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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0146700 |
| Transcript ID | LotjaGi1g1v0146700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pumilio; TAIR: AT1G22240.1 pumilio 8; Swiss-Prot: sp|Q9C9R6|PUM7_ARATH Putative pumilio homolog 7, chloroplastic; TrEMBL-Plants: tr|G7KAF0|G7KAF0_MEDTR Pumilio-family RNA-binding repeatprotein; Found in the gene: LotjaGi1g1v0146700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:24946372..24952330) extracted from Lotus japonicus Gifu genome v1.2.
CGACCGATCCTTTATTCACACTTTTACACCTCACACTTTTAGATATCGACCGATCGAAAGAGACGAAAGTAATACAATAT GCGATGTGATAGACCTAAAGTATTGATAACGAGTGAAAATGAGATGAAAGAGAAAGTGACGCCGATACAAGTACACTACC AACAAAATCAAAAACCTCACTCACTCTCTCTCTCACACACACACACACTCTCTCTCTCCGTGCAACAACCCTGATATTGT TATTATTCCTTTTCCGTTGCTTGTTGGTTCCTCCCTCAAAAGCTGCTCTGCAGATTCAACAATGCTTCGCTCACACTGTG CTGGTGCTGCCACCACTCCCAACTAACCGACCACTCCGCACACATTTGCAGACTTGTTTTTTGTTTTTTCCAATCGTAAT CCTCTGTCTCTGTCTCTCTCTCTGTTTGTTTTCATCATCTCAAATTTCAATCGTCTCGTTTCGTTTCGTTTCAATCCACC GTCGTTTTGGAGATCATGTTCAACGACAACGCCATGAGAAGGAAGCAACAAGAGCTCGAGCTAGCTTGGCTCAACGCCGC CGCGGCATCTAACGAACCACCACCGCCGCCTCCGCCGTCGTTTTACGACCTCTACCCCAGCCACCACCACCACCACCACA TGGTGTCACTCGCGCCGTCGAAATCTTCAACACCGTCGAATCAGTTCGATTTCTACGGCGATGGGGTGTTGTTCGGAGAT GACAAGTGGGTGAGTGATGATGACAACAACAACGATGTTGGATTTGGAAGCGTTCACTTGTTGTCTAAGGATTTTTCTGG AATGAGTATCGTGGAGGAGCAAGTGATGATGAACAATCATCACGGTGCCAAAACCACCACCAGAGGGGTGGTGCCAATGG CAATGCCGTCGTCGTTCACGCCGTATGGTTTGGAAGAAGAACTACCGCATCCTCTGTTTCATCAGCGAAACGTGGCGGCC ACGAAATCCTCCGCCACTTGGGGTGGTGGTGGTTCTGTTTCTCAGGGTTTAGTCTCTGATGTGAATTGGTCTTTGCCTTC TTCTTCCAAAGGAAGCGCGTTTGATTCTCTCTGCTACGGGAACAGTGAGTGCTGTGGTGGTGATTGTTATGGCGGCGGCG GTGGTGGTTATGCGCGTGTAACTCAGTTTCAGAAGCCATCTTTTGCTGCTTCACCTTCACCTTCACTTTCACCTTCACCC CACTACCCTTATGACCATTTTCTCTTGTCACCGAGAAGATCATCGTTTGAATCGCAACAACCCAAGATTGGTTTGAATCT AAACAATGCTAGACCCTCCTCACGTTGTTTCCCTGCAACGAGAGAATCACCCAACTGGGAACAACAACAACAATGTCAGC AATCTCTGTCTCCAGGAAGAACAGGATTTGACCCTGTAGCGTTTCGGTGTGATAACAGCTTCATCATACAAGGGAAAGAC ATGAGATCACGCTGTGAAAATGGGTGTAATGGCAATGGCAATCCTGTATGTGGTAGTGGAAGAAAGCATACATATTCCCA TTCTCATTCACACCGTGTTGTTGGAGAGGAAGTTCCTCTTCCTCTTCCTCAGGTGGTTGTTTCTCCTCGTGTTCCTGTTT GTAACCATGGAAATAGTAGCAGTGTTGCTGCAGGTGATGTCATGCAGCCATTGCTGCTGAATTTTGGGTCTGTGGCTGAG CTACAAGCTTACATGTACCACATGGCGAAGGATCAGAATGGTTGTCGCTTCTTGCAGACCATGGTTGAAGATGGGACCCC TGAAGATGTTCAGATAGTGTTTGAGGGGGTGAGAGATGTTGTTGTTGAACTCATGATGGACCCTTTTGGAAATTACCTTG TGCAGAAGTTGGTGGAGTTTTGCAGAGATGATCAGAGGTTGCAGATTGTGCTAATGTTGACTAAGGAACCAGGGCAATTG GTCAGAACCTCTTTGAACACACATGGGTATGTAATTATGATTATAAATCCTTCTCCATTTCAACTAAGAAACTGTCAATT CCTTAATTTGGTTGTTTTGATACACTGAACTGATTATGGTAATTACTGTTTCAGCACTCGGGTGGTTCAGAAGTTGATTG GGAGCCTCAGGTCAAGGCAACAAATTTCATTGGTGAGGTCTGCTATTCAACCTTGTTTTCTTGATCTTGTCAAGGATCTG AATGGAAACCATGTTGTCCAACGTTGCTTGCAGTGCCTTAACAACCAAGAAAACGAGGTATATATAGCACTTCTCTCTTT TCCTTTTTATTATGTTTTTTATTCTATTTTTGGCCTTTGTTACTTTTGAAGTGGACATCACTTGGTTGCATTGTATGATT GCATAGTAAGGCAATTTTATTTAGCACTGATGTGATCAATAAAGGGAAGATAAATTATTGCTTGTTACACATTTCCTAGA TATGTTTTGCTTAAAATTTGTAAGGCCTTGTCATATCGTCATGACATATCGTCATGACGTGCACCTTAGAGTATTTAATT GCGATTGCGTTACGGAATTGTTGACCAATGCACAATTTATGTTGCTATGCCGTGTGAGGACTCCAAAATCTTTTACATTG CGGCCGCAATTGCAATCACGGATTGCAATTTAAAACTCTTACACATCACCCTTCCTGCTTGCTTTCAGTAACTTGGACAC CACAAAGGTATAAGAAAATTAGATTGTAACCGTTTCTCATTATTAATGAAGCAAACCAACAATAAGTCATGAGAAGTGTC TTCATTGTTTCATTTTGTTTGACCTTTTTATTACAAGTATGATAGTCTCTTAATCCAAGTTTTACATTCCATTTCAAAAT GTCATGAGTAGAGTTTAGGAATGTAGTGTAGTACATACCACTTGAAATCATAGTTCTGTCAATTTTAAACCTGAATTTTG TTACTCTGTTCTTTCCAGTCTGATCATGTTTCGTTTCTGTGTTTTGCTAATTTATAAGCCTATGTCTTCCTCTGGTCACT TTTGAAAAAAAAAATTAAAAGGTAAATTAGCTGTGGAACAATATTCACCATGGTGTTTTCTTGGAAGACCATACTGGTGA AGCCATTCTCTACTTGGCCTGAATATTTTTTTCATTTCCTTAAAAGGACAATTTCTCTGCCTATAAGAAATTAAGAACAA TGTTGTGGTTGAGAAAGTACTGATTACTGACAATTGGCATAGAACTGAAAATTTAAGTTAAATATAATCCTTTAAATTTC ATCATACAAATTTCTTTTTGTGCTAGTCAGTAATTTTTAAAGTGTTTGAGTTATTGGCACTGTGATTGCTCTGTCTTATG AATTAGTTAATGAGTAGATATAACTTACATGCTGAAAAGTTATAAGCCTTTTTGGATTTTAGGTAAGGATAGTGAACAAA TCTTAATGCACTAGGACATCCTCAAAGATAAATATTGTGTGAAGATAGGCTAAATTCTTAATCAAGTTTGAAATGGATTT GATTCAAATCTTTTGCATAATGATTTTGATGGAGTTGTGTACTCAGTCTGGGTAAGAATCATGTTAGAAGCATCATTTGA AAGAAATTATGACATTTGAGGTAGCTAGTAGGGTAAAAGAGACATTATTCAACTTATACTAGTGGTGAGTTTCATGTAGA GAAAAATAGAGAACCTGAATGAAATGTGTAATTGATAACTCTATTATCCAAGGAAACATTTGTAAATAATAATGGTTATG GTTATCAGTTCTATAATAATTTTCAATACTGATAGTTTGTTCTTGAAGTTAAAAAACAGAAGTGTGAAGGACTTGCCTTA ACGATTGCTGATTTTCTCCCTTATCTTCTTTATATTGAATATGGTATTTTAGTGTATACTTATGGTGAAATTTCAATTTA TCAATCATGTGTTCTTTAACATCTGATTCATCATCTATTTTATTTTATCTTGGACCTGCAGATTGTGATTGAAACTAATT GAAGTGTTTCTTTGTTCTTGTTTCCCTCTATTTGTGACAGTTTATTTTTGATGCTGCTGTGAAGTTTTGTGTTGATATGG CTACTCATCAACACGGGTGCTGTGTACTGCAACGTTGCATTGATACTTCCACGGGAAAATGTCATGATAAGATAGTCAAA GAAATATGCAAACATGCGCTTCTCCTGGCTCAAGATCCATATGGGTAATCTTCCTTTGTTTTATAATTTTGTGAAATAAC AAAAATTATAAAAAGTCATGTAATTACTAAGTAATGACTATAAAGTATTGTATGTAATGACTATACTAAGTGAAATTAGG CAACTAACAGCATATGACCTGTCCCAATTAAACTTTGCTATAATTAGAAACCAAAATTAGAAATAGTTTCACTCCAATGT GATAACTCCTGATTAAGCAATTACAGAAGAAAATGAACTGATTTGAAGGAACTAGATTGGGTTTCTTCTTTGAAACTTAA AACGTTTAAATTAATTTGTTGGGCTTTATCTGTTTTATAAATGATGTGCAAAATTAAAAATTCTTCCTGCTGCTGGTATT CCTGCTTGATTTGCTTTTCTCTTGTATTCATTTCTGACCCTTCATCTAACCACCACAGTAACCATAAAAATAAAATATAA GAGGTTATTGAAACATGATTAGTAAAAGTTGAAACACTGTGCAATTGGTTATTTACATCTTGGGTTTATTGTTTATTTAT AACTCTAAATTTGTAAGGTAGGAGGGCATCAAATTAAAGTAACACTTTCAATTTGTTATTTCCCAGAAATTATGTTGTTC AGTATATCATAGACCTGGAGAACCCAAGTATCACAGCCAAACTGATTTCTATGTTCAAAGGGAACTACATAAACCTCGCC ACACAAAAGTTTAGCAGCCACGTGGTTGAAAAATGCCTCAACGAAGTTCCAGAGACCAGATCCAGGATAGTCCAAGAATT GCTGTCTGTTACTCACTTTGAGCAGTTGCTGCAAGACCCATATGCTAACTATGTGATTCAATGTGCTCTCTCAGTGACCA AGGTATTAAATTCTATATTTTGTGTATCTGTGTATTATCTAGGGGTGCCAACTTGGGTTTGATCCGTGAGTCAACCGATT TAACCGGTCAAGGGGTGGGGCTGGTTAGACAATCGAGTTAGCCAACTCACATAAGCCGTCAACCCGCGAAACAACATATA AAAAAAACTGTAATTTTTAGCGCTTTGGGGAATTTTGGTGTGCCAACCCGTTTTTTAACATTTATATGTCATAATTATAT TTGAAATAGTTTTCTTTACCGAAGAGTTAACTGCCAACCCGCCACTAAGCGGCATGAATTAGCTTTTTCCAACTCATTCT CTAGCGGGGACCTACTTTAGGCGGGTTGAAAGAGAGGCGGGGCGAGTTGACCCATATTGTCACCCCTAATTAAATGTGTC AACTTGCTATTCTTTGCCTTCTCAACTCAGGATGTTGATGCTTCCTTTCTTGTTTGTTTCCTTTTCATACAGGGACCTCT GCATGCATCTTTGGTTGAAGCAGTTCGCCCCCACAAAATCTTGCGAACCAGCCCATATTGCAAGAGGATTTTTTCAAGAA ACCTGCTTAAGAAGTGATTGTACAAGATATGTTGTTGTTCCCACTTAAGATCACTACTATTCTCCTAATCAAGTCCTTTT TGTTTAATTTGTACGTCTAAGTTCTAACTTAGCTACTAGTATATGTTGTATCTTTGTCTGTGTGTACCAGAATCTGAGCC TAAACTGCAGAAACAAGTTTGCTACTAGCCTCTCATAAGGAACTTCCACAGGCTAGGCTTGTTTTGCAGGTGCTTTTTGG TGCAGGTGCATGTTGTATTTTTCTGTTGTCTACTGTTGTCCTATGTGATGTATGGGTACCTTATATATGGTATTTTGCAA GTTTCTAGGTCATGAACACTTTCCTGCGTGTTTTGTTTTGGAACTTTTTGTCTCAAGACTCTAGTGTGGGTGTACTACTG CCTTTTGAAATCCTAGATATTAATAAAATAAGATTTTAT
CDS sequence (LotjaGi1g1v0146700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTCAACGACAACGCCATGAGAAGGAAGCAACAAGAGCTCGAGCTAGCTTGGCTCAACGCCGCCGCGGCATCTAACGA ACCACCACCGCCGCCTCCGCCGTCGTTTTACGACCTCTACCCCAGCCACCACCACCACCACCACATGGTGTCACTCGCGC CGTCGAAATCTTCAACACCGTCGAATCAGTTCGATTTCTACGGCGATGGGGTGTTGTTCGGAGATGACAAGTGGGTGAGT GATGATGACAACAACAACGATGTTGGATTTGGAAGCGTTCACTTGTTGTCTAAGGATTTTTCTGGAATGAGTATCGTGGA GGAGCAAGTGATGATGAACAATCATCACGGTGCCAAAACCACCACCAGAGGGGTGGTGCCAATGGCAATGCCGTCGTCGT TCACGCCGTATGGTTTGGAAGAAGAACTACCGCATCCTCTGTTTCATCAGCGAAACGTGGCGGCCACGAAATCCTCCGCC ACTTGGGGTGGTGGTGGTTCTGTTTCTCAGGGTTTAGTCTCTGATGTGAATTGGTCTTTGCCTTCTTCTTCCAAAGGAAG CGCGTTTGATTCTCTCTGCTACGGGAACAGTGAGTGCTGTGGTGGTGATTGTTATGGCGGCGGCGGTGGTGGTTATGCGC GTGTAACTCAGTTTCAGAAGCCATCTTTTGCTGCTTCACCTTCACCTTCACTTTCACCTTCACCCCACTACCCTTATGAC CATTTTCTCTTGTCACCGAGAAGATCATCGTTTGAATCGCAACAACCCAAGATTGGTTTGAATCTAAACAATGCTAGACC CTCCTCACGTTGTTTCCCTGCAACGAGAGAATCACCCAACTGGGAACAACAACAACAATGTCAGCAATCTCTGTCTCCAG GAAGAACAGGATTTGACCCTGTAGCGTTTCGGTGTGATAACAGCTTCATCATACAAGGGAAAGACATGAGATCACGCTGT GAAAATGGGTGTAATGGCAATGGCAATCCTGTATGTGGTAGTGGAAGAAAGCATACATATTCCCATTCTCATTCACACCG TGTTGTTGGAGAGGAAGTTCCTCTTCCTCTTCCTCAGGTGGTTGTTTCTCCTCGTGTTCCTGTTTGTAACCATGGAAATA GTAGCAGTGTTGCTGCAGGTGATGTCATGCAGCCATTGCTGCTGAATTTTGGGTCTGTGGCTGAGCTACAAGCTTACATG TACCACATGGCGAAGGATCAGAATGGTTGTCGCTTCTTGCAGACCATGGTTGAAGATGGGACCCCTGAAGATGTTCAGAT AGTGTTTGAGGGGGTGAGAGATGTTGTTGTTGAACTCATGATGGACCCTTTTGGAAATTACCTTGTGCAGAAGTTGGTGG AGTTTTGCAGAGATGATCAGAGGTTGCAGATTGTGCTAATGTTGACTAAGGAACCAGGGCAATTGGTCAGAACCTCTTTG AACACACATGGCACTCGGGTGGTTCAGAAGTTGATTGGGAGCCTCAGGTCAAGGCAACAAATTTCATTGGTGAGGTCTGC TATTCAACCTTGTTTTCTTGATCTTGTCAAGGATCTGAATGGAAACCATGTTGTCCAACGTTGCTTGCAGTGCCTTAACA ACCAAGAAAACGAGTTTATTTTTGATGCTGCTGTGAAGTTTTGTGTTGATATGGCTACTCATCAACACGGGTGCTGTGTA CTGCAACGTTGCATTGATACTTCCACGGGAAAATGTCATGATAAGATAGTCAAAGAAATATGCAAACATGCGCTTCTCCT GGCTCAAGATCCATATGGAAATTATGTTGTTCAGTATATCATAGACCTGGAGAACCCAAGTATCACAGCCAAACTGATTT CTATGTTCAAAGGGAACTACATAAACCTCGCCACACAAAAGTTTAGCAGCCACGTGGTTGAAAAATGCCTCAACGAAGTT CCAGAGACCAGATCCAGGATAGTCCAAGAATTGCTGTCTGTTACTCACTTTGAGCAGTTGCTGCAAGACCCATATGCTAA CTATGTGATTCAATGTGCTCTCTCAGTGACCAAGGGACCTCTGCATGCATCTTTGGTTGAAGCAGTTCGCCCCCACAAAA TCTTGCGAACCAGCCCATATTGCAAGAGGATTTTTTCAAGAAACCTGCTTAAGAAGTGA
Protein sequence (LotjaGi1g1v0146700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MFNDNAMRRKQQELELAWLNAAAASNEPPPPPPPSFYDLYPSHHHHHHMVSLAPSKSSTPSNQFDFYGDGVLFGDDKWVS DDDNNNDVGFGSVHLLSKDFSGMSIVEEQVMMNNHHGAKTTTRGVVPMAMPSSFTPYGLEEELPHPLFHQRNVAATKSSA TWGGGGSVSQGLVSDVNWSLPSSSKGSAFDSLCYGNSECCGGDCYGGGGGGYARVTQFQKPSFAASPSPSLSPSPHYPYD HFLLSPRRSSFESQQPKIGLNLNNARPSSRCFPATRESPNWEQQQQCQQSLSPGRTGFDPVAFRCDNSFIIQGKDMRSRC ENGCNGNGNPVCGSGRKHTYSHSHSHRVVGEEVPLPLPQVVVSPRVPVCNHGNSSSVAAGDVMQPLLLNFGSVAELQAYM YHMAKDQNGCRFLQTMVEDGTPEDVQIVFEGVRDVVVELMMDPFGNYLVQKLVEFCRDDQRLQIVLMLTKEPGQLVRTSL NTHGTRVVQKLIGSLRSRQQISLVRSAIQPCFLDLVKDLNGNHVVQRCLQCLNNQENEFIFDAAVKFCVDMATHQHGCCV LQRCIDTSTGKCHDKIVKEICKHALLLAQDPYGNYVVQYIIDLENPSITAKLISMFKGNYINLATQKFSSHVVEKCLNEV PETRSRIVQELLSVTHFEQLLQDPYANYVIQCALSVTKGPLHASLVEAVRPHKILRTSPYCKRIFSRNLLKK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 282 | 712 | 431 | 2.8E-213 | – | |
| PANTHER | 282 | 712 | 431 | 2.8E-213 | – | |
| ProSiteProfiles | 371 | 712 | 342 | 77.981 | ||
| Gene3D | 391 | 708 | 318 | 1.6E-113 | ||
| SUPERFAMILY | 395 | 706 | 312 | 7.49E-93 | ||
| SMART | 395 | 430 | 36 | 9.9E-5 | ||
| ProSiteProfiles | 395 | 430 | 36 | 9.061 | ||
| CDD | 403 | 707 | 305 | 1.84577E-130 | ||
| ProSiteProfiles | 431 | 467 | 37 | 10.204 | ||
| SMART | 431 | 466 | 36 | 1.2E-6 | ||
| Pfam | 434 | 464 | 31 | 6.4E-5 | ||
| SMART | 470 | 505 | 36 | 1.2 | ||
| ProSiteProfiles | 470 | 505 | 36 | 7.637 | ||
| ProSiteProfiles | 507 | 542 | 36 | 9.201 | ||
| SMART | 507 | 542 | 36 | 7.3E-6 | ||
| Pfam | 512 | 541 | 30 | 1.8E-5 | ||
| ProSiteProfiles | 543 | 578 | 36 | 7.824 | ||
| SMART | 543 | 578 | 36 | 0.0072 | ||
| Pfam | 546 | 569 | 24 | 7.6E-7 | ||
| SMART | 579 | 614 | 36 | 1.5E-5 | ||
| ProSiteProfiles | 579 | 614 | 36 | 10.157 | ||
| Pfam | 582 | 605 | 24 | 3.2E-5 | ||
| SMART | 615 | 649 | 35 | 0.0028 | ||
| ProSiteProfiles | 615 | 638 | 24 | 6.004 | ||
| Pfam | 616 | 647 | 32 | 1.7E-4 | ||
| ProSiteProfiles | 650 | 687 | 38 | 8.337 | ||
| SMART | 652 | 687 | 36 | 0.079 | ||
| Pfam | 655 | 677 | 23 | 2.1E-4 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | RNA binding | Interacting selectively and non-covalently with an RNA molecule or a portion thereof. |
Expression pattern of LotjaGi1g1v0146700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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