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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0172600 |
| Transcript ID | LotjaGi1g1v0172600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Glucosamine-6-phosphate deaminase; TAIR: AT5G24400.1 NagB/RpiA/CoA transferase-like superfamily protein; Swiss-Prot: sp|A2Z3C4|6PGL4_ORYSI Probable 6-phosphogluconolactonase 4, chloroplastic; TrEMBL-Plants: tr|A0A072VQL3|A0A072VQL3_MEDTR Glucosamine-6-phosphate isomerase/6-phosphogluconolactonase; Found in the gene: LotjaGi1g1v0172600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:32843356..32845774) extracted from Lotus japonicus Gifu genome v1.2.
CCAATTGCCAAAAAAAACCAAATGAAAACGCAGTACACACTCAATTAATCTTTGCAATACCATAAATGGCTTTCTCAGCA ACTTTCCCTACTTCATTCACAATCCAAAGTAGCTCAGTGTATGCACAAAAATCAAATCCAACTCAATCATATCCAAAGAC CTCGTTAGACCCACTACCCATAATTGGGAAGAAACTCGTTTACAATCCTCTAAGGTACAACAAAGTGTTTTCTCCCAAGA GATCATGTGCTGGCAAAGTGAATGCATCAATGAAGTGGGAGAAAGGTTATGCAAACGTTGAGGTGTTCAGTAAGGAGCAT CTTGCTGTGTCGTTGGCTTATGATGTTGCTCAACTCTCTAACAGATTCACCAAAGAGAGAGGTGCTTTCACTGTTGTTTT ATCTGGCGGCTCACTCATCAAGTACCTCAGGTGACTGTTACAAGGGCATTTTATTCATTTTAATTCCATTGTAAAAGAGA TGCATGCACTTCTTTTATAGATAAAGTTAATTGATAAGTAAAGTAAAATCTAAAAATGTAGTATTTACCTTAAATAACAT GATAATAATCTATTAAATTATTCAATACGGGTACAATACCCAAAAAAAATTCTGGGTAACACAGAATTTACCAACTATCT CTCTGTTTCTCCTCTGTTCTCCACTTTTATATATTTTATATATTTTAGGAAATTGGCTGAAACTCCCTATGCTGAATCCA TAGAGTGGTCAAAGTGGCATGTTTTCTGGGTGGATGAGAGAGTCGTGGCAAAGGATGACTTGGAAAGTAATTATAAGCTT GCCTATGATGGATTTCTCTCCAAGGTAAGTCCCTGCATTGTGCCATAGATATTTTAGCTTCAAGAATTAATAAGGATGGT TTCAAACTAACTATTTAGATTTTGGATGCGGGATTGTCGATCTAAATCACCCATGTAGATTACTAACCTACAACTCAATG AATAAATACGATTTTTTTAAAATAAATAAAATATAGAAATTTCAACTCACTTAATTTCAATGTGATTGAATGATGAATTA TTTAACTCAAAATTTCTCATAGGTTATTTAGACAACTCTTTTTGATGCTCATTAAATGTCAATTTTCTATCAGTTATTGG ATAATAAATAACATTATAATAAATAACATTTGGATCAAATTTATTCAATTTTGTAAATTTATTTTTATTCAATTTCAAAA ATAGAAAAATTCAATTTGAGCAATTGAAACTATTTGCATTAAAATCATGCATTCCTAAAAATTAAACATTTTCTATGCCA TTGTTGTTTTTGAAGGTACCAATTCCTCCTGTAAATGTTTATGCCATTGATGATGCCCTATCACCTGATGGAGCAGCTGA TGTTTGTGAAACAAATATCAGACGCTTGATTAAGAGTAATGTCATTGCTACATCAACAAATGGGTTTCCAAAATTTGATC TCATGCTTCTAGGTATGGGCCCGGATGGGCACGTGGCTTCATTGTTCCCAGGTCATCCTCTTCTTAAGGAGAATCAGAAA TGGGTCACCTTCATCAAGGACTCCCCAAAACCACCGTCGGAAAGAATCACTTTTACCTTTCCAGTGATCAACTCTTCTTC GAACGTAGCAATGGTAGTGACCGGCGCAGGTAAAGCAAATGTCGTGCACTCTGCACTAGAGGATGATAATAAAACTGATG ATAAGTTGCCTGTTGAGCTGGTCTCACCTGAAGGAGAAATGAAATGGTACTTGGATAAAGGTGCTGCTTCAAAGCTCTTT AAAGAGTAGAAGCATATGATATTCAAGTCAAATATACCTTTATTTATTAATAACTACTTTTTCCAATCATAATAAAATTG TCAGTAATAAAACCAACATCGCTTATAAATAGACCGCATAACAGTAGCGACCACACTCATACACTCATTTTTGTGGCCGT TTTTATTGCTACAAGTCATGGCATTATGACGATAAATTTTTTTTCACAAAATTGAGTGTATAAATGTGAGCCCTACAATT AAACATTCTATATATATTTTTAGTAGTTCTTCTATGGCGGAGAAATTTGTAAGTTGTTTGACAAGAAGTTTATTTTGTCA ATAATATGAAAATTGTTCGGGAAAATGTACTTGAAAGTTGAAACAACACTACTAGTACTATGTGTTACTATGCTTTTTTT TTGTAGATAAATAGAAATTCACGAATAATCTTGGGATTTGATTTAAATATTTTAGGTTATTTTTATTGAAAACGTTGAAC AGTCATTATAAATTTTGTATGAATTGATGGAAACCAATGAAGAAAAATTAATTGTGAAATGAATAATTCCAAACAGCAAA AGTTTGGAATGATCAAAGAAATGAAAAGATAAAATAAAACATAATTGCACTGGATGTAAAAGAAAAATTTCACAATAACA TACACAAGATCGATCTCTT
CDS sequence (LotjaGi1g1v0172600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTTTCTCAGCAACTTTCCCTACTTCATTCACAATCCAAAGTAGCTCAGTGTATGCACAAAAATCAAATCCAACTCA ATCATATCCAAAGACCTCGTTAGACCCACTACCCATAATTGGGAAGAAACTCGTTTACAATCCTCTAAGGTACAACAAAG TGTTTTCTCCCAAGAGATCATGTGCTGGCAAAGTGAATGCATCAATGAAGTGGGAGAAAGGTTATGCAAACGTTGAGGTG TTCAGTAAGGAGCATCTTGCTGTGTCGTTGGCTTATGATGTTGCTCAACTCTCTAACAGATTCACCAAAGAGAGAGGTGC TTTCACTGTTGTTTTATCTGGCGGCTCACTCATCAAGTACCTCAGGAAATTGGCTGAAACTCCCTATGCTGAATCCATAG AGTGGTCAAAGTGGCATGTTTTCTGGGTGGATGAGAGAGTCGTGGCAAAGGATGACTTGGAAAGTAATTATAAGCTTGCC TATGATGGATTTCTCTCCAAGGTACCAATTCCTCCTGTAAATGTTTATGCCATTGATGATGCCCTATCACCTGATGGAGC AGCTGATGTTTGTGAAACAAATATCAGACGCTTGATTAAGAGTAATGTCATTGCTACATCAACAAATGGGTTTCCAAAAT TTGATCTCATGCTTCTAGGTATGGGCCCGGATGGGCACGTGGCTTCATTGTTCCCAGGTCATCCTCTTCTTAAGGAGAAT CAGAAATGGGTCACCTTCATCAAGGACTCCCCAAAACCACCGTCGGAAAGAATCACTTTTACCTTTCCAGTGATCAACTC TTCTTCGAACGTAGCAATGGTAGTGACCGGCGCAGGTAAAGCAAATGTCGTGCACTCTGCACTAGAGGATGATAATAAAA CTGATGATAAGTTGCCTGTTGAGCTGGTCTCACCTGAAGGAGAAATGAAATGGTACTTGGATAAAGGTGCTGCTTCAAAG CTCTTTAAAGAGTAG
Protein sequence (LotjaGi1g1v0172600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAFSATFPTSFTIQSSSVYAQKSNPTQSYPKTSLDPLPIIGKKLVYNPLRYNKVFSPKRSCAGKVNASMKWEKGYANVEV FSKEHLAVSLAYDVAQLSNRFTKERGAFTVVLSGGSLIKYLRKLAETPYAESIEWSKWHVFWVDERVVAKDDLESNYKLA YDGFLSKVPIPPVNVYAIDDALSPDGAADVCETNIRRLIKSNVIATSTNGFPKFDLMLLGMGPDGHVASLFPGHPLLKEN QKWVTFIKDSPKPPSERITFTFPVINSSSNVAMVVTGAGKANVVHSALEDDNKTDDKLPVELVSPEGEMKWYLDKGAASK LFKE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 324 | 324 | 9.4E-186 | ||
| Phobius | 1 | 20 | 20 | - | – | |
| PANTHER | 1 | 324 | 324 | 9.4E-186 | – | |
| Phobius | 1 | 1 | 1 | - | – | |
| Phobius | 2 | 13 | 12 | - | – | |
| Phobius | 14 | 20 | 7 | - | – | |
| Phobius | 21 | 324 | 304 | - | – | |
| Gene3D | 75 | 321 | 247 | 1.2E-78 | – | |
| TIGRFAM | 82 | 321 | 240 | 2.4E-64 | ||
| SUPERFAMILY | 82 | 321 | 240 | 1.53E-65 | ||
| Pfam | 83 | 311 | 229 | 1.6E-70 | ||
| CDD | 84 | 313 | 230 | 7.8867E-94 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Carbohydrate metabolic process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. | ||
| Biological process | Pentose-phosphate shunt | The glucose-6-phosphate catabolic process in which, coupled to NADPH synthesis, glucose-6-P is oxidized with the formation of carbon dioxide (CO2) and ribulose 5-phosphate; ribulose 5-P then enters a series of reactions interconverting sugar phosphates. The pentose phosphate pathway is a major source of reducing equivalents for biosynthesis reactions and is also important for the conversion of hexoses to pentoses. | ||
| Molecular function | 6-phosphogluconolactonase activity | Catalysis of the reaction: 6-O-phosphono-D-glucono-1,5-lactone + H(2)O = 6-phospho-D-gluconate + H(+). |
Expression pattern of LotjaGi1g1v0172600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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