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LotjaGi1g1v0183200.1

Overview

Field Value
Gene ID LotjaGi1g1v0183200
Transcript ID LotjaGi1g1v0183200.1
Related isoforms 2
Lotus japonicus genome version Gifu v1.2
Description Rac-like GTP binding protein; TAIR: AT3G48040.1 RHO-related protein from plants 10; Swiss-Prot: sp|Q9SU67|RAC8_ARATH Rac-like GTP-binding protein ARAC8; TrEMBL-Plants: tr|I3T588|I3T588_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0183200
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:35691738..35696564) extracted from Lotus japonicus Gifu genome v1.2.

CAAAAAATCTGCAATGAATAATATGATTAAAATAAAGAAGGAAGAAGAAAAAGTAATTGACTGATACAGCAAGGAGTGAA TGAGTGAGAAGGGAATCATGTGAAGTGCCGCCACTCGCTGCTCTCTCTTTCTATCTCTCTTTGTGTTTGTGTTCTATCAA AATCAAAACAACCTTCTTCTTCAACCTTAAACTTCTAAGGTTTTGGTTTTTTCTCTGTAAATTATTCTGAGAAGAAGCAC CTTCAATCATCAATGGCTTCAACAGCCTCAAGGTTCATCAAGTGTGTCACTGTTGGGGATGGAGCTGTAGGGAAAACTTG CATGCTCATTTGCTACACTAGCAACAAATTCCCCACGGTATGGATTCTTTGTTGCATTTATTTTGTCTTTGAAGTGTTAA ATTTGAAGTCTTTTGGATTTTTGCTATCAATTTGTTTTTATTTCTATTGCTTTTTTGTAATGGGTCTATATGATTATTGA TTATGCATAATTGTATATGGATTCTGAATTCTCAATTTTGTTGGGATCATCTATCTTAATTTGAGTAAAAGCAAGCAACT TGTTTATTTCATGTATGTGTGTTTGTTGGGGTTTGGAGGAAGGAGGGAATTCTGTAACCTAGTAGTTGTTTTCTTATTGG AAGTGTGTGAACTGTGAAGTGCAGAATCAACCCATTTTCCTAGTCTTGGTTTCACAGTTTGTTGTTGCTTCTGTTGAGTT TTTCAATGTTTGCGTTTTGTGCTCTGATTTCACTTTCTCTTTATTTTGGTTGACAGGACTATATCCCCACAGTGTTTGAT AATTTCAGTGCAAATGTGGTCATGGAAGGCATTACTGTCAATTTAGGCCTCTGGGATACAGCTGGTATATTTACTAAGAC TTGTAGTTTGTAGTACCTTTTTTTGAGGTTGAAGAAAAAAGGGGAGATTAGTTCATGAATTTAATTTCTGGTGTCAATTG GCAAAGGTTGTTATTTTCTATTTGTTTTCGATGTCTTTTTCTTAGGGCAAGAGGATTACAACAGGCTGAGGCCTTTGAGC TACAGAGGGGCAGATGTCTTTGTCTTGGCTTTTTCTTTAGTTAGCCGTGCGAGTTATGAGAATGTGTTGAAAAAGGTATG CTGTTAATGCTTGTGTCTCTGAATTAGCACTTTGGCATGTCCTGCAGATTTCTCTTTTGTTGCCTAATTTGTATACACTC TTCAGTGGATCCCTGAGCTCCAGCATTTTGCCCCCGGCGTCCCGGTGGTACTAGTTGGAACCAAACTGGGTAAGTCATCA ATCTCTTGTATTAATACTTGCCCCCGGTGTTATTTTTCCAAATTCTTAAATTTGATAACTCAATTTCTTAATAAAGTCTA GTCCTCATACCAGAACCATTGCAACTGGCCTGTATTCTTATATTAGAATCTTAAACTGGTACTCTGTTATATTGAAACAT ATGCTCATTCTGCATAGATTTATTGATCTCTCACAATCATTCTTTGAAAATATGCGCAAAGCTTTGAACGATCTATACAT ACTTTTCTAAGCTTTAAAAACTCATTAATCTCATAAATTTTGTAAAGGGTTTCATCCATGATACATGGGCGTACAATCTT GGGGCAAGCATATCTCCAAACTTGTCCACACATGTCTATCATAGATTCATAGAGAAGATGTGTTCTGTTATACATCTACT TCTTCACATGGTGGTGAACCATTAAGAAAATTGTATACGGATTTAGATGCAAATTGCTATGCAGAAAAACATTCTACTAC AACAATGTTTATGTACTATTGATGCCTTCTACTTCTATTAGAGTAAACAAAGCTATTCACATGTATCTTGGATATACTTA TCCCATTTTATTAATTGATTGCTTGTAAGATCATTGTTCACACAAAGGAAGTCAAATGAAAAAATAAAGTAGGAAGTTTG GATTATGAGGAGGAAGCCTCATAGAAATATTACAAAATGATTTCACAGATCCTAAATTCCAGTAAGGCATCTCAATGCAT AACATTGACCATCAACTGTAATAGTACCACTCAGTTGAATGGAAGAAATGATACTTTGAGAGTTGAGAGAGAGACAAACT ATGGGAATAATAAGCAACATAGTGACGATTGAATATATCAACACGGATCTGGTTCACCATTTAATTTGTTCTTGATTCAT TTCTTAATTCAAAGAACTTAGTGTTTTGTTAAACAAATTTCTCTAATCTCTTCTGTTCCATATGGAAGACACATGAGCAT CAACAGTTATTTTTTTCTTTTTTTAAGAAAAACACTTCGGGGTTCGATCTTTATTATGGTGGAAATTTGATGTACCTTGC TAGACCTCTTCATGTAATACTGTGTTTATGGTGAGAATGCAGATCTCCGCGAAGACAAGCACTATTTGGCTGATCATCCT GGCCTGGTGCCCGTGACTTCTGAGCAAGTAAATAGCCTCATTTATTACCTGTTTAGAGTTCAACATGCTGTGTTTTCTAA AACTGTTGGCTTTTGCTCATAACTAGGGTGAAGAACTCCGCAAACAAATTGGAGCGACCTATTATATTGAGTGCAGCTCA AAAACTCAGCAGGTATGTTCCCCATTTGATTCTTCAGTTCTTCAATGTTTCAACTTCCAATTCAACCTGTATATGGAAAA ATACCACCAATTGTCATCTAAAGAAACTTTCTACTGCAAAGCATTAAATGTGTTTTATTTGTGACCCCACCCCCCTCGAA ATAAGTTTTTTTTTATACATCGGAAAAGGCGAAATAAGTGGTTGGAAAAGAAACTGAAGATTTGATGATTTTGTGTATAA TGTATATGAAAATTGGGAGAGGGACAAAATTTGCTTAATTTTAAAAGTAGAGGGATTTTAATAGCTCGAAAAAACTAAGG GGACCAAAATCACACATGGTCCAAACTAAGGACTAAGGAGACCAAATTTCTAATTAAGCCTAATATATAATTGTTCCTCT TTTTGCCAAAAACAATATTCTAGTCAGTACAATATTCTTAGGTGACATACAGACAATTGATTCAATTTTAAAGAGAGCCT AGGATGACACTTAACTTGATGATGTTACTTCTTTGGAACGTAATCCAAAGGAAAAAAAAACAACTGAGTTTATCTGTGCT GATGAATGCAATGCTTTTAATATTAAATAAAATATGGTTGGTGCATGGAAGATTTGTAATAATTTATATCAATCATGTAG TATTTCTGACCAAAAGTGGTGATTTCCTTGTGTTGTTACACCACATGATGTTTGCTGTTGCATGATCTATTGATGTTTCT CAGTTTTGGTTTCCAAGACAGTCTGCATTGTTCATGCACATAAATGCTAGATGTTGTTTGATCAGAAATTCGGCCAGAAA TTAATTTTTCTCCAAAACACTTGCAGAATGTCAAAGGAATATTTGATGCTGCCATCAGGATGGTCATCAAGCCTCCACAA AAGCAACAGGAGAAAAGGAAAAAACCACGGCGAGGCTGTTTCCTGTCAGTACACTTTTTCCCTTTATCCCTAACCGTTGG ATTTAAATCCCCGGTCTACTTTGTTGGTCTCCATACCTATCTCACCAATTAAAAATTGACACATCATTTGAAAATGTGTG TTGGTCAAGATAACAAAAGGTGTGGGAAGGTTTAAATGATGTGTCAACTTTTAATTGGTGGGGCAGGGACCGAGACAACA AATAAGGACGGAAGATCTTGATCCCCAACGGCTTTGTAGTTTTTGCTACAATTTTATGTTATAATTTCCATGCACACCCC CATATGTTTCGATGTCAGAAATTTATATTTTTGTTATCAACTTCCCATTGACAGTCTCAGAGTCACTCTCTCTCTCTCTC CCCTGATAACATGATGAGTTATCAAATATTTTATTAGTTCTTGGCTGTACTTGCACAAAAGTTTAATGATAATCAGCCAC AAATAAAATATTTGATAACTAAGTAGGTTCGGATACCAATTCTTTTATAAAAGAATAATGGATATGGTGGCAACTCCCAT TAATTAAATCACTACCTTTGTAAAAGGGATATACTCTATTAAGTGGGAGTTTAGTGTCAGCTGTCTGGCACTTGCAATAA AAAATATCCACATTAGATTGCTAAAATGAAAAGTTGTATACAAGATGGTGTTTTGCTTTCAGTGCTTAGTTACCACGGGA TCCATGATTAGATAGTAGATGCAGATTATGATTAGTTTCTAACAATATATCTATTTTGGTGAAAATGCAGAAATGTCCTC TGTGGAAGGAACATTGTTCGACATAACTGAAGCACTATCTCTATCTCATCCAAAGGTTTTACCTGCTACCGGGGAAGCTG TTACCATCCTGCAGAAATTTTTAATTCTCAACATAAAATCACTTGGCTGGAGTTTGCAGTATAGCTACTACATACATTTG GTTGTTTTTTTATTAGTTTTATGTCTTGAGGGATGGTGAAACATTTACACCTGATGTTTTGTAAAGAAAATGCACTCAAT TTGTTGGCTAGCTATCATTTTGTTTGGAAGTGATCAAGTTACAATGTACATGCAGCATAAATGAGGTTTATGATCCTTGT GAAAAGTTAGCTTATTTTAAGTTCAGGTTTATTTTTAACAATCTTTTCAACTGAATTTTTTGTAGTAAGTTGTTCTCGAG GACGGGCCATATTGTTGAGAATATTTATATGTAATTATCAAGAACATACATCTATATATCATATAGAAGTATTATTGCAC GCCATATGGAAGTATTTTTTTAGATTTTTAAACATATTAATATAATAGTCTAAATGTAGGTTGAAATAGAAATTGATGTT ACTTATTTGAAGATTAAGTGTTTCCAG
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0183200.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCTTCAACAGCCTCAAGGTTCATCAAGTGTGTCACTGTTGGGGATGGAGCTGTAGGGAAAACTTGCATGCTCATTTG CTACACTAGCAACAAATTCCCCACGGACTATATCCCCACAGTGTTTGATAATTTCAGTGCAAATGTGGTCATGGAAGGCA TTACTGTCAATTTAGGCCTCTGGGATACAGCTGGGCAAGAGGATTACAACAGGCTGAGGCCTTTGAGCTACAGAGGGGCA GATGTCTTTGTCTTGGCTTTTTCTTTAGTTAGCCGTGCGAGTTATGAGAATGTGTTGAAAAAGTGGATCCCTGAGCTCCA GCATTTTGCCCCCGGCGTCCCGGTGGTACTAGTTGGAACCAAACTGGATCTCCGCGAAGACAAGCACTATTTGGCTGATC ATCCTGGCCTGGTGCCCGTGACTTCTGAGCAAGGTGAAGAACTCCGCAAACAAATTGGAGCGACCTATTATATTGAGTGC AGCTCAAAAACTCAGCAGAATGTCAAAGGAATATTTGATGCTGCCATCAGGATGGTCATCAAGCCTCCACAAAAGCAACA GGAGAAAAGGAAAAAACCACGGCGAGGCTGTTTCCTAAATGTCCTCTGTGGAAGGAACATTGTTCGACATAACTGA
Download CDS Sequence

Protein sequence (LotjaGi1g1v0183200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MASTASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVMEGITVNLGLWDTAGQEDYNRLRPLSYRGA DVFVLAFSLVSRASYENVLKKWIPELQHFAPGVPVVLVGTKLDLREDKHYLADHPGLVPVTSEQGEELRKQIGATYYIEC SSKTQQNVKGIFDAAIRMVIKPPQKQQEKRKKPRRGCFLNVLCGRNIVRHN
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR24072
2 204 203 2.1E-138 –
ProSiteProfiles
PS51420
2 179 178 24.713
IPR003578
PANTHER
PTHR24072:SF307
2 204 203 2.1E-138 –
Gene3D
G3DSA:3.40.50.300
5 185 181 8.2E-64 –
SMART
SM00173
6 182 177 7.8E-19 –
CDD
cd04133
8 180 173 1.67867E-132 –
SUPERFAMILY
SSF52540
8 179 172 1.65E-54
IPR027417
PRINTS
PR00449
9 30 22 1.7E-35 –
TIGRFAM
TIGR00231
9 173 165 9.4E-33
IPR005225
SMART
SM00175
9 182 174 7.4E-26 –
Pfam
PF00071
10 180 171 2.5E-50
IPR001806
SMART
SM00174
11 182 172 5.2E-113 –
PRINTS
PR00449
32 48 17 1.7E-35 –
PRINTS
PR00449
49 71 23 1.7E-35 –
PRINTS
PR00449
111 124 14 1.7E-35 –
PRINTS
PR00449
157 179 23 1.7E-35 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003924
Molecular function GTPase activity Catalysis of the reaction: GTP + H2O = GDP + phosphate.
Subterm of
GO:0005525
Molecular function GTP binding Interacting selectively and non-covalently with GTP, guanosine triphosphate.
Subterm of
GO:0007264
Biological process Small GTPase mediated signal transduction Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0183200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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