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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0185900 |
| Transcript ID | LotjaGi1g1v0185900.3 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Polynucleotide 5'-hydroxyl-kinase NOL9; TAIR: AT5G11010.2 Pre-mRNA cleavage complex II protein family; Swiss-Prot: sp|Q8VYP6|NOL9_ARATH Polynucleotide 5'-hydroxyl-kinase NOL9; TrEMBL-Plants: tr|I1K1J8|I1K1J8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0185900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:36394531..36397919) extracted from Lotus japonicus Gifu genome v1.2.
ATGGGTTCCTCCCCTTCACCAGACATATACATCCCAGAGCAGTGGTCAGAGGCTGCAGGGTCCATTGCAGACAGTTCAAC GCCTCCTATTACTCTCATATGTGGGGCCAAGAACTGTGGGAAGACAATCTTCTCCCGCTATCTCCTAAACGTCCTCTTGC ACAGATATAGCAGAGTCGCTTATCTGGATACTGATGTAGGCCAACCTGAGTTCACTGCTCCTGCTTTTCTATCACTTACC ATTGTCCACCAAGAAACTCCTGGTAGGTTAAAGAATCCCTATGATAATTTTTACATCAAACAAGAAGATTTATAAATTAT AATCTTTTAAAAGTTATTTACACTGGATATTGAGTCGGACAATGACAATTCTTTTTTTTACTATTTTAGATATAACCATT CCGTGCCTGAAAACACCAGAGAGGTATTAAGTTTTATCCCATCTCAATCATTTGGGGACTGAATCTGTCTTTTTAGGACT TTGTATTGTTGCTTTGAATTTAAAATATATAACGAAGCTCCTACCAAGCATCAATTCATTGTTCAGATGTAGTGGACCAT GTAAAGTTTAGCAACTTTTGTATTCTTCATCTGTTAGATTAAGATTATTATGTATTGCTACTAGGGAGGTTTATTATATG TTTTCCAGATTAAGTAGAACTCTAATAAGTGCAGAGGTCCTAGGCACTCTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTC TTTCTTTCTTTCTTTCTTTCTTTCTTCTTATGGTTGGCTCCATTTTATTTTTAATACATTGTACTGTGGATTATATTAAT GATCTGTTTGTCGGATCTATAATTCTAAGTATTGAATTATATGTGTCATCCAATCCATGTGTATTTGAATGATCAATTGA ACATGTGGGCTTGCTTGACTCACTATCTGTTATTTTAATGTAATCTGTTACAGGTGCCTTTTCTTTGGTGATGTTTCTTC AAAGAGAGATCCAACGTCATACTTAAATTATGTATTTGCGATATATGATTATTATCGAAAGGAGTATTGCTCCCTTGATA AGGAAGAAAATTCTCCTATGATTGACTTGCCTCTTATTGTGAATACTCCTGGATGGGTGAAAGGTAATATCATTTCTTTT TCAGTTATTAATCTGATTCTTTTTAACCCTGCAATTGTTTTTTTTACTGCACATAAACTAATGCTGTCTTAGAACAATAA TAACAATATATCATCTATCATGGTACTAATTCAGTGGATTCTTTTCTGTTGCATTTCAGGTGTTGGTTATTCTGTATTAG TGGACATGTTGAAATATATTTGTCCAACACATGTGGTTAAGATAAGCATCTCCAGTGAAAATAAGAATTTACCTGCTGGA CAGTTCTGGTTAGATGGGGAACATAATGGAACAATCAACTTAATTGAGATAAATTCAGCTCGTCAGGACTCACTAAATAG ATCGTAAGCAATCTGATCAGAAAGTTATCAACTGCAGCTGTTAGTTTGGTCCCTTTATTATTTACTTTTTCTGCATCAAG TATTATAGAATATCCCTATTTGTTTCCCCAGGGTGCTTGTTCAGAAGGATGCACGTCTCCTGCGTGATTTACGAATAATG GCATATTTCAGACAGTGCTTTCCCAGTGATTCAGATATTTCTACAATCAAGGAACTTGCACATTCGTTGGCCTCCCACTG TCCTTATGAAGTTCCCATTGCAAGCATAAAGATTCAACATCTTCATCGTGAGGTTGTTTTAAATTTTGCTTATTATCTTT TCTGAGTCTATAGTGAGCCCTTAGTATAACTGTAAGTTTGCTGCCTTGTGACCTGATGGCCACAGGTAGTAGTTGCAGAA ACTTCCTCTTTACTATGAAGATAAAGTAATGTGCATCTAACCCTTCCTAAGCTCAACAATGGTTGAGTCTGGTGATATAG CTGCCTTTTAAGTTTGGGTTTTGTTGCATTTGATATTCTAAGCCGACTTTGAATTTTAAATCTTTTTAATATAGAGTAAT AGAGATAAACATATTATGTTTCCTTGTTAGGAATTTCAACAATACTTCTTACATCTAATTTTTTTCTTTTAAAGGTGAGC TGAACATTCTCTTATGGTTTGTCTGTATTTTTGTAGGTCCCAAGCTCTGAGATGTTCTACAGTTTGAATGCTAGCATTGT TGGTTTAGCAGTTGATTCTGAAGGACCTGAAAATTTACCTTGGTGTCTTGGTCTTGGTAGGTAATTTGATTGCCTTTCAA ATTCTAAAATATCTCATTATGTCTGGCTGGGAAATAAATGTTAGTTTACTGATATGCTATTGCAAAGTTGAAATTTTAGA TTTAAAAATGAAATTAGATTGCCGTCGTAGTATTGCAAACTAGCTGAAAGCCCCCTATTATGTAGTTTTAATCTCTGGAA GGCTTCATAAACAAAAGGAACATTCTAATCTTGATTAAAAGATAAATTAAAAATTTGAGCTTGATATCAGTTTCAAACTT CGGGTAGCTGTGAGGTGCAGAAAAGTACGGTGAAAGGAATCTATGTTCATTGTTTGGCTTCATTAGATCTTGGCCCCGTT TGGAAAAACAGCTTAATTAAGCGCTTATGGTCATAAGCGCTTATGACATAAGCGCTTATTCATAAGCTATTTTTAAAATT TTATTGAAATAAATTAAAAATAAGCTGTATATAAGCATAAGCTGTTTTTCATAAGCTGTCCTGAGTAGCTTATGAAAATA AGCTGAAAATAGCTTATGGCAGGCCATAAGATGTTTGCATAAGCTCTCCCAAACACTGGCATAAGAGCTTATGCTGTCAG ATAAGCTTAAATAAGCTCTTCCAAACTGGGCCCTTGTATATCTGTTGGTTGTAAAGTTAATCAGCATCGATTAATCTTGC AATAACATCTCAAGGAAAGTAGGAAACTATATCTTAAGGGATCTCAACCCTTTTTTAAGCTATCTTGTCCTCTGTAGTCT GTAGTAGTTTCTGTTATTGATGAGCACACAATTAATACAACAGTTAGTCTTTTACTTGTTATGCATTTGGATAATTCTAT GCATCTTTACTGTTAAAAACATCTTGATTTGTTATGATTCAGGGATTGTGAGGGGTATTGACACAATCAAAGGTGTGCTC TATGTGATTACACCTGTGCCACATAGTTCTCTGGATAAAGTCAACCTCTTGCTACAAGGTTATATCCAAATTCCCATTTG TTTATTGCAGGTAAGAGATAGTTTTATATCCTTTTCCTTCTTAACAGTCTTATAGAACAAGATAATTTCTCAAATTTTAT TGTTTTTATTTTGAAATAGCGAACATTTTCATGAGAAAGAATGTCTTCTTTTCAGGTCCAGGGATGCATATCGCCTTACA TGTCAGCAGATGTATTGACTACAAGTTAG
CDS sequence (LotjaGi1g1v0185900.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTTCCTCCCCTTCACCAGACATATACATCCCAGAGCAGTGGTCAGAGGCTGCAGGGTCCATTGCAGACAGTTCAAC GCCTCCTATTACTCTCATATGTGGGGCCAAGAACTGTGGGAAGACAATCTTCTCCCGCTATCTCCTAAACGTCCTCTTGC ACAGATATAGCAGAGTCGCTTATCTGGATACTGATGTAGGCCAACCTGAGTTCACTGCTCCTGCTTTTCTATCACTTACC ATTGTCCACCAAGAAACTCCTGATATAACCATTCCGTGCCTGAAAACACCAGAGAGGTGCCTTTTCTTTGGTGATGTTTC TTCAAAGAGAGATCCAACGTCATACTTAAATTATGTATTTGCGATATATGATTATTATCGAAAGGAGTATTGCTCCCTTG ATAAGGAAGAAAATTCTCCTATGATTGACTTGCCTCTTATTGTGAATACTCCTGGATGGGTGAAAGGTGTTGGTTATTCT GTATTAGTGGACATGTTGAAATATATTTGTCCAACACATGTGGTTAAGATAAGCATCTCCAGTGAAAATAAGAATTTACC TGCTGGACAGTTCTGGTTAGATGGGGAACATAATGGAACAATCAACTTAATTGAGATAAATTCAGCTCGTCAGGACTCAC TAAATAGATCGGTGCTTGTTCAGAAGGATGCACGTCTCCTGCGTGATTTACGAATAATGGCATATTTCAGACAGTGCTTT CCCAGTGATTCAGATATTTCTACAATCAAGGAACTTGCACATTCGTTGGCCTCCCACTGTCCTTATGAAGTTCCCATTGC AAGCATAAAGATTCAACATCTTCATCGTGAGGTCCCAAGCTCTGAGATGTTCTACAGTTTGAATGCTAGCATTGTTGGTT TAGCAGTTGATTCTGAAGGACCTGAAAATTTACCTTGGTGTCTTGGTCTTGGGATTGTGAGGGGTATTGACACAATCAAA GGTGTGCTCTATGTGATTACACCTGTGCCACATAGTTCTCTGGATAAAGTCAACCTCTTGCTACAAGGTTATATCCAAAT TCCCATTTGTTTATTGCAGGTCCAGGGATGCATATCGCCTTACATGTCAGCAGATGTATTGACTACAAGTTAG
Protein sequence (LotjaGi1g1v0185900.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGSSPSPDIYIPEQWSEAAGSIADSSTPPITLICGAKNCGKTIFSRYLLNVLLHRYSRVAYLDTDVGQPEFTAPAFLSLT IVHQETPDITIPCLKTPERCLFFGDVSSKRDPTSYLNYVFAIYDYYRKEYCSLDKEENSPMIDLPLIVNTPGWVKGVGYS VLVDMLKYICPTHVVKISISSENKNLPAGQFWLDGEHNGTINLIEINSARQDSLNRSVLVQKDARLLRDLRIMAYFRQCF PSDSDISTIKELAHSLASHCPYEVPIASIKIQHLHREVPSSEMFYSLNASIVGLAVDSEGPENLPWCLGLGIVRGIDTIK GVLYVITPVPHSSLDKVNLLLQGYIQIPICLLQVQGCISPYMSADVLTTS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 6 | 356 | 351 | 6.1E-131 | – | |
| PANTHER | 6 | 356 | 351 | 6.1E-131 | – | |
| Gene3D | 11 | 239 | 229 | 1.5E-31 | – | |
| SUPERFAMILY | 28 | 166 | 139 | 3.19E-6 | ||
| Pfam | 35 | 237 | 203 | 9.0E-33 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0185900.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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