCCATAAGAGTCAAAGATTCCACAGGTGATG AAACTACTTCCTTTTGCTTTTATTCTTGGAGACCTTTAACTTGCTTGTTTCAGTAGGTGGTCTCCAGATTATATCCTCAA GATTGCTAGAAAAGTTCTTGTAGAACTGCAACATGGAGGAGGTACATTTTTTGTCATAAACCAAAATACAGGATGCTGAG TGGAAGAAAGATGAGGTCACACTAAACCATGAAAGCTTGTCTCTCAAAAACTGACCTTGAGATATTCATCTGCATCTCCA GCTGCTTTCTGAATGTCCACCATGAAAAATGTTGGAGCAACTTCAAAAACCTTTTAAACGAAAAAAGGGAAAAGGAGTTC AGAAAGTTATGAATTAAATTGTTCTTCAAAATATTTAGGGACTGTAGTGGAGAAATAAACTTACTCCCAGCATAACTGAG AAATAAGAAGTTTTATTTGCTGAAATACCCTCTATTCTCATCTGAAAATTCAGACCAAAATCATTCACATCAGTTTAATT AAAATTAAAAAAAAATGGCAAAGCTTAATCCTCAGAAGAATTAACAGCAGATGCTAAGTATCTTTATGTTGATTTTGTAG GATAGACATGAGTAAATGATAAAAAATAATCCAAAACAACAAATGTGGAAGGAAGTGAGAGTGCAAACGGATAAAGCCAT TCACTAATAGGATGTTTGAATTAACTTATTTTTCCTCAAAATCAATTCTGGCACATTTTGGTTTAGAATCAATTATAAAA GGATTTCCAAACATGCTTTAAGTGTGTAGGCTATCAACCTTATAGTTGCGTATATGCGTCTTAAAACCCATTGACTGTGC CACAACTTCCATACTTGATAAAACCACCTTTGCTGGCTTTTGAGTGATGAAGCGTGTTTGGTAGTTCAAAGAGTCCT
CDS sequence (LotjaGi1g1v0134400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTTTCTGAGAACATGCAGCCTAATGAGTACACTTTGACTAGTGTCCTCAGCCAGTGTTGTGAAATTCAGTTCTTAGA ACTTGGGACTCAGGTTCATTCGATGTGTACTAAATTGGGCTATGAATCAAACCTACGTGTAAGGAATTCTTTGCTGTATT TGTACCTCAAACGTGGTTGTATTGGTGAGGCTCAAATTCTGTTTAAAGGAATGGACGATGCCAGTTTGGTTACATGGAAC GCGATGATTGCAGGGCATGCAAAAATGATGGAACAGTCAAGGGATAATCTTTATGCATGCTGGAATGGAACCGAAGCACT CAACCTTTTTTCCAAGTTGAATTGCTCAGGCATGAAACTTGATCTATTTACCTTCTCAAGTGTACTAAGTGTTTGTGGTA GAATGGTTGCTTTTGTGCAGGGAGAACAAATTCATGCTCAGACCATCAAAACCGGGTTCTTATCAGATGTGATTGTAGGA ACTTCACTAATTAACATGTACATTAAATGTGCAAGCGTTGAGAGCGCAAGCAAAGCGTTTCTGGAGATGTCTACTAGAAC TTTGATATCATGGACTTCCATAATCACAGGTTTTGCACAGCATGGTAGGTCACAGCAAGCATTGCATCTTTTTGAGGATA TGAAACTAGCTAGAGTTAGACCAAACCAGGTCACTTTTGTTGGTGTTTTGTCAGCATGTAGTCGCGCCGGCATGGTCAGT GAAGCATTTAATCACTTTAAGATCATGCAAAAGGAGTATAAAATTAAGCCTGTGATGGAACATTACACTTGCTTGGTCGA TATGTTAGTGAGGTTGGGTCGGGTGGAGGAAGCTTTCGATTTGATTAAGAAAATGGATTATGAGCCTAGTGAGTTTATTT GGTCAAATTTGATTGTTGGTTGTAGAAGTCATGGGAATCTGGAACTAGGGTATCATGCTGCTGAAAAGTTACTAAGTCTC AAACCAAAAGATCCTGAGACATATGTGTTGTTGTTGAATATGTACCACTCAGCTGGGAGATTTGAGGATGTGTCTAGGGT GAGAAGGATAATGAAAGAGGAAAAGGTTGAAAAATTAAAGGATTGGAGCTGGATTAGCATCAAAGACAAAGTGTACTCAT TTGAAGCAAATGACATAGCACACCCACATAATTCACTAGTATGTAAATCATCGGAGGATTTACTGGTGAAAGCTAAGAAT CTTGGATATGAGATGCTAGAAAGTTTGGAAATAAGTGAAGAAGAGGAGGGGGAAAATACATCCTCCCTTACCATTTATCA CAGTGAGAAGCTGGCTATTACATTTGGTTTGGAGAATTTGCCAAACTTCTCACCAGTAAGAGTTGTCAAGAGTACCATAA TGTGCAGGGATTCCCATAATTTTATTAAGTATGTCTCAATACTGAGTGGTAGGGAAATCATTGTTAAAGATAGAAAGAGG CTTCATAAATTTGTCAATGGAGAATGCTCATGTGGAGAATTTGGTGGTTTTCTCTGA
Protein sequence (LotjaGi1g1v0134400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLSENMQPNEYTLTSVLSQCCEIQFLELGTQVHSMCTKLGYESNLRVRNSLLYLYLKRGCIGEAQILFKGMDDASLVTWN AMIAGHAKMMEQSRDNLYACWNGTEALNLFSKLNCSGMKLDLFTFSSVLSVCGRMVAFVQGEQIHAQTIKTGFLSDVIVG TSLINMYIKCASVESASKAFLEMSTRTLISWTSIITGFAQHGRSQQALHLFEDMKLARVRPNQVTFVGVLSACSRAGMVS EAFNHFKIMQKEYKIKPVMEHYTCLVDMLVRLGRVEEAFDLIKKMDYEPSEFIWSNLIVGCRSHGNLELGYHAAEKLLSL KPKDPETYVLLLNMYHSAGRFEDVSRVRRIMKEEKVEKLKDWSWISIKDKVYSFEANDIAHPHNSLVCKSSEDLLVKAKN LGYEMLESLEISEEEEGENTSSLTIYHSEKLAITFGLENLPNFSPVRVVKSTIMCRDSHNFIKYVSILSGREIIVKDRKR LHKFVNGECSCGEFGGFL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 98 | 98 | 1.0E-11 | ||
| PANTHER | 8 | 135 | 128 | 1.4E-71 | – | |
| ProSiteProfiles | 9 | 43 | 35 | 6.347 | ||
| ProSiteProfiles | 44 | 78 | 35 | 6.818 | ||
| Pfam | 49 | 72 | 24 | 1.4 | ||
| Gene3D | 99 | 252 | 154 | 1.3E-33 | ||
| ProSiteProfiles | 121 | 155 | 35 | 6.654 | ||
| PANTHER | 140 | 352 | 213 | 1.4E-71 | – | |
| ProSiteProfiles | 156 | 186 | 31 | 6.621 | ||
| ProSiteProfiles | 187 | 221 | 35 | 10.852 | ||
| Pfam | 189 | 234 | 46 | 1.4E-10 | ||
| TIGRFAM | 189 | 222 | 34 | 6.0E-6 | ||
| ProSiteProfiles | 222 | 252 | 31 | 8.254 | ||
| Gene3D | 253 | 418 | 166 | 1.7E-16 | ||
| ProSiteProfiles | 258 | 288 | 31 | 7.454 | ||
| SUPERFAMILY | 259 | 343 | 85 | 2.3E-5 | ||
| Pfam | 261 | 285 | 25 | 2.0E-4 | ||
| TIGRFAM | 262 | 285 | 24 | 1.8E-4 | ||
| ProSiteProfiles | 290 | 320 | 31 | 5.218 | ||
| ProSiteProfiles | 324 | 358 | 35 | 9.065 | ||
| Pfam | 327 | 355 | 29 | 1.0 | ||
| Pfam | 361 | 484 | 124 | 1.8E-23 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of LotjaGi1g1v0134400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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