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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0136600 |
| Transcript ID | LotjaGi1g1v0136600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Hydroxyproline-rich glycoprotein family protein, putative; TAIR: AT4G24500.1 hydroxyproline-rich glycoprotein family protein; Swiss-Prot: sp|Q9JKS4|LDB3_MOUSE LIM domain-binding protein 3; TrEMBL-Plants: tr|I1MB09|I1MB09_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0136600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:22249820..22253201) extracted from Lotus japonicus Gifu genome v1.2.
CTTATCATGGGTCCTCCTTTATTGGGTTTTTAACACTCATTAAACTTGACCCGAATCCAATAGGTTTAAAATAAACCAAA ACACCTCAGAACACACACAACCCGTGGCTACTCTGCTCGTGCGTGCTCGTTCGCCGTCGCTCTCCCCGCCGTCGCTCTCT CCGCGCCACCGCAACTCGTAAGAACCCTAACTCCCATAAATTTCTTTTCCCTTTTCAATTTCTTTTCATATTTTATCCAT GTTGCAATGCAATAGAAACCCCGATTTACAAGCACTCAAATTTTCACAATGCGAATAGCTTGATTTTCACCATACCACAC TATTGATCGCTTTGATTTTTTTTACTGAGATTGTCTCAAATCAATGGAAAATGTATTGGAATTTGTTTTAGGGTTTGTTT TAATGTTTGCTTTGTTGAAATTTGAATGTTTGAAAATTTTGTTCTATTTTAGTTTATAGTAAAGGTTGCTATTACCCCCT TTTCATGATATATTCCAACTATAAGAAAAAGATTGTAGCTTTTGCAGGTTTGCTTGTGTGGGTGGGTTTGAGTTTCTGTG TGTATGATGAAATTGAAGACTATGTTGTAATTTCTAGTTGTGTTTGTGAGTGGACAAGTTTTAGGCCCCGTTTGGAAGAG CTTATTTGAGCTTATCTGATAGCATAGCCCGTGTTTGGGAGAGCTTATGTTTGCAAACAGCTTATGTTTTGAGCTTATTT TCATAAGCTACTCAGGATAGCTTATGAAAAATAGTTTATGCTTATATATAGCTTATTTTCAATTTATTTAAATATTTTTT TTAAAATAGCTTAATTAAGCTGTTTTTCCAATGGGACCTTAATTTTGACCTTGTTATCTTTGGCATTTTCATGAATAGGC AACGGGTGTATTGAATATAAGTCTAGAGCTTCAAAAGATTACTACTTTGACATTACCCACAAAATTCAGTTTTTCATAAG TTTCTGTGAAATTGTATTAATTAAATCAGAGGATGATGAGACGTGAGATTTTGTTTGTTTGCTTTTGTTTTTGCTGTTTT CGTATTGTTTATGAGCTTGGTTTAATGTTGCTGTTGTGACAGTGTGATGACTGTTAATCTATGTAGTGACTTGTGGTTGT AATTGCTTACTTTATTCTTTAGGTTAGATGGAGGATTCAGAGCGAAGGAAGAAAAGGTTGAAAGAAATGCGCCAGCAAGC CGATCTAGCTGAAGTTTCTGGTGGTATCCAAGGTTCTGGGGTGCCTGGTTTTCTCTCAAATCCCCTGGTTGAAACTTCTT CAACTGTGGCATCGCAAGATAAATCACACGCTCCTCATAGATTTGACTTTTATACTGATCCAATGAGTGTATTCTCATCT GACAAAAGGAGCAATGCCAATATCCAGGCCTCACAGGGTTGTTTCCGTCCTCCAAATATTGGTGGTTCTCCTATGGCACA ATTTCCATCACCATATCCAGGTACTGCTTTCCATTACTGTTTACTTGTCACTGGTATCCTTTGATATGAGATGAATTTTA ATAACTACCTAATTATAACTGACCATTAGAGTCTTTAGATTCATATAACATCTAGTTACTGAACCTAATTTAAGCTGATT TTACTCACATACATCAATACATACTGCAATAAGGATTTCACCTGCCGTCAGTTCTGTCACTTTTTAGTAGTAACTAGTAA GTAGTATCCCTTCAATTGTTGAGTTTACATCAATTTAGTTCTCCTAGGATTATTTACATCAATAGACTACAATCTGCATT ATTTTAAAAGTTTTACCCAATCCAGAAAGAAGTTTAGTCTCTAAAAGAGGGACTTGGTTGGGTCAAGTATGAATATTAAT GTAAATAGTTTTTGGAGAATTTAATTGGTGTAATCCCAATCTTTCATGTACCAAAGATTCTTCTTGCTCTTTAATGCATG AGAAGTCTCTAGTCTATTTTTCATTAAACAATGGTTGGATCGAGACATGCATCATTGCTTTTGTAAGTTGTTTTATTGTT ATGATCTTTAATATTAACTATCTGGAATTTCTCTCATGCTCTCTTATCACCATCCAGATTTACCTTTCCTTTTTCCTCTT ACAATTGACATTCATTGATTTGAAATAACAGGATCAACAAATCCGCAGATGACCCCCTCTCCCAGTCAAGTATTTCCAGC ACCCTATAGAAACCCGGTTTGGAATGGACCTAGAGGCCCTGCTCCCTATAACTTCCCATTCCATCCATCAGGTGGTGGTA CCTATCCAAATCCTAGATTTGAACCATCAAGCAGCCCATCATATAACTACAGACCCAGCTATAGTCCGAATCCTTCTCCA GGATACACGAACACTCCAAGTCCTAGATTCGAACCATCAAGAAGCCCATCATATAACTACAGGCCCAACTATAGTCCGAA TCCTTCTCCAGGATACACGAACAATCCAAGCCCTAGTCGAGGGCGAGGTAGGGGCTCCTGGCAGAACACCAGAAGCCCTG TTTCAGGAAGGGGTGGTGGACAAGGCCGGAGTTCTCGCGGGCACTGGTCCAACGAGGACCAATCTATTGCTCCAGAACGA TATTACAAGAGGTCCATGATTGAAGATCCGTGGAAGTTTTTGCAGCCTGTAATATGGAAGGCAGTGGGTATTTCTTTTAA CACTGCACCTGCACCTGCACCTGCACCTGCATCTGCACCTGCGCCTGAGAATTCAAAATCCTGGACTTCAAAGTCGGTAA GCACAAAAAGGGATGGTTCATCTGCTGCTCCTGTCAAGTTCAGTTCGGAACCAAGCCTTGCAGAGTACTTGGCTTCTGCG CTCAATGAAGCTGCTGAAAGTGCAGAAAAAGAATGATAGCAGCTGGGAGTTCCTCCATCATGATGTTGCCTAGGGAAAGG AATGCCCAACCAATTAAGAAACTACAAGATTAAACAAGAACTCATGTCATGGATGAATGCCAGGGGCTCAGCTGTGTTGT GTTAGTGTATATATTTTATATACTAAACACCCTGACAAGCTTTTAGGAATGTATTTGGGTTACTGACATGCAACAATTAG TTGACCAATTGTATACTATATTTTCTGAATTGTACTGTAATTTTTTTTAGTACAGGTACAAGGTTCATGCTCGCTCTGGC CAGAAATTGTTAAACCGTGTAACCAAATTTTGAGTGTAATATGTTCGATTCGTGTTAAATTGTTTGGCATAACAACATAC TGAACTTGAGGATTATTGATTTAAATGGGAGACTAGGTTTTGATTAGGCCGAAAGTTGGTTTTGTATATGCATAGAACTG ATAGAAGTCTCATTTTAACTAAAGATATAGTCAAATAAGTATTTATAAAGAGAACAACCTTCACCCCTCAGTTAGATTTC AGGATAAAGTTAGGTTTAACTC
CDS sequence (LotjaGi1g1v0136600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGGATTCAGAGCGAAGGAAGAAAAGGTTGAAAGAAATGCGCCAGCAAGCCGATCTAGCTGAAGTTTCTGGTGGTAT CCAAGGTTCTGGGGTGCCTGGTTTTCTCTCAAATCCCCTGGTTGAAACTTCTTCAACTGTGGCATCGCAAGATAAATCAC ACGCTCCTCATAGATTTGACTTTTATACTGATCCAATGAGTGTATTCTCATCTGACAAAAGGAGCAATGCCAATATCCAG GCCTCACAGGGTTGTTTCCGTCCTCCAAATATTGGTGGTTCTCCTATGGCACAATTTCCATCACCATATCCAGGATCAAC AAATCCGCAGATGACCCCCTCTCCCAGTCAAGTATTTCCAGCACCCTATAGAAACCCGGTTTGGAATGGACCTAGAGGCC CTGCTCCCTATAACTTCCCATTCCATCCATCAGGTGGTGGTACCTATCCAAATCCTAGATTTGAACCATCAAGCAGCCCA TCATATAACTACAGACCCAGCTATAGTCCGAATCCTTCTCCAGGATACACGAACACTCCAAGTCCTAGATTCGAACCATC AAGAAGCCCATCATATAACTACAGGCCCAACTATAGTCCGAATCCTTCTCCAGGATACACGAACAATCCAAGCCCTAGTC GAGGGCGAGGTAGGGGCTCCTGGCAGAACACCAGAAGCCCTGTTTCAGGAAGGGGTGGTGGACAAGGCCGGAGTTCTCGC GGGCACTGGTCCAACGAGGACCAATCTATTGCTCCAGAACGATATTACAAGAGGTCCATGATTGAAGATCCGTGGAAGTT TTTGCAGCCTGTAATATGGAAGGCAGTGGGTATTTCTTTTAACACTGCACCTGCACCTGCACCTGCACCTGCATCTGCAC CTGCGCCTGAGAATTCAAAATCCTGGACTTCAAAGTCGGTAAGCACAAAAAGGGATGGTTCATCTGCTGCTCCTGTCAAG TTCAGTTCGGAACCAAGCCTTGCAGAGTACTTGGCTTCTGCGCTCAATGAAGCTGCTGAAAGTGCAGAAAAAGAATGA
Protein sequence (LotjaGi1g1v0136600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEDSERRKKRLKEMRQQADLAEVSGGIQGSGVPGFLSNPLVETSSTVASQDKSHAPHRFDFYTDPMSVFSSDKRSNANIQ ASQGCFRPPNIGGSPMAQFPSPYPGSTNPQMTPSPSQVFPAPYRNPVWNGPRGPAPYNFPFHPSGGGTYPNPRFEPSSSP SYNYRPSYSPNPSPGYTNTPSPRFEPSRSPSYNYRPNYSPNPSPGYTNNPSPSRGRGRGSWQNTRSPVSGRGGGQGRSSR GHWSNEDQSIAPERYYKRSMIEDPWKFLQPVIWKAVGISFNTAPAPAPAPASAPAPENSKSWTSKSVSTKRDGSSAAPVK FSSEPSLAEYLASALNEAAESAEKE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Coils | 1 | 21 | 21 | - | – | |
| PANTHER | 1 | 341 | 341 | 9.6E-75 | ||
| MobiDBLite | 82 | 250 | 169 | - | – | |
| MobiDBLite | 100 | 114 | 15 | - | – | |
| MobiDBLite | 151 | 172 | 22 | - | – | |
| MobiDBLite | 180 | 246 | 67 | - | – | |
| Pfam | 233 | 275 | 43 | 2.8E-8 | ||
| MobiDBLite | 282 | 321 | 40 | - | – | |
| MobiDBLite | 296 | 321 | 26 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | MRNA splicing, via spliceosome | The joining together of exons from one or more primary transcripts of messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced. | ||
| Biological process | Production of miRNAs involved in gene silencing by miRNA | Cleavage of stem-loop RNA precursors into microRNAs (miRNAs), a class of small RNAs that primarily silence genes by blocking the translation of mRNA transcripts into protein. | ||
| Biological process | Regulation of phosphatidate phosphatase activity | Any process that modulates the frequency, rate or extent of phosphatidate phosphatase activity. |
Expression pattern of LotjaGi1g1v0136600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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