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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0184200 |
| Transcript ID | LotjaGi1g1v0184200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | E2F transcription factor; TAIR: AT3G48160.2 DP-E2F-like 1; Swiss-Prot: sp|Q8LSZ4|E2FE_ARATH E2F transcription factor-like E2FE; TrEMBL-Plants: tr|A0A0S3RGB4|A0A0S3RGB4_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0184200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:36043233..36047921) extracted from Lotus japonicus Gifu genome v1.2.
GTCATCGAATCGAATTCCCGCTCATCAGAAGTTGAAAAACCAAACAAATCCCTCCCAACCAAGCTTCGAAAAATTCACAT TCACCAATCACCATTCACCGCTCCCTCCACTTTTTCTTTTCAACTCAAATCAAATAGTAACAATTTGGGTTTCCCCACTC TCTCTCTGTTGTTTGGTTCCTCACTCACTCACTCACTCCATCCACAACCCCAACCTAACCTAACTCATCAACCCATGTCT TCTTCCACAACCTCTTCCAGACACCACACCTACAATCGAAAGCAAAAATCTCTCGGTCTCTTATGCACCAAGTACTGTTA ATCATTCTTATCCATTTCTTCTCTTTTCATCCAATTTTTTCTTAACTTCACATCTAATTCCGATCCATTCTTCTGCAGTT TCTTGAGCTTGTACAACAAAGAAGGTATCCACCTAATTGGCCTCGACGATGCCTGCTCACGATTAGGGGTCGAGAGGCGT CGGATCTATGATATCGTCAACGTCTTGGAGAGTGTTGGGGTCAGTTTTTTAGTTTTCTTCCCTTTCACATCAAATTAAAC TCACCTCTTTACTTCAACTTTCTTATTAATGATTTAAGTTTTTTTTTTTTTCAGATGCTTGCGAGAAAAGCTAAGAATCA ATATACCTGGAAAGGCTTCGCTGTGATTCCAGAGGCGTTGCGCGAACTTAAGGTCATTATAATTTTTTAATTTTTTAGAA TCAATGTGTTAAATTAAATTAAATGATGTGCGCGATTTCTGATTTTCGCATTCATTGATTTGAGGTTTTTTTGTTTTATT TTGTAGGATGAGGGTTTGAAGGAGAATCTATTTGATGCTGCTAATGACAGTGCCAAAGTCAGTAGGAAAATTTGTCTACA TTTTCTGTTCTGTTTAATGCCTTTTTTTTGAATAATAAATTATGTAGATTTAGGATTCTGACAATTAATAATTAATTTAT GATTTATTTAATTAAATTGTAGTTTAATGCATTATTTAGGTGTCTGATGATGAGTATGATGAAGAAGCTAATCCAGCTAC TGGAAGTCAAAATGACAAGTCCAACTCTGATTCTGCCACTCTTGTCAAGTCTTCACAAAATGGTATTTGGAAATATTTGT CTTTCTAGTAGTTGTTTTCTTTGTTGATGTTTAGTTCATGTTTGGAGATTGAGCAATATCGCGGCGGACTTTTTAGCGAA ATATGCTCTTTCTGATTTTTGTTCTGTGTGGATTGAGGATTTTCCTCTTGGTCTGGCGCGTATTCTCTTGTTGGACGTTG CTTATGTTGATTAATGAAATTGCATTTTGACGTAAAAAAAAAATTCTGGGATTTGGAAGTTGTTAATTACCATCTTGAGT TCTTAAATGTCTGTATGTATGCATTTGTATGTGTGTATCTTGGCTTATAAAAAAAGTGTGTTTCTTTTCCATCTTCTTCT TCTTTTTATTTATTTATTGATAAAACAGTATATTTTGTTACTTTTATGCAATAGTAATTTTGCTTCTAATTTTACATTTT AATTAAAAAGCAAGCAAACACATTGTACCCAAAAAAAAAGCAAACATGTAACTTTTTCAAAATTTTGTAAATTAATTTCA GTACAAACTTTTAAAATAAAAGTTTTCAAAATGTGTTCAAATTTAAAAAACAAGCAAATGTAAAGTTGTATAAAAATATT TCATTTTTTAATGATTTTATAAAATAAAAGTTTTCTTAAGATTAATTAGAATTGTTTTGAAATAGACACTCTTAAGACTT TTAATAGAAAAGTTTCTTTAAAAAAGAGTTTTTTTCATTGAAACAACTGTATCAATCATGTTAGGATTAATTTTCAATTA AAATCAGTTTTATAAAAACAATTCATTATATCATGCCATGGTTGCCATTTATAGAATGGACTTGAAACGGGTATGGATTG AGGATAAGTATGATTTCTTTGAAATGAAAAACAAAAACAAGTTCAGTTTTTACAAATAGGGTACTGATATGCTGAGGATT GACACTTGACACTGGTTTGTTAATGCTTTGCAGAAAACAGAAAGGAAAAGTCTCTAACACTGCTTACTCAGAATTTTGTC AAGCTCTTTGTCTGCTCTAATGTGAGTGTTTTCTATTTACCATCTTAGACATTCCAAATTTGGGGCATCATTTTCATTAG CTATTAAACTTTCTATCATGTTGATAATTTTAAACCTTCCCTCTTCAGATTCAAATGGTCTCCCTTGACGATGCTGCAAA GTTGTTGCTTGGAAATGTTGATACTGCTATGATGAGAAGTGAGTAGTTTGTTCAGCAATTTAAGCTTAATTCGTTATTTC ATTATTCATTGACTGATGAAGAAGCTTAGAACTTTTTCAGTTATAATATATTCTTGACCTTTTGGCCTTTCAGCAAAAGT CAGACGCCTGTATGATATTGCAAATGTGCTATCCTCTATCAACCTAATTGAAAAGGTGCATATATTCCTCTCTTTAAAAT CTCACTTGGTATATTTTTGAAAACTACTAGTAGATTTTCACATTTGAGGCAGAAGTGATTGGGAGAAGCTACTAGTAGCT TTTGCAGGTAAACAATTGATTTTAGAAAGTTTAAATATGAAATATAACATGAAAGAGTTTTGATATTGTTCTCTCCAAAT GGCAAGGAGTTAGACTTAGTGACAAGCACACAATCCAGCTCCTAGGAATAGTGTTAGAGTGAAGATGCTAGATACATGAC TTTTGTGGTTCCTTATAACTTCAGTGTTGTCTCTTGAATTACTGGGCGTCTCGTATTCATTATGTGGTTATTAGATCTTT GAATGATGTCATGATTGGCTAATTAATTCGGGAGTTATGAACGGCTAAGGAGGGTTATGAACAGTTAGGAAACCTATGGT CCTGGTGTCCATGTGAAGTTGGTAATTTCAACCATAAACAGTCTCTCCTTCATACTGGGCTATTGGGTGAATTTGGATTG CGGATAGATTTTTATTGTTTTACAATAGGAGGAACTCTATTAACTCTTCAAATTCAGCTTTACAACTTTCTACATTTATA CACTCTTGACTCTTCAAATTCAGTTTTACAACTTTCTACATTTACATTCTTACACAATGACTTTACCTCTGATGTAGACC CATATGGCAGAATCAAGAAAACCAGCATTCAGGTGGCTGGGTTTGAAAGGGAAAACAATGAGTGAGTCAGGGAACTCAGC CCAAGATCCAAATACCAACGAGTCGAGGAAAAGGCTGTTTGGAAGTGACATCACGAACATAAGCTTTAAGAGGAACAAAG TTGATCTGTTCATGAATGAGGGGGACTTTTACAAGAACTCTAACATGGAAAACAAACATGACAATCTCAATTGCCAAGGC CAATCAGAGAAAAGCAACTCAAAACAAGATGCAAAACAGACTACAGGGTGCTATCAGTTTGGCCCTTTCGCTCCGCGTAA AGTTGGGGCCTCTGAGAATGATAATGTGAAGCAGGTACATGATTGGGAGAGTCTTGCAAAGGCTCATCGTCCTCAGTATG AAAACCTAGGTAACATTTCACTCATCTATGGAATCTGATATGTTATTTTGTATCTTGTATCATTTCAATCAGATTTAATG AGTGATCCACATTGCACCATTTTGCTTTTTCGTTGAAAGTATTGTGTTTGGCTATTTTATTTGGGAGTTTAGAGTCATAT TTCTATTATTTTGCTTTTGTTTTCTTGTAGGGTTTTGAAGTTAAATTTTCTTTTCCAAAGCAGTTTATCTGCTCCCACCA AGAAAATAAGGTCATATTTTTCGTGCAGTACTTTTAAAATCACTTTTTGTTGTTTTGATACACTTTGATTAATCTATTTT TAGAAAAGTTGGTATATTTAGGGAGTGATTAGTTTATGAAGTATTGGTTTTCTAAAAGTGAATCCATAAGCTAGCAGTGT GTTGAAGAGGGTGAGAAAAATGTATTACCAGTATTCCACTTTGTAATATGTTGCAATTCTTATTGGTGGTGATGATGATG AAGTAAATGCATGTTTTTTGTCTAGGAATATGAATTATAAAACAAATCAATATTTTAGTTATCTTCAAAACTGATTTTCA GAACATACTTAATATTACAAGGAAAGTAAGTATCTATAGAAGTTATTTGTGTAATTTTTAATGAGTGGATTGAGTAGTAT TGCTGAAAGTTCAACTTAACTTATGTTTGAGTTGCTTGTGATGCAGCTTTGAGAGACCTCTTCTCGCACTACACGGAAGC GTGGAAATCTTGGTACTCTGAGGTAGCTGGGAAGAGACCATAGAACATTTTGTAATTCATCTGTCCATAGTCAAATAACA GAGTAGCTTTCTCAATAGATGAACCATTGTTGGATGCATGTTCTCCCTTGTCTAGGGGCTCATGGCTCCCCAATCTTTTT GGAAAAATCTTTTATAGATTTCAATTATACATGTTTTGCTATTTTATAAGTCAAATATATATTCTAATATAAGCAGTGCT TAAACCCTATACAAAAGGGCTCTATAATAGTAAGTGAATTTAGCATGCACAACATGAGCCAATAACCACCCAAATCCCTT GCACTACCAATCTACCATTAGTTTTTCTATCAATACTGGATTAAATTCTACTAAACTATAAGATAACGGCCAGCCAAGAG CAACTCCATCTCTAGTTCTTAGATGTGAGTTCTTAGGCTAAGAATTAAG
CDS sequence (LotjaGi1g1v0184200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTTCTTCCACAACCTCTTCCAGACACCACACCTACAATCGAAAGCAAAAATCTCTCGGTCTCTTATGCACCAATTT CTTGAGCTTGTACAACAAAGAAGGTATCCACCTAATTGGCCTCGACGATGCCTGCTCACGATTAGGGGTCGAGAGGCGTC GGATCTATGATATCGTCAACGTCTTGGAGAGTGTTGGGATGCTTGCGAGAAAAGCTAAGAATCAATATACCTGGAAAGGC TTCGCTGTGATTCCAGAGGCGTTGCGCGAACTTAAGGATGAGGGTTTGAAGGAGAATCTATTTGATGCTGCTAATGACAG TGCCAAAGTGTCTGATGATGAGTATGATGAAGAAGCTAATCCAGCTACTGGAAGTCAAAATGACAAGTCCAACTCTGATT CTGCCACTCTTGTCAAGTCTTCACAAAATGAAAACAGAAAGGAAAAGTCTCTAACACTGCTTACTCAGAATTTTGTCAAG CTCTTTGTCTGCTCTAATATTCAAATGGTCTCCCTTGACGATGCTGCAAAGTTGTTGCTTGGAAATGTTGATACTGCTAT GATGAGAACAAAAGTCAGACGCCTGTATGATATTGCAAATGTGCTATCCTCTATCAACCTAATTGAAAAGACCCATATGG CAGAATCAAGAAAACCAGCATTCAGGTGGCTGGGTTTGAAAGGGAAAACAATGAGTGAGTCAGGGAACTCAGCCCAAGAT CCAAATACCAACGAGTCGAGGAAAAGGCTGTTTGGAAGTGACATCACGAACATAAGCTTTAAGAGGAACAAAGTTGATCT GTTCATGAATGAGGGGGACTTTTACAAGAACTCTAACATGGAAAACAAACATGACAATCTCAATTGCCAAGGCCAATCAG AGAAAAGCAACTCAAAACAAGATGCAAAACAGACTACAGGGTGCTATCAGTTTGGCCCTTTCGCTCCGCGTAAAGTTGGG GCCTCTGAGAATGATAATGTGAAGCAGGTACATGATTGGGAGAGTCTTGCAAAGGCTCATCGTCCTCAGTATGAAAACCT AGCTTTGAGAGACCTCTTCTCGCACTACACGGAAGCGTGGAAATCTTGGTACTCTGAGGTAGCTGGGAAGAGACCATAG
Protein sequence (LotjaGi1g1v0184200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSSSTTSSRHHTYNRKQKSLGLLCTNFLSLYNKEGIHLIGLDDACSRLGVERRRIYDIVNVLESVGMLARKAKNQYTWKG FAVIPEALRELKDEGLKENLFDAANDSAKVSDDEYDEEANPATGSQNDKSNSDSATLVKSSQNENRKEKSLTLLTQNFVK LFVCSNIQMVSLDDAAKLLLGNVDTAMMRTKVRRLYDIANVLSSINLIEKTHMAESRKPAFRWLGLKGKTMSESGNSAQD PNTNESRKRLFGSDITNISFKRNKVDLFMNEGDFYKNSNMENKHDNLNCQGQSEKSNSKQDAKQTTGCYQFGPFAPRKVG ASENDNVKQVHDWESLAKAHRPQYENLALRDLFSHYTEAWKSWYSEVAGKRP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 2 | 368 | 367 | 1.8E-125 | – | |
| PANTHER | 2 | 368 | 367 | 1.8E-125 | ||
| Gene3D | 9 | 83 | 75 | 5.9E-26 | ||
| SUPERFAMILY | 14 | 78 | 65 | 1.52E-15 | ||
| SMART | 15 | 80 | 66 | 1.5E-26 | ||
| Pfam | 16 | 80 | 65 | 2.3E-19 | ||
| MobiDBLite | 109 | 143 | 35 | - | – | |
| MobiDBLite | 120 | 143 | 24 | - | – | |
| Gene3D | 140 | 228 | 89 | 5.6E-24 | ||
| SMART | 146 | 225 | 80 | 2.0E-29 | ||
| Pfam | 147 | 225 | 79 | 8.7E-20 | ||
| SUPERFAMILY | 148 | 226 | 79 | 2.54E-12 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
| Cellular component | Transcription factor complex | A protein complex that is capable of associating with DNA by direct binding, or via other DNA-binding proteins or complexes, and regulating transcription. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi1g1v0184200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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