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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0183200 |
| Transcript ID | LotjaGi1g1v0183200.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Rac-like GTP-binding protein; TAIR: AT5G62880.2 RAC-like 10; Swiss-Prot: sp|O82481|RAC10_ARATH Rac-like GTP-binding protein ARAC10; TrEMBL-Plants: tr|I3T588|I3T588_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0183200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:35691990..35694587) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCTTCAACAGCCTCAAGGTTCATCAAGTGTGTCACTGTTGGGGATGGAGCTGTAGGGAAAACTTGCATGCTCATTTG CTACACTAGCAACAAATTCCCCACGGTATGGATTCTTTGTTGCATTTATTTTGTCTTTGAAGTGTTAAATTTGAAGTCTT TTGGATTTTTGCTATCAATTTGTTTTTATTTCTATTGCTTTTTTGTAATGGGTCTATATGATTATTGATTATGCATAATT GTATATGGATTCTGAATTCTCAATTTTGTTGGGATCATCTATCTTAATTTGAGTAAAAGCAAGCAACTTGTTTATTTCAT GTATGTGTGTTTGTTGGGGTTTGGAGGAAGGAGGGAATTCTGTAACCTAGTAGTTGTTTTCTTATTGGAAGTGTGTGAAC TGTGAAGTGCAGAATCAACCCATTTTCCTAGTCTTGGTTTCACAGTTTGTTGTTGCTTCTGTTGAGTTTTTCAATGTTTG CGTTTTGTGCTCTGATTTCACTTTCTCTTTATTTTGGTTGACAGGACTATATCCCCACAGTGTTTGATAATTTCAGTGCA AATGTGGTCATGGAAGGCATTACTGTCAATTTAGGCCTCTGGGATACAGCTGGTATATTTACTAAGACTTGTAGTTTGTA GTACCTTTTTTTGAGGTTGAAGAAAAAAGGGGAGATTAGTTCATGAATTTAATTTCTGGTGTCAATTGGCAAAGGTTGTT ATTTTCTATTTGTTTTCGATGTCTTTTTCTTAGGGCAAGAGGATTACAACAGGCTGAGGCCTTTGAGCTACAGAGGGGCA GATGTCTTTGTCTTGGCTTTTTCTTTAGTTAGCCGTGCGAGTTATGAGAATGTGTTGAAAAAGGTATGCTGTTAATGCTT GTGTCTCTGAATTAGCACTTTGGCATGTCCTGCAGATTTCTCTTTTGTTGCCTAATTTGTATACACTCTTCAGTGGATCC CTGAGCTCCAGCATTTTGCCCCCGGCGTCCCGGTGGTACTAGTTGGAACCAAACTGGGTAAGTCATCAATCTCTTGTATT AATACTTGCCCCCGGTGTTATTTTTCCAAATTCTTAAATTTGATAACTCAATTTCTTAATAAAGTCTAGTCCTCATACCA GAACCATTGCAACTGGCCTGTATTCTTATATTAGAATCTTAAACTGGTACTCTGTTATATTGAAACATATGCTCATTCTG CATAGATTTATTGATCTCTCACAATCATTCTTTGAAAATATGCGCAAAGCTTTGAACGATCTATACATACTTTTCTAAGC TTTAAAAACTCATTAATCTCATAAATTTTGTAAAGGGTTTCATCCATGATACATGGGCGTACAATCTTGGGGCAAGCATA TCTCCAAACTTGTCCACACATGTCTATCATAGATTCATAGAGAAGATGTGTTCTGTTATACATCTACTTCTTCACATGGT GGTGAACCATTAAGAAAATTGTATACGGATTTAGATGCAAATTGCTATGCAGAAAAACATTCTACTACAACAATGTTTAT GTACTATTGATGCCTTCTACTTCTATTAGAGTAAACAAAGCTATTCACATGTATCTTGGATATACTTATCCCATTTTATT AATTGATTGCTTGTAAGATCATTGTTCACACAAAGGAAGTCAAATGAAAAAATAAAGTAGGAAGTTTGGATTATGAGGAG GAAGCCTCATAGAAATATTACAAAATGATTTCACAGATCCTAAATTCCAGTAAGGCATCTCAATGCATAACATTGACCAT CAACTGTAATAGTACCACTCAGTTGAATGGAAGAAATGATACTTTGAGAGTTGAGAGAGAGACAAACTATGGGAATAATA AGCAACATAGTGACGATTGAATATATCAACACGGATCTGGTTCACCATTTAATTTGTTCTTGATTCATTTCTTAATTCAA AGAACTTAGTGTTTTGTTAAACAAATTTCTCTAATCTCTTCTGTTCCATATGGAAGACACATGAGCATCAACAGTTATTT TTTTCTTTTTTTAAGAAAAACACTTCGGGGTTCGATCTTTATTATGGTGGAAATTTGATGTACCTTGCTAGACCTCTTCA TGTAATACTGTGTTTATGGTGAGAATGCAGATCTCCGCGAAGACAAGCACTATTTGGCTGATCATCCTGGCCTGGTGCCC GTGACTTCTGAGCAAGTAAATAGCCTCATTTATTACCTGTTTAGAGTTCAACATGCTGTGTTTTCTAAAACTGTTGGCTT TTGCTCATAACTAGGGTGAAGAACTCCGCAAACAAATTGGAGCGACCTATTATATTGAGTGCAGCTCAAAAACTCAGCAG GTATGTTCCCCATTTGATTCTTCAGTTCTTCAATGTTTCAACTTCCAATTCAACCTGTATATGGAAAAATACCACCAATT GTCATCTAAAGAAACTTTCTACTGCAAAGCATTAAATGTGTTTTATTTGTGACCCCACCCCCCTCGAAATAAGTTTTTTT TTATACATCGGAAAAGGCGAAATAAGTGGTTGGAAAAGAAACTGAAGATTTGATGATTTTGTGTATAATGTATATGAAAA TTGGGAGAGGGACAAAATTTGCTTAATTTTAAAAGTAG
CDS sequence (LotjaGi1g1v0183200.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTTCAACAGCCTCAAGGTTCATCAAGTGTGTCACTGTTGGGGATGGAGCTGTAGGGAAAACTTGCATGCTCATTTG CTACACTAGCAACAAATTCCCCACGGACTATATCCCCACAGTGTTTGATAATTTCAGTGCAAATGTGGTCATGGAAGGCA TTACTGTCAATTTAGGCCTCTGGGATACAGCTGGGCAAGAGGATTACAACAGGCTGAGGCCTTTGAGCTACAGAGGGGCA GATGTCTTTGTCTTGGCTTTTTCTTTAGTTAGCCGTGCGAGTTATGAGAATGTGTTGAAAAAGTGGATCCCTGAGCTCCA GCATTTTGCCCCCGGCGTCCCGGTGGTACTAGTTGGAACCAAACTGGATCTCCGCGAAGACAAGCACTATTTGGCTGATC ATCCTGGCCTGGTGCCCGTGACTTCTGAGCAAGGTGAAGAACTCCGCAAACAAATTGGAGCGACCTATTATATTGAGTGC AGCTCAAAAACTCAGCAGACTGAAGATTTGATGATTTTGTGTATAATGTATATGAAAATTGGGAGAGGGACAAAATTTGC TTAA
Protein sequence (LotjaGi1g1v0183200.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASTASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVMEGITVNLGLWDTAGQEDYNRLRPLSYRGA DVFVLAFSLVSRASYENVLKKWIPELQHFAPGVPVVLVGTKLDLREDKHYLADHPGLVPVTSEQGEELRKQIGATYYIEC SSKTQQTEDLMILCIMYMKIGRGTKFA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 2 | 168 | 167 | 4.6E-115 | – | |
| PANTHER | 2 | 168 | 167 | 4.6E-115 | – | |
| ProSiteProfiles | 2 | 187 | 186 | 22.748 | ||
| Gene3D | 5 | 176 | 172 | 4.7E-58 | – | |
| SMART | 6 | 177 | 172 | 8.9E-12 | – | |
| SUPERFAMILY | 8 | 172 | 165 | 6.35E-51 | ||
| CDD | 8 | 167 | 160 | 2.24672E-125 | – | |
| TIGRFAM | 9 | 130 | 122 | 2.7E-31 | ||
| SMART | 9 | 179 | 171 | 3.8E-19 | – | |
| PRINTS | 9 | 30 | 22 | 5.7E-29 | – | |
| Pfam | 10 | 168 | 159 | 9.2E-47 | ||
| SMART | 11 | 178 | 168 | 2.0E-97 | – | |
| PRINTS | 32 | 48 | 17 | 5.7E-29 | – | |
| PRINTS | 49 | 71 | 23 | 5.7E-29 | – | |
| PRINTS | 111 | 124 | 14 | 5.7E-29 | – | |
| PRINTS | 157 | 179 | 23 | 5.7E-29 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | GTPase activity | Catalysis of the reaction: GTP + H2O = GDP + phosphate. | ||
| Molecular function | GTP binding | Interacting selectively and non-covalently with GTP, guanosine triphosphate. | ||
| Biological process | Small GTPase mediated signal transduction | Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals. |
Expression pattern of LotjaGi1g1v0183200.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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