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LotjaGi1g1v0167500.1

Overview

Field Value
Gene ID LotjaGi1g1v0167500
Transcript ID LotjaGi1g1v0167500.1
Lotus japonicus genome version Gifu v1.2
Description Ribosome maturation protein SBDS; TAIR: AT1G43860.1 sequence-specific DNA binding transcription factor; Swiss-Prot: sp|P70122|SBDS_MOUSE Ribosome maturation protein SBDS; TrEMBL-Plants: tr|I3SB34|I3SB34_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0167500
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:31811005..31814166) extracted from Lotus japonicus Gifu genome v1.2.

ATTTTTTGGACGATTGTGACTCTATTGGTTGAAACGCACAACCAAACACATACTTCACATACAAAATCGCTTTAGCTTCA ACTCTCTTATTCCACATCAATTTATAAAACCCAATTTCATCCAAAAATCAATTTCAGTTGTGAAAAAAGTTAATCCAAAC ACTAATTCAGATTTTATCATAGTAGGCGCGAGGTTTATATAAATCTTGACGGAAACAGAAAGGCTCGAGGGAGAAGAAGG TAGAGATGTCTCGAACGCTGGTGCAACCGATAGGTCAGAAGAGGCTAACGAACGTGGCGGTGGTGCGTCTCAAGAAGCAC GGCAACCGCTTCGAAATCGCCTGCTATCCGAACACCGTCCTTTCTTGGCGTTCCGGCGTCGAGAAGGACATCGATGAAGT CTTGCAGTCTCACACCGTTTATTCCAATGTTTCCAAAGGAGTTCTTGCCAAGTCTAAGGATTTGATCGCTGCTTTTGGAA CCGATGATCACTCCGCCATATGCTTAGAGGTCGGTCTAGTATTAACATTCAATTTTGGCTTTTCATTTCGAGTAAATAAT TTTAATATATGTATGTGAATTCAATATGTTTAGGTATAGAAGGAGAAATGATTTTGGGAATGGTATGAAGTGCTTTAGGA AGATTAAGAGTAGATTTAAGCATGCTGTTAGTTTCTGAAAAATGCATGTTTGTTGAATCAGTCTTTAGACAATGGAAGTT GTGTTAAAGGTAGCATCTAAATGGCACTTTGTCCAATAATTTTGTGCTGAATACACATTTCATCAATCAAATTAGTCATT AAGTTATGTGACATGACAACTACTTTGATGGACAAAGTACCCGTAAGGCGTAAGCCCCATTTTCGTAAGATTTGTCACAT TAATCTCTGGATATTTAACAGAATAAATGGCATTTGCCTGTTTTTTTCTCAGTCGCATTAGTCTTAAATTCATGGTTTTT GTCGGTCATGTAAAGCCGTCATTAGGAACTAATGTATCGTGACATGATAGTTAGAGCCTTTTTGTTTATGTAAGGGTGGG ACTAATATGAACAAATTTTCCAGGTGATGAAGTGCTTATTACTTCATGTTAGGAACTAGTATGAGTGACCAGTGCTGCCT TTTTTGGGATTAATTTAATCATTGACTATTTGGGTTGAGGGCATGTGTGTGAGTGTGAAAAATGGTTTGTGGTTTCAGAT TTTGAAGAAGGGGGAGCTTCAGGTTGCTGGCAAAGAGAGGGAGTCATTGCTGTCGAGTCAGTTTAGGGACATTGCCACCA TTGTCATGCACAAGACTTACAATCCGGAGACTCAGCGCCCTTACACCATCAGCATGATTGAACGCCTTATGAGGGAAATC CATTTTGCTGTTGATCCACACAGCACTTCCAAGAAGCAGGTTTTTCTCTCATTCTGACATTCTATACAGTCCTATAATCA TCTTGTTAAATAAAGGGTTATGATGATTTCCTGATGGTGATTATCGTATTGAAAATTATATCAGTATATACTAAATAAGA GTGGGTCTATGTGTAATACAGGCTTTGGAGTTGATTCACGAGCTTCAAAAGCATTTCCCTATAAAAAGGTGTCCATTAAG AATACGAGCTGCTGCTCCGGAGGACCAAGTGTCTGCCCTTTTGGAGAAGCTGAATGAGTGGAAGGCAACCGTTATTTCTA AAGAAGGTTCTGCTGCTCAGTTATCTGTTGTAAGTCCTCTGTTATTGCTCATTTAGTTGTATACAAATTTTGTTCATGGT TCCATTCCATTTTCAATTTAGAAACAGAGGTTTTTGGTTTGAAAGCATCATTATCATTGGTGGTTTAAAGATTTCCTTAT TATTAACTCTTTTCATCTAAAACAAAATTGTGGGCCATGTTTTCAACAGTTATGGTAATTCCAGGAATAAGTCAGCAAGT TTCTTTATACTGCATCTGTTCTGTTTATTAGTTTATGCTCATTAGTAAAATAAAACTGTAATTAACATGATCAAATATCT GGTTGGTGGCTTGCTGGCTGCTGCTATTAGCTGATTTATCTGATATTGGGCATCCAGTTGCTGTTTCTTGTGAGTTATAA CCAATGTATAACCGATGCGAAATTCAGTTTCATTTGTGGACATCCTCCCTAGCTTCACCCTCATCCCGACCAAATAACCC ATTAAAAATGCAAAGGGGAAGTCCGTTTGTATAACTGCTCCATGATTCTTCCATTTCAAATGTTATTAATCCCTGTTTAG CATTAACAAAGAAGAATGCGTTCTAAAAGTTTTGAGGTCTGGTATGTCCACGTATATGTATGTGTTTATCTTGATTCCGC TACGGTGTATTGAAGAAAATTGGTGTTCGTTTGCAGATTTTTGAGTTGGAACCTGGTCTATATAAGGACTGTCATGACTT CATAATGGATAAGATGCATGGAAGATTTGAAGTTCTTGCTCACTCTCTTTACGTGGAGGGGGATACCCAAGTGGATCAAT ACAATGATGATGAGGATATGCATGCACCATTGTCCAAAGAAACTAGTGAATCTGTGCTTGAGCTGAATGATAAACTTGAA AAGCAAACAATTTCATCTACGAGTAAGCCAACAGAGGGGCAGCAATCAAAGCAAAACAAGTGCAACACATGTAATGTTTC ATTTGAAGACTCTAAGCTGTACAGGGAACACCACAAGACTGATTGGCACAAACACAATATGAAGCGCAAGACAAGGCAAC TCCCACCACTTACCGAAGAAGAGTGCACGGCAGACATGGAACTGGGTGACTCAAAATCTGATTTAAAGGATTACTCATTT TGAGTTGACAATCTGTGTTAAAGATGTTACCAGGGAGATCACTTTATGTCAAGTCTATACTTGTGCAAATTTTGTCATGA TAGTCTGGGTTGTTGTAAAATGTTCACAGGGAAGTCCTTAAAATGTAAATTACCTTGAGCATGCTCCATTAACAATTACA TAGATCAATGCTCTTTGTTTTTCCTTTTGTCTGGCAGTGTTGTAATTCACCGTGCATATGAAACTAAAGATTGTTGTAGA TTTGCTTCATCATGGGCAGTGGTTAAAGAAGAAGCTGGTTGTCTCCCGATGTATTACTATTGAGTTTTTGGTAAATATGA TTTTAGTGCCTTAAATATTTCCTATATATGATTTAAGCTCCT
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0167500.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGTCTCGAACGCTGGTGCAACCGATAGGTCAGAAGAGGCTAACGAACGTGGCGGTGGTGCGTCTCAAGAAGCACGGCAA CCGCTTCGAAATCGCCTGCTATCCGAACACCGTCCTTTCTTGGCGTTCCGGCGTCGAGAAGGACATCGATGAAGTCTTGC AGTCTCACACCGTTTATTCCAATGTTTCCAAAGGAGTTCTTGCCAAGTCTAAGGATTTGATCGCTGCTTTTGGAACCGAT GATCACTCCGCCATATGCTTAGAGATTTTGAAGAAGGGGGAGCTTCAGGTTGCTGGCAAAGAGAGGGAGTCATTGCTGTC GAGTCAGTTTAGGGACATTGCCACCATTGTCATGCACAAGACTTACAATCCGGAGACTCAGCGCCCTTACACCATCAGCA TGATTGAACGCCTTATGAGGGAAATCCATTTTGCTGTTGATCCACACAGCACTTCCAAGAAGCAGGCTTTGGAGTTGATT CACGAGCTTCAAAAGCATTTCCCTATAAAAAGGTGTCCATTAAGAATACGAGCTGCTGCTCCGGAGGACCAAGTGTCTGC CCTTTTGGAGAAGCTGAATGAGTGGAAGGCAACCGTTATTTCTAAAGAAGGTTCTGCTGCTCAGTTATCTGTTATTTTTG AGTTGGAACCTGGTCTATATAAGGACTGTCATGACTTCATAATGGATAAGATGCATGGAAGATTTGAAGTTCTTGCTCAC TCTCTTTACGTGGAGGGGGATACCCAAGTGGATCAATACAATGATGATGAGGATATGCATGCACCATTGTCCAAAGAAAC TAGTGAATCTGTGCTTGAGCTGAATGATAAACTTGAAAAGCAAACAATTTCATCTACGAGTAAGCCAACAGAGGGGCAGC AATCAAAGCAAAACAAGTGCAACACATGTAATGTTTCATTTGAAGACTCTAAGCTGTACAGGGAACACCACAAGACTGAT TGGCACAAACACAATATGAAGCGCAAGACAAGGCAACTCCCACCACTTACCGAAGAAGAGTGCACGGCAGACATGGAACT GGGTGACTCAAAATCTGATTTAAAGGATTACTCATTTTGA
Download CDS Sequence

Protein sequence (LotjaGi1g1v0167500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MSRTLVQPIGQKRLTNVAVVRLKKHGNRFEIACYPNTVLSWRSGVEKDIDEVLQSHTVYSNVSKGVLAKSKDLIAAFGTD DHSAICLEILKKGELQVAGKERESLLSSQFRDIATIVMHKTYNPETQRPYTISMIERLMREIHFAVDPHSTSKKQALELI HELQKHFPIKRCPLRIRAAAPEDQVSALLEKLNEWKATVISKEGSAAQLSVIFELEPGLYKDCHDFIMDKMHGRFEVLAH SLYVEGDTQVDQYNDDEDMHAPLSKETSESVLELNDKLEKQTISSTSKPTEGQQSKQNKCNTCNVSFEDSKLYREHHKTD WHKHNMKRKTRQLPPLTEEECTADMELGDSKSDLKDYSF
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR10927
1 250 250 3.6E-108
IPR039100
Gene3D
G3DSA:3.30.1250.10
1 96 96 3.8E-40
IPR036786
SUPERFAMILY
SSF89895
13 96 84 1.05E-28
IPR036786
TIGRFAM
TIGR00291
13 232 220 1.7E-49
IPR002140
Pfam
PF01172
16 102 87 6.5E-30
IPR019783
ProSitePatterns
PS01267
46 65 20 -
IPR018023
SUPERFAMILY
SSF109728
98 171 74 6.02E-22
IPR037188
Gene3D
G3DSA:1.10.10.900
100 172 73 1.8E-30
IPR037188
Pfam
PF09377
110 227 118 1.7E-27
IPR018978
Gene3D
G3DSA:3.30.70.240
174 251 78 4.9E-8 –
SUPERFAMILY
SSF57667
293 344 52 2.01E-6
IPR036236
ProSitePatterns
PS00028
300 322 23 -
IPR013087
MobiDBLite
mobidb-lite
322 359 38 - –
MobiDBLite
mobidb-lite
344 359 16 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003676
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Subterm of
GO:0042254
Biological process Ribosome biogenesis A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of ribosome subunits; includes transport to the sites of protein synthesis.
Subterm of
GO:0042256
Biological process Mature ribosome assembly The aggregation, arrangement and bonding together of the large and small ribosomal subunits into a functional ribosome.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0167500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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