Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0181500 |
| Transcript ID | LotjaGi1g1v0181500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RING-finger ubiquitin ligase; TAIR: AT3G47990.1 SUGAR-INSENSITIVE 3; Swiss-Prot: sp|Q8GYT9|SIS3_ARATH E3 ubiquitin-protein ligase SIS3; TrEMBL-Plants: tr|K7KMP9|K7KMP9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0181500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:35379602..35386069) extracted from Lotus japonicus Gifu genome v1.2.
CTTTTTCAATCCGTAAAACAAACGCCTCGTGAATAGTGGAAAAAATGTAAGCCCTTTGTAGTAGTTATAGATACTTCATG ATGACTTATTGACTTCAATGCCCGTTTCAAACCATGCATAAAAAAAAACATTAAAATTGATCCTTAAAAATGACTAAACT AATCACTATTAAATTTTTGGATGATGAAAAAAAGGGTAAAATAAGGTGAAAATGAAGGTAAAGAGTGGGTGAGTTCACTT CAGTTATAACTAATCACTATTCAATTCCCTCCCTCGCTCTCTCTTGCCTTCAATGTCCAAATTGAAGATCAACAACTCAT TTCATGAAACATCCTTCTCCATCTCCAATTCCCCTCTCCTCCAACTTCCATGCATTTTCCACTGCTGTATAACCCCCTGA TACGACACCGCTTCATTCTAGGGTTTCCCCTCCCGCCATGGCCGTCAGAGGAGTCTATTTCAAATGGTTAGTCTCGATCT CGATCTTTCTCTCTTCATTCTCTTCATCCCAATTTGATGATCATCGAATCGAAACACGCTTCTTGCTTGCAGGTACGATG GCTTTTTCTTGTCCATGCTCGCCATCAGTGTGTATCCTTCAACAATTTTCACCTTCTGCTTGATTCTCCTAGTTTTTCTT TCATTCTTCCAAATTTTTCATTACTATGATGAGCAAAAAGAATGAAATTAAACATGAATTTCATCAAATTCAGCAAATGG GTTATCGCATAATCTGTATTTTCTTTGACAATTTGACTTATAGAGCTATTGTGGCTATTAATTGGAAGCGGTACCATTCG TGTGCTCACCCGTTGCACATTTGGATTGTGGTAGGGTTTTTTTTATTTATTTAATGATTGGTTTTTTGATTTTTTGATTT TTTGATTACTAGATTGCTATTTCTGGTTTCTTGATGTTGTTGACTCAGAAGTTATGCAATTGTTGTTTTTCTTTTGATGG TGCAGGTTCACTACACTACTGTTTTTGTTTTCCGGGTTTTGATGTTTGTTGATAATGGCCTTGCTTCGGGAATGGGTTTG TAAGGCCTTTCAATCTTTCATCTTTTGAGGTTATTGTTCTCGAATTTCTTATTCCAATTTGAATAAAGAAAATTGTAAGT GCATTTGTTAATATAGGAACTAGAAAGTCTGGGTGAAATTGGAGTACAATGAATGAATTGATGATATATGAGGTGTGGTA TTTGATTGAAAATTAGGGATATCTGAATAAGGGTCAAGGGAGGGCTTGCATTTTGTTATTACTATTATTTTTGCACATAG AATAATCAGGGTGTCAACTAATAGATTGTTAATGGAATCAATCTAGATGAAATCAATGTGACCGTGTTTAGTATGGGTAG GACTTTTTGGTTTTAGCTTTTAACATTAGAGAATAGTTGTTCAGGTAGTGTAGCCATTTGCTTGAAATGGTGCGGCAATT CCTGCTATAGATAGCATGGCTTGGGTTAAGCCTATACTGTAGAAATGTATGGCCAAATTTCTATAAATAGATAGTCACTG TGTCCTGTGATTTAATGGGAAGTTACTTTTTATATATTACACTTTGGAATATGAAGTTTCCGGTTTTCATTTCACTTAAT TTTACTTGACTGTTAAGGGTCAGAAACTCAAGTGCAAAATCATTTTTTTCGTGGCTGATTTCTCTGATTTCATGACATAA AACTCACTAAACTGGTCTGGATTTTTAGGAATTTGTGAAATCAATTTACTAATTCAGATGCTTTTATTTGTCCACTCTTT TGCCAATGCTTCTAGAGATTTTGGGTGGCAGCAGAGGTATGCTCGATTTTGTGGAAGAGTAGTTGTGCTTTCAATCCTTT CAATGCTTTTCTACCCATTTCTTTGGGCTTGGACAATAACTGGTACCCTGTGGTTCAACAATTCTAAAACCTGTGTACGT TTTATTTTTATATAATACTCAATGGTACTTTTTTAAACAAATGCATAGTGCTTAATCTAAATAATTATGTGCAGTTGCCT GGACTGGGTCAGAAATGGGGCTTCCTCATCTGGTTACTTTTTAGCTACTGTGGTCTCCTTTGTATTGCTAGCCTGTCAAT CAGGAAGGTTAGCGGTTCTCTATGTTACCCATTAGATGTTTCTATGACTTTGTTTCCACTTTTCATAATTAAAATGCACT AAGAAAAACTTTTTTGCTTAACATGTCATTCTATTTTTGTTACTAAATGACCTATCAGCTGCACATGTTTGGAGAGGCTG TTTCCTTCATTGTTTCTTATCTCTCTTTTGGTCCTCTTTCAAGTTCTAGTTTGGTTAATTCCATGCAGTGGTTGACACGG AGACAAGCATATTTGTTAGATGCCCAACAGGGGATTCCTGTATCCGAATATGGGGTAAGTTTTACCTTTAGGTCCTTTAC TGTTTTTCATATGTTTGACATATGTACCCATCTTGATGTAAACCAAAGAGCCCTTATTGGAGCTTATTTAGTGCATTTTC TAGCACTCACGGAAACTCCATTTTGTCATGGCATGAAACTGCTATGGTTGGCATCAAACAGGGGTATTTCTAAACTGTAT CCTGAATGAACTTCTCTTCCTCTTCTCCCTATCAAAATGAAGGGACATAAAAATATTCTTATTTTGGAACTGTGTAATAA CTTTGGTTCTTTCTTATGAACTTTAACTAATCTGGCAATGATGCATCCTGTAAGCTGCCCATTTGGAGACTGCTAATTAA CATTTTAGATTCTTTGGTTTTGTGCAAATTGTCTACATCGTATAATGAATTCAATTTATCACAGTTTAGCTCTTCTAGAT TCTGAATAAGTTATGCTGTCTTCAGCCACCAGTTTATGGTTGGCTGTTCTGTTTGTTGTCCTTATATAACACTGTTCTAT TGCACATTGTTACTGAGACACAAATCCTTGTTATTTGGTAACAAACTGTTAATTAACGAGCTGTATCAATTTTTATCATA TCTCATTATCTCATGCAAACTTAATATCCTCTATGACTTTCCCGGATCTCCTTCAAGCTGTGGAGAAAGTATTGTTACCG TGTCCTGCTGCTTGTTCTTTCTTAAGTGTTGTGCCAATACCATTTTTCTAATCGTGTCTCATCATTTCAAACATGTTTCT TATTTGGGGTCCATGGGGGTTTTTAGAAATCTAAGATGGTATTTGGTTTGTTTTCATGCTGTCATTTTCATCTTTTATTA TATGTTTTTATCATAACAGCAACAATAACAACAAAAGTCCTACCGCACTAAGTGAGGTCGGCTATATGGATCAGAATACG CCATTGAGCTAAAACAAGAACCAGATTTTGAGGGATAGTATTGATAATGAGGCCATTTTTAACAATATCTTCCAATGTTC TTTTTGGTCTCCCTCTACCCCTCTACACAAGACTAAAGACCATATGTTATCGAATCTTCTCACTGTGCCTCCAAAGGTCT TCTCTGTACATGTCCATACCGCCTTAATTGATTTTCCGTCATCTTCTCCATGATAGGCGCTACCCCAATATCTCCTCTTA TACGATCATTGCATATTCTATCCTTTCCAGTGTGGTCACTCATCCACCTTAATATTCTCATTTCTGCTAGTCATGTTTTT TCTCATGTTTTCCTGTTAAAGCCCTACATTCGCTACCATAGAGGATAGCAAGTCTTAAAGCAGTTTGGTAAAACTTTCCT TTGAACTTAGTAGGTACTTTGCAGTCACAAATAACTCCTAATGTTTTTCTTTGTGTAACATCTTTGTTGATTTCCCCATT ATCTTGTATAATTGATCCAAGGTACTTAAACTATGAAAACTGTGGTATGATGTCGTTTCCAAGTTTTACTTGCAGATTAC TTCCAACATCAGTCTTACTAAAATTGCAATGCATGTACTCTGTATTACTCGTGCTTAATTCTTTCTCCAACTCTCAAGTT TATAATCATTACGAAAATTCCACCTGATTTTCTTTTTGTTTCCTGTTTTTAAAATTTTGTGAAGGAAACAATGTAAACAA CTTGAAAATGGAAACATGAAAATAGAAAAAAAAAACTCTACATTCCTATTTGATTCTCCATAGTTTAGGACTACAGGATG GTATTGGTAACTGTTGGTATTTTTTTGTGTCAGGTTCTAATTGAAATGATCCGAGTGCCAGATTGGGCATTTGAAGCTGC AGGTCAAGAAACAAGGGGCATGGGCCAAGATGTTACTCCATATCATCCTGGAATTTACCTAACTCCAGCTCAGGTTATTT TAGCTTATGTTTCTAGATGTCTTTACTCTTTATCATATATTGGAATTCTCATGAATTATTCATATCTTGTGCTTTTGCAT AATTTGTCGGTTAGGATTATTTGTCAATTCTACTGCTGATTGTTGGGTTTCTTGTTGGAGTTGAATACAGAGAGAAGCAG TTGAAGCTTTAATTCAGGAACTCCCAAAGTTCAGTTTAAAAGCTGTTCCTACTGATTGCAGTGAATGTCTCGTTTGCTTA GAAGAGTTCCATGAAGGGAATGAGGTATACTTTTTCATAATTAAGGGTCCAAGGTCAGGCATCATATTATTTACTATGTG CTAGTGAAAAACATGCTTTTATCCGATTACTTGAATAGCTGATGGACCATGTTGCCCCATCTGACTACATATGGGGCCTA TTTGGTAATAGTAAAAATTATACATAGATGCGCTTACTGAACATATTCAAGAGATGATGCAAACATGCATGCTTTTTGTA GATGATATGATTTTAGTGGGAGAGTTGCGAGAAGATATGAATTGTAAGTTAGAGATATAAAGACAAGGCTTAGGAAACAC ATGGCTTCCATCTATGTAGAAGTAAAACGGAGTATATGAATGCAAGTTTAACTAGAGACAAAAAACCCGAATGGTAGAGG TGAAACTTGGAAACATAAAATATAACAAGTATCACCCTCTAAGCTCCTTGGGTCTGTCACACGAAATGACAAGGAGAGGG AGGGAGATGTCAACCATCGAAATCAAGTAAGGGGGATGAAATAGTGAAAATTTGAGCATGATTTGTGAGAAAATAGTATT TCTCAAGCTTAAAGGATTTTACAGTTCAGTTATAAGACTGTCGATATTGCATGCGACTGAATGTTGAGCAATAAGGAGCC AACAAAAAAGTAAAAATACTCACAGAAATCAGAATGTTAAGATGAATGATGGTTATACAAGACGAAATATCATTACAAAT GCCATCATTAAGAAGAAAGTTAGGGTAGCTCCTATTGTAGAAAAGTTGGTAGTCTCGCCTTTGATGGTTTGAACATGAGT AGATAAGGTCTATAGAAATACAAGGAGGGTTGACCTGATTGAGGAGATGTCAAATAGTCAAATAGTCAGAGATTGAGGAA AACCAAGAAAAACTATACGCTGAACAATTAAATGAGATTTATAGTTTAATGTTTTATTTTTGAACTAAATGCATGATAGA GAATATGGTGTCATAAGATTCGGGCACATGCTTATTGGAACTTATCTATTAAAAAATGCACTAATTAAACTCAAATAAGT GTTATTTGGTTTGCATCCAAACGTGTACCTACCTACTACTACTACAGTACTGCAGATTCCATCAATTTCTTTTCTTCGAA TCTTCCATAAGTTCTGTTGTTTATCAAATTACTTTAGCTCTAAACTAGTAAGGGAATTTAGTTGTGATATATGCCAGTGT AATTGATTATTTCTAACTTGATGTGGTGAAGGTCCGTGGCCTGCCGTGTGCTCACAATTTTCATGTAGAATGCATTGACG AGTGGCTTCGACTGAATGTGAAATGCCCTCGGTGCCGCTGCTCAGTATTTCCAAATCTTGATCTCAGTGCTCTGTCCAAT ATCCATTCTGAGCCTCAAGTCTGAACGGTACCCTGTCATTATCGTGACAAGAACCACATAGGATACAAGCCATCCTTCTA GTCAGAGCTAACGTTCAAGTGATTACAGGACTTCTCTGGTCCCTTCAATATGTGTTGAAATTTGAGGGCCAGTTGGTGGT ACAGACAATGCTTAGTAAAATGCTGAAAATGGGGTTGGACCTCTTGTGACTCAAAATATGTCAACTGAAGACCAGAGTGC TTCTGTGGAAAGCATGCCTGTCTTACTTATTTTTGCAATGTTTCTAAACTTCTATTATATTTCTAACCCATTGAGAAGTT GAAAGGGTACATATCCACATCCTGCCATTGCCTCAAGCTTTTAAAATTGGTTTACATTCTGACAAATCCATAAAGAAATG GATCACACCTCGCTTCTTCTTAGTGATGTTGTAGAAATAGGACTTGTAAAGATGAAATACTCTTTTTGCTTAGATAACAT AGGTTAGAGGTGCAATTCTGCAATTGTTTTTGGTGATTTAATAACTAACAGTATGTTGTTTTTAATTGGGGCAATATTGT TTTCTATTTCTTGTAAGCTGGAGTTTGATATGGAAATGAAGTAGATATTTGGTTTTCTCTTTTCATTG
CDS sequence (LotjaGi1g1v0181500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCGTCAGAGGAGTCTATTTCAAATGGTACGATGGCTTTTTCTTGTCCATGCTCGCCATCAGTGTAGCTATTGTGGC TATTAATTGGAAGCGGTACCATTCGTGTGCTCACCCGTTGCACATTTGGATTGTGGTTCACTACACTACTGTTTTTGTTT TCCGGGTTTTGATGTTTGTTGATAATGGCCTTGCTTCGGGAATGGGTTTAGATTTTGGGTGGCAGCAGAGGTATGCTCGA TTTTGTGGAAGAGTAGTTGTGCTTTCAATCCTTTCAATGCTTTTCTACCCATTTCTTTGGGCTTGGACAATAACTGGTAC CCTGTGGTTCAACAATTCTAAAACCTGTTTGCCTGGACTGGGTCAGAAATGGGGCTTCCTCATCTGGTTACTTTTTAGCT ACTGTGGTCTCCTTTGTATTGCTAGCCTGTCAATCAGGAAGTGGTTGACACGGAGACAAGCATATTTGTTAGATGCCCAA CAGGGGATTCCTGTATCCGAATATGGGGTTCTAATTGAAATGATCCGAGTGCCAGATTGGGCATTTGAAGCTGCAGGTCA AGAAACAAGGGGCATGGGCCAAGATGTTACTCCATATCATCCTGGAATTTACCTAACTCCAGCTCAGAGAGAAGCAGTTG AAGCTTTAATTCAGGAACTCCCAAAGTTCAGTTTAAAAGCTGTTCCTACTGATTGCAGTGAATGTCTCGTTTGCTTAGAA GAGTTCCATGAAGGGAATGAGGTCCGTGGCCTGCCGTGTGCTCACAATTTTCATGTAGAATGCATTGACGAGTGGCTTCG ACTGAATGTGAAATGCCCTCGGTGCCGCTGCTCAGTATTTCCAAATCTTGATCTCAGTGCTCTGTCCAATATCCATTCTG AGCCTCAAGTCTGA
Protein sequence (LotjaGi1g1v0181500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAVRGVYFKWYDGFFLSMLAISVAIVAINWKRYHSCAHPLHIWIVVHYTTVFVFRVLMFVDNGLASGMGLDFGWQQRYAR FCGRVVVLSILSMLFYPFLWAWTITGTLWFNNSKTCLPGLGQKWGFLIWLLFSYCGLLCIASLSIRKWLTRRQAYLLDAQ QGIPVSEYGVLIEMIRVPDWAFEAAGQETRGMGQDVTPYHPGIYLTPAQREAVEALIQELPKFSLKAVPTDCSECLVCLE EFHEGNEVRGLPCAHNFHVECIDEWLRLNVKCPRCRCSVFPNLDLSALSNIHSEPQV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 295 | 295 | 1.7E-188 | – | |
| Phobius | 1 | 6 | 6 | - | – | |
| Phobius | 7 | 28 | 22 | - | – | |
| TMHMM | 13 | 30 | 18 | - | – | |
| Phobius | 29 | 39 | 11 | - | – | |
| Phobius | 40 | 60 | 21 | - | – | |
| TMHMM | 40 | 59 | 20 | - | – | |
| Phobius | 61 | 80 | 20 | - | – | |
| Phobius | 81 | 104 | 24 | - | – | |
| TMHMM | 85 | 104 | 20 | - | – | |
| Phobius | 105 | 123 | 19 | - | – | |
| Phobius | 124 | 145 | 22 | - | – | |
| TMHMM | 124 | 146 | 23 | - | – | |
| Phobius | 146 | 297 | 152 | - | – | |
| Gene3D | 204 | 281 | 78 | 3.0E-18 | ||
| SUPERFAMILY | 216 | 284 | 69 | 1.06E-19 | – | |
| Pfam | 234 | 276 | 43 | 1.1E-12 | ||
| SMART | 235 | 275 | 41 | 7.0E-6 | ||
| ProSiteProfiles | 235 | 276 | 42 | 12.77 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0181500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…