Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

LotjaGi1g1v0168700.1

Overview

Field Value
Gene ID LotjaGi1g1v0168700
Transcript ID LotjaGi1g1v0168700.1
Lotus japonicus genome version Gifu v1.2
Description Acyl-[acyl]-carrier-protein] desaturase; TAIR: AT1G43800.1 Plant stearoyl-acyl-carrier-protein desaturase family protein; Swiss-Prot: sp|Q84VY3|STAD6_ARATH Stearoyl-[acyl]-carrier-protein] 9-desaturase 6, chloroplastic; TrEMBL-Plants: tr|A0A072VEM1|A0A072VEM1_MEDTR Stearoyl-acyl-carrier desaturase; Found in the gene: LotjaGi1g1v0168700
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:32075927..32078529) extracted from Lotus japonicus Gifu genome v1.2.

CATCATTCCACATGTACAACAAACCCCAAGCCAGATTGATACCCAAAACACCATGCACATTCAAACCTGCCACCCCATCA AGACCCTTCCATTGGCATGGACACCAAGAAACAACCACCACTACCGAACACACCGCCACCACCCCCCACCACCCAAGTCC GCCGCCTCCGCCTTACCGGCGCCACTCAAATCCCGAAAGACACACTCAATGCCACCAGAAAAGATGGAGATTTTCAAATC CCTGGAGTCTTGGGCTACTGATTCAGTCCTCCCCCTTCTGAAGCCCGTGGAGGAATGCTGGCAACCACAGCAATTTGTGC CTGACTCGTCACTCCCATTTGACGAGTTCACCGATCAGGTGAAGGAACTCAGGGAGCGGACGAAGGAGCTGCCGGATGAG TATTTTGTGGTGCTGGTCGGTGATATGGTGACGGAGGACGCGCTTCCGACGTACCAGAGCATGATCAATAAACTCGACGG CGTCGGCGATGAGATTGGGTCGAGTCCGAGCCCGTGGGCCGTGTGGACTCGGGCTTGGACGGCGGAGGAGAATAGGCATG GGGATTTGCTCAGGACTTACTTGTATCTTTCTGGTCGGGTAGATATGACCAGGATCGAGAAGACTGTGCAGTACCTCATT AAAGCTGGCATGGTGAGTTTTTAAGTTTATTACTATATAATTATTTTTCTATTTGCATTTATTGAATTGAATTGCATAAG TCATAATTCAAGTGATGCTTAAAAAACAATTACAATGCAGCTTGAAACTAAGTTATACTACTAAGGTATTCCATAGTTGA CTGCTGCTCTAGATGATTTGAGATCATTTTTTGTAGGTTGGGTAGTTATATATCGACAATTTTAAAATCTTAATATTATT GAAAATTTTAAAATATTCACATTGATCCTATACGCTTTAAAAAAAAAAAACATTGTGCCTATACTGATTGGTCATTGGTG ATTGGATACCTTACTTTAAAACACCCGTGATGTATAAATGAGATTCATGTTAATTCAGACAAAATAAGTTTTTTTTTTCA TTTAGAGATTTTTTTCATTTATTAAAATAAGTTAAAAATTGATTAATGTAAAACTAGTATACTGAGATCATATTGATCTA ATGTATATTTAATATTTAATATATGTGATCTGCACCTTGTTGAAACTCCAGTCACACTTTTAGTCAAATGTGATTGTGTC ACACTTAATATCTAGGATCCATCGATTCAAAAATACATAAAAAATTATTATAAATTAAAATTAAAATTTTGACATAATAT TTCTCCAGTAACTTCTAGAATATGTCATGCTCACACTAGTGCAAGTTCACTGTGCTCCAATTGACTCCATGATGGATAAT TGTGATCTCTAGTAAAACAAATCTACTAATTAAGCAAGTTGAAAGGTTATTTTAATATAATAATGTACAAGAAACATTTT CAGTAACAATATAATTTCAATTTTTTTAATAAAAATGTGATATTAGATTTTTGTTTGCATTGGACAGGACCCAGGGACAG AAAACAACCCATATTTGGGTTTCGTGTACACATCATTCCAGGAGCGAGCAACATTCGTGTCACACGGCAACACCGCGCGT CTCGCAAGGGAAGGCGGCGATCCAGTACTAGCGCGCATATGCGGCACCATAGCAGCAGACGAGAAGCGTCACGAGAATGC ATACGCGAGAATTGTCGAGAAGCTTCTAGAAGTAGACCCCGACGGCGCAATGGTGGCCATCGGCGACATGATGGCGAAGA AGATCACGATGCCGGCGCACCTCATGTACGACGGCCAAGATCCAAGGCTGTTCGAGCACTTCGCCGCCGTGGCACAGCGC ACCGGCGTGTACACCGCGAATGATTACGCTGATATTCTTGAGAATCTGATTGAACGGTGGAGGTTGGAGAAGCTGGTGGG ATTGAACGGTGAGGGGAGGAAGGCGCAGGATTTCGTGTGTGGGCTTGCGCCTAGGATTAGGAGGTTGCAGGAACGGGCTG ATGAACGGGCCCGTAAGATGAAGCCTCAAGGGGTTAAGTTTAGTTGGATATTTAATAATGAGGTGGTTTTGTGATGACTG GTGATCAACGGTCATGATGATGCACGTGACATGCATGTGACAGGATAGACAAGTTTGGTAAATGGAGAATGTGATGCTGC TACAAGTTTTGGCATTGTGAGATGTTTTGGTTGGTGTCCTAATAATAATAAGTAAAATGAACAATGTGGACTTTGCATAT AGTTGTTATGGTGGATGAAAAACTGGTGGGACTTAAAATATCATGTAATGTAATTTAATCGGCTTATAAAAAAAGTGTAA TGTACTTTAACCTTATCATCTTTTTTTTTTGTGTGATTTTTTCATCTAATGATTCGCTAATTTTATATTGATTTATTATT CACAAAAGAGAAGCAAGAGGTTTTGACTAAGCATTTTAAAATTTTCAAAAAAATTTGGAATGTGTGGAAATTTATTATTG ACATGACTAGATAATATAAAGCTGTATTTATTTATAAAATATTACTTTTTATCATCCAACCAACCTTCCCTACCTAATTC CTCGTAGAATGAACTAGTATTGAACTCGTGTCATGGAGAATGA
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0168700.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGCACATTCAAACCTGCCACCCCATCAAGACCCTTCCATTGGCATGGACACCAAGAAACAACCACCACTACCGAACACA CCGCCACCACCCCCCACCACCCAAGTCCGCCGCCTCCGCCTTACCGGCGCCACTCAAATCCCGAAAGACACACTCAATGC CACCAGAAAAGATGGAGATTTTCAAATCCCTGGAGTCTTGGGCTACTGATTCAGTCCTCCCCCTTCTGAAGCCCGTGGAG GAATGCTGGCAACCACAGCAATTTGTGCCTGACTCGTCACTCCCATTTGACGAGTTCACCGATCAGGTGAAGGAACTCAG GGAGCGGACGAAGGAGCTGCCGGATGAGTATTTTGTGGTGCTGGTCGGTGATATGGTGACGGAGGACGCGCTTCCGACGT ACCAGAGCATGATCAATAAACTCGACGGCGTCGGCGATGAGATTGGGTCGAGTCCGAGCCCGTGGGCCGTGTGGACTCGG GCTTGGACGGCGGAGGAGAATAGGCATGGGGATTTGCTCAGGACTTACTTGTATCTTTCTGGTCGGGTAGATATGACCAG GATCGAGAAGACTGTGCAGTACCTCATTAAAGCTGGCATGGACCCAGGGACAGAAAACAACCCATATTTGGGTTTCGTGT ACACATCATTCCAGGAGCGAGCAACATTCGTGTCACACGGCAACACCGCGCGTCTCGCAAGGGAAGGCGGCGATCCAGTA CTAGCGCGCATATGCGGCACCATAGCAGCAGACGAGAAGCGTCACGAGAATGCATACGCGAGAATTGTCGAGAAGCTTCT AGAAGTAGACCCCGACGGCGCAATGGTGGCCATCGGCGACATGATGGCGAAGAAGATCACGATGCCGGCGCACCTCATGT ACGACGGCCAAGATCCAAGGCTGTTCGAGCACTTCGCCGCCGTGGCACAGCGCACCGGCGTGTACACCGCGAATGATTAC GCTGATATTCTTGAGAATCTGATTGAACGGTGGAGGTTGGAGAAGCTGGTGGGATTGAACGGTGAGGGGAGGAAGGCGCA GGATTTCGTGTGTGGGCTTGCGCCTAGGATTAGGAGGTTGCAGGAACGGGCTGATGAACGGGCCCGTAAGATGAAGCCTC AAGGGGTTAAGTTTAGTTGGATATTTAATAATGAGGTGGTTTTGTGA
Download CDS Sequence

Protein sequence (LotjaGi1g1v0168700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MHIQTCHPIKTLPLAWTPRNNHHYRTHRHHPPPPKSAASALPAPLKSRKTHSMPPEKMEIFKSLESWATDSVLPLLKPVE ECWQPQQFVPDSSLPFDEFTDQVKELRERTKELPDEYFVVLVGDMVTEDALPTYQSMINKLDGVGDEIGSSPSPWAVWTR AWTAEENRHGDLLRTYLYLSGRVDMTRIEKTVQYLIKAGMDPGTENNPYLGFVYTSFQERATFVSHGNTARLAREGGDPV LARICGTIAADEKRHENAYARIVEKLLEVDPDGAMVAIGDMMAKKITMPAHLMYDGQDPRLFEHFAAVAQRTGVYTANDY ADILENLIERWRLEKLVGLNGEGRKAQDFVCGLAPRIRRLQERADERARKMKPQGVKFSWIFNNEVVL
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PIRSF
PIRSF000346
15 388 374 5.6E-177
IPR005067
MobiDBLite
mobidb-lite
21 53 33 - –
PANTHER
PTHR31155:SF31
22 387 366 1.0E-208 –
PANTHER
PTHR31155
22 387 366 1.0E-208
IPR005067
Gene3D
G3DSA:1.10.620.20
41 388 348 8.6E-168
IPR012348
SUPERFAMILY
SSF47240
45 387 343 7.56E-125
IPR009078
Pfam
PF03405
56 382 327 2.8E-153
IPR005067
CDD
cd01050
56 364 309 7.39344E-172
IPR005067

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0006631
Biological process Fatty acid metabolic process The chemical reactions and pathways involving fatty acids, aliphatic monocarboxylic acids liberated from naturally occurring fats and oils by hydrolysis.
Subterm of
GO:0016491
Molecular function Oxidoreductase activity Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
Subterm of
GO:0045300
Molecular function Acyl-[acyl-carrier-protein] desaturase activity Catalysis of the reaction: stearoyl-[acyl-carrier protein] + reduced acceptor + O2 = oleoyl-[acyl-carrier protein] + acceptor + H2O. The enzyme requires ferredoxin.
Subterm of
GO:0055114
Biological process Oxidation-reduction process A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
Subterm of

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0168700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…