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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0157600 |
| Transcript ID | LotjaGi1g1v0157600.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Proteasome subunit beta type; TAIR: AT1G21720.1 proteasome beta subunit C1; Swiss-Prot: sp|Q9LST7|PSB3_ORYSJ Proteasome subunit beta type-3; TrEMBL-Plants: tr|I3S150|I3S150_LOTJA Proteasome subunit beta type; Found in the gene: LotjaGi1g1v0157600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:29282548..29286252) extracted from Lotus japonicus Gifu genome v1.2.
ATGTCAATCTTCGAGTACAATGGAAGTGCCATAGTCGCCATGGTTGGCAAGAACTGCTTCGCCATTGCCAGTGATCGCAG ACTCGGCGTTCAGCTCCAAACCGTAGCCACCGATTTCCAAAGGATCTTCAAAGTTCACGACAAGCTCTTCATCGCTCTCT CTGGTCTCGCCACCGATGCTCAGACACTGTAGTATACCCTTCTCTCAATTTTCACCCCCTTTCATGATTTTCTTCACTTT ATTGTTCTTTCCCTAATTTTTGTTTGTTTTCTGATTCAAGGTACCAGCGTCTCGTTTTCCGACACAAGCTTTATCAGCTT CGTGAAGAGAGGGATATGAAACCAGAGACCTTTGCAAGCTTGGTCTCTGCTCTTCTTTACGAGAAAAGGTAACACCCTTT GGATCCCAGATTCTTATGCAGAGAAACATTGTGGGATGTTTGGTTTTTCATTTTAATTTACTGCAAAAACATGATTTTTA TTTATTTACTATTATCACTTTTTTTTAACAGGAATTGGTGGAAATAAATTAAAAAAAAATAAATAAATAAATACAATGGA GCATGTTTGCTATTAGAACTTAATCCAGTTGATGAAAGAAAGGCAAGTTACTAACTAGGGTTAATTGATTCATTTGGGGT TTGCTTGTTTTAATTGAATTTGAGTATAGGTTACTCCTTGTAGTAGTGAGTTCTGAAAGTATTGATTGAAACCCTTTTGT GGAAGGAAATCTTTGCTGGCCTAAAGAGTGATAAAATGTGTAGTTTCATTTGAATATGCTACTTACTTGTATTTGACTGC TAGTTAGAAGTTATAATTCTTTTATGCTGTGGATTTAGACACTGAGTTTGCTTGACTTTGACTGAAAAGATTAACAATCT ATGGTAAGAAAAGAAAGTGAAGAGATTTGTTAGTTATTGGTAAAGTGCTGTTTTAACTTTAATAGAGGAGTTTGTATGGA AGTGAATGGACTGTGTGCTTGGCCTTGCAGTCTCACTTAACTTGCTTTTGTTTCCCCATGGGGTTTGGAAGCTTTTTCCA GAATTGGCAATGCAGAGCCACTGAGCCAGTGAACATTGAACGCCCAGTTTTCAAATTTTGAGCTAAGTCAGATTATTTCA TAACAGTTTTGGCCAACTGATGGTAAAGATATGAAAAGCAGAAGTTCATTTTCTGAACTAGATTAAATGCTTTGTTATTA TTCCACTAGAAGAGGGGAAGGTGGGTTTGGTAATTATAAATATTTTAGATGAGCCGTGTTGAATTCCAATTTGTGGGAAT GGTGGAGTTTTAGCCTTTTGAGCTAAGCCAAACATGTGATTCAACCCCCAATGAGCTTGATGTGACTCCGCAAGCGTTTT TCTTCGACACCTAGTGGAAGTTGAGGGATTGAGTCATTAGTTAGGTCGTAGAATGATCTAAGTCTCAGTAACAGTGCGGG CTTAGGAATGTACGAGGATTGGGGTTTAAGCATTGAGCATCTACTTCTTGTAATCTTTATTGAACATGCTTGAATTTTTC TCTCTTTCTTGCTGATTGGCGTAGACCTACAGCTTGTTGCAAGTTGAATTGAACCATGTTAAATTCTATATCTATTATTT TTTTCTTCCTTTCGGTTGTTTGTGTTACAACAAATCACAATTAATTATAATATTTTAGATTCTCTTGTTATGTAGTTTAT CTTAATAAACTCAATATGTTAAAACTTTGAACACAAAGTATGCATTCTTTTGCCTTTCAGGTTTGGTCCATACTTTTGCC AGCCTGTAATTGCCGGATTAGGGGATGAAGACAAACCATTCATTTGCACAATGGATTGCATTGGAGCAAAGTAAGTTCAT TTGTTCTACAGTCCATATTTTCTTGTTGAGAGAGATTAATGAGTTAAAACTTGTAAATAGATGAAATTAGAGGATTTCGT ATTTAAGGTGAAAAATAATACAAAGAATAAAATTGTATTATATATAGGGTGTGATCTTACAAAAGACATAGCACTTACCC TTTATCTGTTGTAATGATAGGCTCCTTATTCTAGTTGAAAAACAAATCAATATAAATAAGGAAATAAGGAGACCGATCCT AAAGAATAATCCAAGTTACCATAAATTACTATACAACAATACAGAAACAAAAGTTTTATCCCACTAAGTGAGGTCGGCTA TATGAATCTCATGATGCATTGCGCTCGATCAAAAACCAAATGACCTTAAGATATGAGTATCCTTTTATATTATAAAATAA ATGTTGAAACCATTTTCAATTGGGCTACTTCAATGCCCGAACAGTTCTTGGATGTAGGAGAAAAACAACCCTAATATTTT CTTATGTGGAAGAAAATGAAGTGGTATGATTGTCATAGGCTAATGTTAGTTTCTACCACTGAATATGATTTTGGTTTATT TATCCCCCCACCCCAGAAAAGCATTTCCTGGAGAATTGGTGTTTGCGATTTATGGTGAACTCCTGCAAGGGGGTTGCTAA ATAAATCAAGGTTTATGCATCATTGTTCACTACTTTTGACAACTAAGCTAGAGATACGTTATGATTGAATCTGCCCTTTG ACTTCTTTGTCCTCTAATATGACAATATATTGCATGTTAATTTGAAGGTGCCTTTTATGCAAGTTTATTCTTCCCTTTCA TCATTAGAGTAATCTGAGGCTTTATATAATTTCATATGAGATGTTATGCATCTGATACTAACACTAATATCGTTCTAATT TCTTGTATGCAGGGAGCTTGCAAAAGATTTTGTTGTTGCTGGCAGTGCATCTGAGTCTCTATACGGTGCTTGTGAGGCAA TGTTTAAGCCTGACATGGTTTGTGACGTAGCTACATGTTTTGTCTTTTATTCAACTCGCTTGTGTGATCTTGCGAATTGA TGCAGTCATGTTTATGGACATCTCTAAATTGACATATGCACAAACTAGCGTACTTTCACCTGGGTAGAATCTTGCCATAG ATCCAAACCAGAACGTCATCCATGTATTGTAGACATCATATTGCTGCATGGTTGTAGAGTAAGCTTCACTGTCGAAGTGT AGATGAAAAAATAAGTCATCTTAGGTTTTAAACCTCAATTCGCTTGACTAGTAAGTTGATGGATCGAACCTGTACCAGAA TTTTTTTTTCTATAAGGTTATGTTTGAAAAATTATTGTAGAACTGAATCTTCTGCTCAGGGTAGGAGCAAATTCCCATCA GAATCTTTAAAATGTTGTGACATGAACATTTTGGCATAGTTCTACGATGAACAAGTTAATTCACAATGATATTTTCTTGG AGAAGGGGTGAAGTCTGCATAAATGAATTTTAAAATGCTATTACATGTGCAGACATATATGAGGTAAAGTAGTTAGCAAG TTACAAACCTGCAACAATAGCTGTGCAATTTCTATGGGAACGGAGTTGCTGAATGGAAATATGATGTTTTCATGGTGTGT CGGAGGAGTTTGTGGTTCAAATAGAAAAGAACATTAGTAGTGTCTAAAATTTGCATCTTGTCTCACCATCAAAGTTTTGC ACATTATCATAACTTATGATTTTGCTTAAAAGATATTTTTAATTTAGTTTCTTTATGTTCAATATTGGTTTCTTATCCTG ACACAGGAACCAGAGGAATTGTTTGAGACCATCTCCCAAGCACTGCTATCATCAGTAGATCGTGACTGTTTAAGTGGCTG GGGCGGGCATGTCTATGTCGTGTAA
CDS sequence (LotjaGi1g1v0157600.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCAATCTTCGAGTACAATGGAAGTGCCATAGTCGCCATGGTTGGCAAGAACTGCTTCGCCATTGCCAGTGATCGCAG ACTCGGCGTTCAGCTCCAAACCGTAGCCACCGATTTCCAAAGGATCTTCAAAGTTCACGACAAGCTCTTCATCGCTCTCT CTGGTCTCGCCACCGATGCTCAGACACTGTACCAGCGTCTCGTTTTCCGACACAAGCTTTATCAGCTTCGTGAAGAGAGG GATATGAAACCAGAGACCTTTGCAAGCTTGGTCTCTGCTCTTCTTTACGAGAAAAGGTTTGGTCCATACTTTTGCCAGCC TGTAATTGCCGGATTAGGGGATGAAGACAAACCATTCATTTGCACAATGGATTGCATTGGAGCAAAGGAGCTTGCAAAAG ATTTTGTTGTTGCTGGCAGTGCATCTGAGTCTCTATACGGTGCTTGTGAGGCAATGTTTAAGCCTGACATGGGTAGGAGC AAATTCCCATCAGAATCTTTAAAATGA
Protein sequence (LotjaGi1g1v0157600.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSIFEYNGSAIVAMVGKNCFAIASDRRLGVQLQTVATDFQRIFKVHDKLFIALSGLATDAQTLYQRLVFRHKLYQLREER DMKPETFASLVSALLYEKRFGPYFCQPVIAGLGDEDKPFICTMDCIGAKELAKDFVVAGSASESLYGACEAMFKPDMGRS KFPSESLK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 163 | 163 | 6.8E-46 | ||
| PANTHER | 2 | 160 | 159 | 7.2E-102 | – | |
| PANTHER | 2 | 160 | 159 | 7.2E-102 | – | |
| SUPERFAMILY | 4 | 159 | 156 | 3.66E-42 | ||
| CDD | 6 | 157 | 152 | 2.56034E-101 | ||
| Pfam | 7 | 158 | 152 | 4.7E-36 | ||
| ProSiteProfiles | 8 | 168 | 161 | 39.65 | ||
| ProSitePatterns | 12 | 59 | 48 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Endopeptidase activity | Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain. | ||
| Molecular function | Threonine-type endopeptidase activity | Catalysis of the hydrolysis of internal peptide bonds in a polypeptide chain by a mechanism in which the hydroxyl group of a threonine residue at the active center acts as a nucleophile. | ||
| Cellular component | Proteasome core complex | A multisubunit barrel shaped endoprotease complex, which is the core of the proteasome complex. | ||
| Cellular component | Proteasome core complex, beta-subunit complex | The proteasome core subcomplex that constitutes the two inner rings of the proteasome core complex. An example of this component is found in Mus musculus. | ||
| Biological process | Proteasome-mediated ubiquitin-dependent protein catabolic process | The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of ubiquitin, and mediated by the proteasome. | ||
| Biological process | Proteolysis involved in cellular protein catabolic process | The hydrolysis of a peptide bond or bonds within a protein as part of the chemical reactions and pathways resulting in the breakdown of a protein by individual cells. |
Expression pattern of LotjaGi1g1v0157600.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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