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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0134900 |
| Transcript ID | LotjaGi1g1v0134900.3 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | TRAF-type zinc finger domain-containing 1; TAIR: AT1G09920.1 TRAF-type zinc finger-like protein; Swiss-Prot: sp|Q6GPH4|XAF1_HUMAN XIAP-associated factor 1; TrEMBL-Plants: tr|I3SBZ7|I3SBZ7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0134900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:21739917..21744349) extracted from Lotus japonicus Gifu genome v1.2.
ATGGGAAAGTTCAATGATGATTGGTGTTTATGTTAATGGTTTCAGTGATCGGGCTATCCCTGCTGCAAATATTGACTTGC ATAGTGTCCATTGCGCCCGGAACCTTGAAAAATGCAAAGTTTGTGGTGATATGGTTCCCAGAAAACATGCAGAGGATCAC TACTTAAGTACTCATGCGCCGGTACGTGAATTTAGGAGAACTGGAATTTTGGTGCTTTGAAATTCCTGCACGTGTGTATG GATACTCAAGTTAGAATTTTAGTTTAACCTTGCAAGCTTCAAAAAAGAAGCACACTAAGATCACATCTAAAGTCTAATGG TTGAAAATCTTTAATGGGTGGATTATCTAATGGATGGATATTTGGATACTTGGCTCATTCATTAATCACCTGGTAAATGA GTTGAACTTAACAAGTCCAGTCAATAAAAATCAATCAATAAGTATATGGATTGTTAAATGGAAATACATGGGTGAGTGCT TGAAGCGGCTTTATCTTGGCTTTCTGTTTTCCCTTATTCCAGAAGCGTGGCTTCTTTAGCAGATTATTAGATATTAGGGT TCAGAAGTAAATAATTTAAAGAATGCGAGTTTGATGGAAAATTTGTTGTAATATTTGCAGAATTGCAGAAGATACTGTGC TAGTTTATCATGTCATGGATATTATATGATGTCTTGCTGTGAATTCTTAAGACAATTTTAAAGTTGTTTTGATATGACAA GAGCATGTAATTGAGGAACCCATGGTATCATTAAAAAGGGAGAATAGGGAAGGAATGAGGAGCCTGAAATATTAACTGGC TAGATATATTATTGCTAATAATAACATCAGTGGTCAACGATGAAATAATTGGGGAAGCTGGGTATACGTCCTCACTAGGA GGCACCACCCGAGGAAGGGACCAACCTTCCAGGCACACTGAAACCATCTTATTGTCAGATTTAAAACCATTGTTACATTT TTTCTTCATTACTAAAAACATGGATTTGTGTAGGTATCCTGTTCATTGTGCAGTGAGACAATGCAGCGTGATATTTTAGA TATCCATAAAGGTGAAAACTGCCCTCAAAGGATTGTCACTTGTGAGTTTTGTGAGTTTCCATTGCCAGCAGTTGATCTGG CCGAGCATCAGGTAGTGCTTAAAAGAGCTTTTCAATTAGGAAAATTTTCATAATATTTGTACTATTGTTCTAATTTTAGT TTGATATTTATACCTTTCAGGAAGTATGTGGGAATCGAACAGAACTTTGTTACCTTTGTAACAAATATGTTAGGCTTCGT GAAAGATTTAGTCATGAAGCTAGATGCAATGGTGTCCAAGATAATACTGTGGGCTCTTCGAGGTGGGAAACCTCCAATTC ATTTGTTATTTTGCTTTATCTTCTCACTTTTACCTTATTTCTCATAGCCTGAATCCTGCAATCTGTTTCGTATTACTGCA TACATATCTACCTCCCACTACACTTACATCGCTATGAAATATTTATATTTTTAGTATTACCAACCATTATGAGGGTTAAG GAATGATTGTCTATGCCAATTATCTTCTATTTGTTTCTAATTTAGGGCCAGCCTATGTAAGTGTTAAGTGTACGATTCCA TTGTTTGTTTTGTACTTGTTAGTTATGGAGTTAATGCTTGCATAGTTATTCAATTTCTAGCTTAGCTTAAAGTATTGACT ACTTCCTTCATTTTAGAGATATAAATTGAATCTTGAGCCTTCACCTAATACTTTAGGGTTTAAGTAAAATTGGTGCCTGG CTTGTTATCATAGCCTTATACTTGATAATTAAGTTGGATATTAGTGCAAGGTTGTGTGGGCCTGTACATTGCCGGCACAC AAAAGCCCAAATGCCTCTTGCATGAGGGTGCATATTAGATGAGGTAAAACCAGTATTGAACCTGCTGCATAACAGCTTAT GCTTTTAAGTGGGCTGGTCCATTACTCCATTACACTTCGTATAACAACATACTGAATCTCCTAATGTTAATTATTTTTGT TTTTGGCATTCATGTTGCTTCTAGAAAATGACCATGATCTCCAATTAAGTGTGATGTTTTGTGTGATTAGCAGTGTTGTC ATAATTGCGAGTTGACTCATAGAGTCGTTCGGGTTTGCAAGTTCAGGTAAGGAAATCGCATCAACTTGTTCATAGACTCG TTTTTTCTGTGACTCGGCTGGAATCGGTCAGAATTGCGAGTGAGGACCGATTTTGCAAGTCTGTAAAAAAAATCTAAACT TATTTGTCTAAACTTTTGAGATATGCGATTAATGAGACTACTAGAGCCTTTATGACCAAGGGTTTTAGAGTTTTATCCTT ATTGCCCCATTCTTATAATAAAAAGTTGAATTCCAGCACAATGTGGTGGCCCTATGTGTTGTCTACACTTCGAGCCAAAA AAGCTTTTGCATGAGGGGATGTGTTAGAGATATAATTTAAAACCATTCACATTTCTCTCACCTAAAAACACAATCATAGC CTATATGACAGTGATCTAGAGTTTGATCCTTATTGCTCTTCTTCTTATATTTAAAAGTTGGATTCCAGCTCAAGGTAGAC GGCTCTATACGCTTCCTGTCCAAGTATCTTGCATGAGAGGAGCATGCTAAAGATATAATATAAAACTTTCATGTTTCTTC TTCTTCTTCACATAAGAGCTTAAACTTTTGGAATAGGTGCATCATGATATAAGCAATTAGGACAAGCTTTCGCATTGCTT ATAAATACTATTTATTATAAATTCATTCAGTTCCCTTCACTAGTAGCTGAAGATTTTGGGAATTCGAACAGAAGATTTAT GACATGGTATTAGAGCTAATGTGCAATCTTGGGCTCAAAATCCCTAGTTTTCTAATTCCAACTGCCACAGATGAGGCTGG ATAATTGGTTGCATTTTCTCAATCATCAAGATGAGGGTCACATCTTGTCTTAGAAGTTTCTAATTGACCATTCCTGCGAG CTTCATTGCCAGATGCTCTAGAATACATCCTACCTTACATATCTTCCTATACATGCCACCATCCCATTCTCCAATTGTCT CGCTCTATTGCTCGCTGGCATCTTCTTGTCCACTTCTAGGGGTCAAGGATCAGTTTGGCCCTATTGAAGCACTAGGTCCT CAGTTTCCTGTCCATAATGATCTTCTTTTAAGATCTACTTTTATGCTTGAGATCTCCTATTTGACTCTTGCTATAATCTG GTCACTGGTCAGATATGGCTTTCACATCGGACTCATCATGGGTTATCTCTAATCCCCAAAAAAGGGCCCTATCTCTTTTG CTTTGTCTAGCACTCCCACTGTAACTTCCGTGAAATTCAATGTTATTAGAGTCTTTATGCCCCTGTAGTCTACAATTTGA TTTTTGGTGCTTGCATTCTAAATAAAAGTTAAATTTCAACACAACTTGCGGTGGATCTGTCCATGCTTCAAACCCAAAGA ACATGTGCGTGAGAATATAAAACCATTTATGTACTTAAAGCCAACAGGTTAAGCTTTTTGGAAGAGTTGGTTCATGACAA GAGCGATAATCTCAATTTTTTGTCAAAATTGTAGATACTGCAACATAATTTAGTTGGAGCTTCATGTTAAACAATAAGCT GCAGCTTAATTGCGAGCCTGAGCTACATAATCGCACTAACTGCAGAAATTCACTCCATTTATTTTCATTGCCTAGAAGCT GTAATTAGTATGACATCTGTCTAATAATACAATCATTTTATTTCTTCTGCAGTAAGTTCCTTATCTCTTACTGTAAGAGT CTTACAGGAAAGTAGCAATTTGCTGTCATTTAGTAGTGATATGGTGCCACACTGTTCTAACCAGCATAACCCTCTTCAAC ACTGTTCTAACCGGCATAACCCTCTTCACCAAGTAAAAATGGATGAAAATCTTCCCCCGGTTGTGGCAAAGTAGATTGTG TTCTAAGAATCTGAGCATATATTGATTGAATGCGTGAATGAATGAAATAATTTATTCCTATTGATAGTCAGACAGATGCT AGACAAAGTTATGAATAAGAATTTATCATCTGCATAATGTTTGACATCCAGCTAGTATTTTATGTTTGATTTCACCATTG AAGTAAATGAATCAAGAAACATGAGTATTGTTATTGAATTTCTGAAATTAGAATTATGGTACATCTCCCTCTTAGCATCT CATGAATGTAACAACTTATTTCTATCCTTTTTGTCATGTTTCCCAATGTGTTTCTCACTTCCTCCTTGTAATTGAGCTAT TTACTTGTGTTTTGTTTGAAGGAATGTGAGAGAAGCCGAGAGAGACGAAGGTCCTCCTCGAAGAAGGCCTAGGCCACAGC AGAATGACTTCTCAACTAGGCGTCTTCTGATCACAATAGCCATCACTGGTATTGCTGTTATACTGGGATCTATTTTTCTG CAGAAGAAGGCAGAGCCTAGTGATGTGCATTAA
CDS sequence (LotjaGi1g1v0134900.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGATTGGTGTTTATGTTAATGGTTTCAGTGATCGGGCTATCCCTGCTGCAAATATTGACTTGCATAGTGTCCATTG CGCCCGGAACCTTGAAAAATGCAAAGTTTGTGGTGATATGGTTCCCAGAAAACATGCAGAGGATCACTACTTAAGTACTC ATGCGCCGGTATCCTGTTCATTGTGCAGTGAGACAATGCAGCGTGATATTTTAGATATCCATAAAGGTGAAAACTGCCCT CAAAGGATTGTCACTTGTGAGTTTTGTGAGTTTCCATTGCCAGCAGTTGATCTGGCCGAGCATCAGGAAGTATGTGGGAA TCGAACAGAACTTTGTTACCTTTGTAACAAATATGTTAGGCTTCGTGAAAGATTTAGTCATGAAGCTAGATGCAATGGTG TCCAAGATAATACTGTGGGCTCTTCGAGGAATGTGAGAGAAGCCGAGAGAGACGAAGGTCCTCCTCGAAGAAGGCCTAGG CCACAGCAGAATGACTTCTCAACTAGGCGTCTTCTGATCACAATAGCCATCACTGGTATTGCTGTTATACTGGGATCTAT TTTTCTGCAGAAGAAGGCAGAGCCTAGTGATGTGCATTAA
Protein sequence (LotjaGi1g1v0134900.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMIGVYVNGFSDRAIPAANIDLHSVHCARNLEKCKVCGDMVPRKHAEDHYLSTHAPVSCSLCSETMQRDILDIHKGENCP QRIVTCEFCEFPLPAVDLAEHQEVCGNRTELCYLCNKYVRLRERFSHEARCNGVQDNTVGSSRNVREAERDEGPPRRRPR PQQNDFSTRRLLITIAITGIAVILGSIFLQKKAEPSDVH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 170 | 170 | - | – | |
| PANTHER | 9 | 199 | 191 | 2.5E-113 | – | |
| PANTHER | 9 | 199 | 191 | 2.5E-113 | – | |
| Gene3D | 56 | 111 | 56 | 1.2E-8 | ||
| MobiDBLite | 140 | 165 | 26 | - | – | |
| MobiDBLite | 143 | 164 | 22 | - | – | |
| TMHMM | 166 | 188 | 23 | - | – | |
| Phobius | 171 | 189 | 19 | - | – | |
| Phobius | 190 | 199 | 10 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0134900.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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