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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0141600 |
| Transcript ID | LotjaGi1g1v0141600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ring finger protein, putative; TAIR: AT1G72220.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q8LFY8|ATL54_ARATH RING-H2 finger protein ATL54; TrEMBL-Plants: tr|A0A1J7GUP0|A0A1J7GUP0_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0141600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:23385380..23387423) extracted from Lotus japonicus Gifu genome v1.2.
GTTCGTAATTATTTTTGCTACCAACTTAATAGACAAAATTGCAAGATAAATGATGATGATGATGACTGAACTGCCTAAAC CTTTCCTCGGATGAAACCTGAACTACTCTTATATGTAACTTGTTTAATAAACTAACCAATTTATAAAACGAGGGAGGTAT GGAGGTTCTTTCAAAACTTAATTGTCGATCACCAAACACAACAAACACATCAAAGTCTCCTAAACCTTCGAAAGAGACAT CAAAACAAATTAAAGGAAAAACCATTCCTTCTCTTTTAATCCAAAGAAATTCCAGCTCAAGCTTCTCAGTCACAAACAAT CCCATTTTTCATTTCTTTTCTGTCCCAAATTTGCCTCTAAATTTCTCCTTAAAACACTTCCAATGTTGATGAAACACAGA AAACTCTTCCCAGATGAAACAGCCACAAACCAAACCCAAGATTGTTATGGCTTTTGTGATCCATTATGCCCTTACAACTG CTACTCAAACCAAAATTACTACTTGCCTCCACCACCGCCTTTCGGCGGCGAGAACTCAAGGCAAGAGAACCACATCCCCT CCTACTTGATCATCCTTGTTTCTTTCTTCACTGTAATTTTTGTTCTTGTTGGATTCTACGTGATCAAATTGAAATGCTAT GCTGATTGGTGTGGCCCGAGAAGAGTGAACAACTCTGTTCCCTCTCAAAACTCTGAAGAGTTTCTCAATGAGAACCAAGT TGAACACCCAGTGTGGCTAATCGCCACAATTGGGTTACAACAATCAATCATAAACTCAATCACAGTGTGCAAGTACAGAA AGGAAGAGGGTTTGATCGAAGGAACCGAGTGTTCTGTGTGTTTAAACGAGTTTCGTGAAGACGAAACCTTGAGACTCTTA CCAAAATGCAACCATGCTTTTCACATCCCCTGTATTGACACATGGTTGAGATCTCACACCAATTGTCCTCTTTGCAGAGC AGGTATTGTAACTGTAACCAACAATGTTGCTCATGAATCAGCCATGTCAAATTCCGAATCCTTGGAGCAGGAAAATGCAA GCTTAGGAAGAAATCAAGAGACCCAGATGGAGAATTCACAGAATGATGGTGGGTTAAGCAACAATATTGTTAGCACTGTT GTTTCAGAAAACAGGGGTGGAACAGGGGAATCAAGTGAAGCACTAGATGAATCGAATTCCAAGGTTCCTGATCCACCTCA GAATCAAACGGTTGTTACTAATCCAATTGAGGTGAATTCTGTTTCCACTGAACATGAAAGGCATCACAATATTGATCATA CACAGGATGAAACAGAATTGAACAGAGTTAATCTTCTCTTGAAGCAAGATGGTGATCACTCAAAAACATGTAGAACAGGA GCAGGAGCAATGCGTCGTTCTTCAATTGAAGAGTGTTTGCACATAAGTCCGGTATCAATGAAAAGATCATTTTCATGGAA CGGGAGGATTCTATCTAGGAGAGGTTACATGAGTCTAAACTCAACTCTTCCTTATTAGAAAGAAATCAAATTGAATGAGG TTTTGATTCTGAAGAATAAAAGGTAACTGTAGTTGAAGTTTAATCTACCATATATGGAGGCATGTGAAAATAACTCTGCT TTGTGTGTATATATCATAAGTCACAATGTCCAAGTACCACTGAAGAAAGGGCTAGATCCCACTATAGGACAAGAGGTACG TTTGAAAGAGTTTAGTTTAGTGCCCTATCCTTTGCTTCAGGACTGTGTTTCTAGATGCTTGATTTTGTATTTAATGGGGT CATTGTGCTTACGCCTGAAATAAAAAAATGTATCTAAAGAGCAATTTAGGGACTTAGATAAGGTCTCATTTGGGCTCTAC TTCCTGGTTTACAAGCTCTAGGGCAATGCGACTTTAGGCTCGAAAATTACATAACTTTTGTCTTCTCCCATTTGCACTTC AGAAAGTCTTTTTATCTTATAGTGTTTTAAGTTAAAAATAACTCAAGCTATCCGGTAATAACCAGGTGAGGAAATAGAAA TTCATTCACGTATATTTTTGCAATTTAAGCATTGTACTTCTACG
CDS sequence (LotjaGi1g1v0141600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTGATGAAACACAGAAAACTCTTCCCAGATGAAACAGCCACAAACCAAACCCAAGATTGTTATGGCTTTTGTGATCC ATTATGCCCTTACAACTGCTACTCAAACCAAAATTACTACTTGCCTCCACCACCGCCTTTCGGCGGCGAGAACTCAAGGC AAGAGAACCACATCCCCTCCTACTTGATCATCCTTGTTTCTTTCTTCACTGTAATTTTTGTTCTTGTTGGATTCTACGTG ATCAAATTGAAATGCTATGCTGATTGGTGTGGCCCGAGAAGAGTGAACAACTCTGTTCCCTCTCAAAACTCTGAAGAGTT TCTCAATGAGAACCAAGTTGAACACCCAGTGTGGCTAATCGCCACAATTGGGTTACAACAATCAATCATAAACTCAATCA CAGTGTGCAAGTACAGAAAGGAAGAGGGTTTGATCGAAGGAACCGAGTGTTCTGTGTGTTTAAACGAGTTTCGTGAAGAC GAAACCTTGAGACTCTTACCAAAATGCAACCATGCTTTTCACATCCCCTGTATTGACACATGGTTGAGATCTCACACCAA TTGTCCTCTTTGCAGAGCAGGTATTGTAACTGTAACCAACAATGTTGCTCATGAATCAGCCATGTCAAATTCCGAATCCT TGGAGCAGGAAAATGCAAGCTTAGGAAGAAATCAAGAGACCCAGATGGAGAATTCACAGAATGATGGTGGGTTAAGCAAC AATATTGTTAGCACTGTTGTTTCAGAAAACAGGGGTGGAACAGGGGAATCAAGTGAAGCACTAGATGAATCGAATTCCAA GGTTCCTGATCCACCTCAGAATCAAACGGTTGTTACTAATCCAATTGAGGTGAATTCTGTTTCCACTGAACATGAAAGGC ATCACAATATTGATCATACACAGGATGAAACAGAATTGAACAGAGTTAATCTTCTCTTGAAGCAAGATGGTGATCACTCA AAAACATGTAGAACAGGAGCAGGAGCAATGCGTCGTTCTTCAATTGAAGAGTGTTTGCACATAAGTCCGGTATCAATGAA AAGATCATTTTCATGGAACGGGAGGATTCTATCTAGGAGAGGTTACATGAGTCTAAACTCAACTCTTCCTTATTAG
Protein sequence (LotjaGi1g1v0141600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLMKHRKLFPDETATNQTQDCYGFCDPLCPYNCYSNQNYYLPPPPPFGGENSRQENHIPSYLIILVSFFTVIFVLVGFYV IKLKCYADWCGPRRVNNSVPSQNSEEFLNENQVEHPVWLIATIGLQQSIINSITVCKYRKEEGLIEGTECSVCLNEFRED ETLRLLPKCNHAFHIPCIDTWLRSHTNCPLCRAGIVTVTNNVAHESAMSNSESLEQENASLGRNQETQMENSQNDGGLSN NIVSTVVSENRGGTGESSEALDESNSKVPDPPQNQTVVTNPIEVNSVSTEHERHHNIDHTQDETELNRVNLLLKQDGDHS KTCRTGAGAMRRSSIEECLHISPVSMKRSFSWNGRILSRRGYMSLNSTLPY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 60 | 60 | - | – | |
| PANTHER | 3 | 273 | 271 | 1.3E-75 | – | |
| PANTHER | 3 | 273 | 271 | 1.3E-75 | – | |
| TMHMM | 59 | 81 | 23 | - | – | |
| Phobius | 61 | 81 | 21 | - | – | |
| Phobius | 82 | 371 | 290 | - | – | |
| Gene3D | 124 | 201 | 78 | 5.2E-21 | ||
| SUPERFAMILY | 139 | 202 | 64 | 6.13E-22 | – | |
| SMART | 146 | 200 | 55 | 0.0086 | – | |
| Pfam | 149 | 192 | 44 | 4.5E-13 | ||
| CDD | 149 | 192 | 44 | 8.63493E-17 | – | |
| SMART | 150 | 191 | 42 | 8.6E-8 | ||
| ProSiteProfiles | 150 | 192 | 43 | 12.917 | ||
| MobiDBLite | 206 | 278 | 73 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0141600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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