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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0187400 |
| Transcript ID | LotjaGi1g1v0187400.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Nodulin / Major Facilitator Superfamily protein; TAIR: AT1G74780.1 Nodulin-like / Major Facilitator Superfamily protein; Swiss-Prot: sp|F4I9E1|NFD4_ARATH Protein NUCLEAR FUSION DEFECTIVE 4; TrEMBL-Plants: tr|A0A151S7C4|A0A151S7C4_CAJCA Putative transporter MCH1; Found in the gene: LotjaGi1g1v0187400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:36707045..36710404) extracted from Lotus japonicus Gifu genome v1.2.
TCGCCAGCACATGGTGGTTTTCCTTAATTTGGAGGAGGAAACAAACAAAACCCAGGTGGTAGAGGTGGCTAACGAACAAC ACCCCAAGTTCCAGGTGTCATGACCCAAACGAACCTTAACATCACAAAACGAAGAACCCAGAAATTGAGAGAGAGCGTGT GAACATGAACATGGACATGGATTTCTACCACCTTAATTCAAAGTGGGTATCAACAGTAGCAAGCATATGGATTCAATGCA CAAGTGGGTCACTCTACACATTTTCCATCTATTCCCAAACACTCAAGTCAACGCAGCACTACGACCAGTCAACGCTCGAC ATCGTCTCTGTTTTCAAGGACATCGGAGTCAACGTCGGAGTTATCGCCGGTCTCCTATATGATTTCCTTGCCCGCCGCCG CGGAAACACGACTGGACCTTGGGTCGTTCACTTCTTGGGCTCGGTCCTATGCTTCTTGGGCTATTTTCTCATGTGGGCCG CCGTCGTCGGCGTCCTTTCGCCGGTTCCGGCGCCGGTGATGTGCTTGTTCATGTTCGTGGCAGCTCATGCTCAGAGCTAC TTTAACACTTCTAATGTTGTCACCGGCGTTCGTAACTTCCCTAATTATAGCGGAACTATCGTTGGGATTATGAAGGTTTG TTTCATTCATTCATTTCTATTTTTAATAGTGTATTTTCTGAGAGAAATTTTTAATGAAAAATTGTTCATTGCTATTTAAC ATGTTAAAGGTATAATATGAAAAATAAATGTGTTTAAATAAGGTTTTAGGCTATCGTTTTACACAAAATTGGTTTTGGTC TATCATACTATCATCTAATTTTCATGATTTTGGTCTCTACTATCATAGATAATTTTAGTTTCAGTATCTATATTCTAATA TCTTACCGTTAACCAGTGTTCAGAGTAATCCTATGTGACATTTTCAATTAAATCATATCAATAACTAGCCCATTTTATAA TAAAGAAATTTTACTCTATGAAATTTTCTCATAGTTGGTTTATGTCTTAAGAATTCATGATAGACTTAACTCTGCCCAAA AACTGAGAATAGTTGGTTTATGTCTTAAGAATTCATGTTAAACTTAACTCTGCACCAAAAACTGAGAAGAGTTGGTTTTT GTCTTTAGAATACATGTTAGATTTAACTGCTCCAAAAACTAAGGTTTATCTATGCTCCAGAAACTAAGGTAAGCTGCAAA TTTTTGATCTAGTGAATGTCATAACTTAGGAAAAACTTTTCATATAAAAAATTCCCCTTTGACTGATAAATAAAACATAG GGAAAAAACATTCTGTAGTGAACCAATTGTTTTGTATGTTTTCTGCAACATTTTATGGGTACCATACGAATTGTTTTCTA GTATCCATGCTTCTTATACACTAGAGCCAATATGTTGCTAAACTAGACAGTATCTCTGCCTTTAACTACTTGGTGTCTTG CATTGTTTTCATGTTTGGCATTGCATTTTTCCCCTCCTTAATAGGGCTTTCTTGGTCTCAGTGGAGCAATATTAATACAA GTGTACAAAGCAACATTCAACAACAAGCCTATGAATTATCTGCTGATGTTAGCACTCTTACCACCTATCAATACTCTGTT GCTTATGTGGTTTGTAAGAATCCACAACACTCATGAGGGAGAAGAAAGGAAGTATCTAAACATATTTTCTTTGATGTCTC TGGTTATTACTGCATATCTTATGGTGGTTATAATTCTAGAGAACATCCTCAGCCTGCAGTTATTTGTTCACATCGTTATA GTCATTGGGCTTATGGTGTTGCTAGCCTCACTTCTTTGCATTGCATTTAAAGCACAAGAAAGGAGCTCAACTAGTGCTTC AGAAAGTTTTCTTGATGAGGGGTCCCAACTAATTGTGGAGCCTGAGCCCCTGGATACCGAGAAGATGGATGCAAGGCCGG ATTCTTCCAGCAACCCTTTGCTTGATACCAAGAGTCAAAGGGCCCTGCAACTAGGAGAAAACCTGAATCTTGTTCAAGCA GTGCAGACGGTGAACTTTTGGATCTTGTTTGTTTCTATGGCATGTGGTATGGGAGCCGGACTTGCAACAGTTAATAATAT GGGCCAAATAGGGGAATCCCTTGGTTATACCAGCCATGAGATAAGTTCCTTGGTCGGTTTATGGAGCATTTGGAATTTTC TCGGCCGTTTCGGAGCTGGTTATGTGTCAGATTATTTTTTACACACTAGAGGATGGGCAAGACCTTTATTCATGGTCATC ACTTTGTTGGTCTTGAGCATTGGCCTTGTGGTGATTGCTTCTGGACTGCCGAATGCGCTATATGTTGGTTTGATATTAGT TGGTATTTGTTATGGCTCTCAATGGTCCCTAATGCCCACAATCACTTCTGAGATATTTGGTGTGGGACATATGGGTAGCA TATTCAACACCATTACAATAGCAGGTCCAGTGGGATCTTATATATTCTCTGTAAGAGTAGTTGGGTATATATACGATAAA GAAGCATCAGAAGGAAATACATGCACTGGAACTCATTGTTTCATGTTTGCTTTTCTCATAATGGCTTCTGCCACTCTTCT AGGTTCTCTCACCGCTTTAGCTCTGTTTTTCCGGACCAAAAACTTTTATGCTGAGGTTGTACTCAGAAGAATTCGAAATA TTCTGTGATGGAGTAAAACATCATTTGGTAATATACTGTAAAGGAGTGATGAATTTGTTGGGGTTCAGTGACTTATTGGT AAGGTCTTTGCTTCTTTTACTTTGTGTGCTCACGTGCAACTTTGTTAGCAACTCACTTTGATTCTCATGAGTCATGACAC ATCACCAAAGCAGGATACAGATGGGGTGAGGAAAAATTTGGGATTAAAATCACTTTGTACTTGTATGGTACCCTTATAAA AATGTGGAAAGTTGGAAGTACAAAAACAACTCATTTTTACTTTAGACCATCTTTTATGGCTACTCCTACCATGGCATATG AAGTAAGATGAACATTAGGGCTGGTTTGATCTTTGATTATATTCTCCATAATATCTCTTACATATTTTCACTTTTTCACT CACACCAAGGAAGAGGGGAAGTAAGTTATTTCAATCTTTTTTTTTTTTTTCTACTCTTTTACAAGCCCCGTGGATTACCC ACTTTTTGCCATATGCACTGTGGGGGTGACAGGGTATGTGCTTGAATGATTCCTCAGATGTTAAATGGATCAACAGGGAT AGGGGAACAAAGTCCAACTAGTACTTCTCTGGTAAACACTGCAGTAACACTGTAGCTATATATGCACTTTTGTTTGAGCC ATAATTTTCAGATGTGGTCCTTGTATAATGAATGGAACACCAATTTTCGTTTTTCTTCCCTTATGCGCCTGTTCATATTT
CDS sequence (LotjaGi1g1v0187400.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAATTATCTGCTGATGTTAGCACTCTTACCACCTATCAATACTCTGTTGCTTATGTGGTTTGTAAGAATCCACAACAC TCATGAGGGAGAAGAAAGGAAGTATCTAAACATATTTTCTTTGATGTCTCTGGTTATTACTGCATATCTTATGGTGGTTA TAATTCTAGAGAACATCCTCAGCCTGCAGTTATTTGTTCACATCGTTATAGTCATTGGGCTTATGGTGTTGCTAGCCTCA CTTCTTTGCATTGCATTTAAAGCACAAGAAAGGAGCTCAACTAGTGCTTCAGAAAGTTTTCTTGATGAGGGGTCCCAACT AATTGTGGAGCCTGAGCCCCTGGATACCGAGAAGATGGATGCAAGGCCGGATTCTTCCAGCAACCCTTTGCTTGATACCA AGAGTCAAAGGGCCCTGCAACTAGGAGAAAACCTGAATCTTGTTCAAGCAGTGCAGACGGTGAACTTTTGGATCTTGTTT GTTTCTATGGCATGTGGTATGGGAGCCGGACTTGCAACAGTTAATAATATGGGCCAAATAGGGGAATCCCTTGGTTATAC CAGCCATGAGATAAGTTCCTTGGTCGGTTTATGGAGCATTTGGAATTTTCTCGGCCGTTTCGGAGCTGGTTATGTGTCAG ATTATTTTTTACACACTAGAGGATGGGCAAGACCTTTATTCATGGTCATCACTTTGTTGGTCTTGAGCATTGGCCTTGTG GTGATTGCTTCTGGACTGCCGAATGCGCTATATGTTGGTTTGATATTAGTTGGTATTTGTTATGGCTCTCAATGGTCCCT AATGCCCACAATCACTTCTGAGATATTTGGTGTGGGACATATGGGTAGCATATTCAACACCATTACAATAGCAGGTCCAG TGGGATCTTATATATTCTCTGTAAGAGTAGTTGGGTATATATACGATAAAGAAGCATCAGAAGGAAATACATGCACTGGA ACTCATTGTTTCATGTTTGCTTTTCTCATAATGGCTTCTGCCACTCTTCTAGGTTCTCTCACCGCTTTAGCTCTGTTTTT CCGGACCAAAAACTTTTATGCTGAGGTTGTACTCAGAAGAATTCGAAATATTCTGTGA
Protein sequence (LotjaGi1g1v0187400.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNYLLMLALLPPINTLLLMWFVRIHNTHEGEERKYLNIFSLMSLVITAYLMVVIILENILSLQLFVHIVIVIGLMVLLAS LLCIAFKAQERSSTSASESFLDEGSQLIVEPEPLDTEKMDARPDSSSNPLLDTKSQRALQLGENLNLVQAVQTVNFWILF VSMACGMGAGLATVNNMGQIGESLGYTSHEISSLVGLWSIWNFLGRFGAGYVSDYFLHTRGWARPLFMVITLLVLSIGLV VIASGLPNALYVGLILVGICYGSQWSLMPTITSEIFGVGHMGSIFNTITIAGPVGSYIFSVRVVGYIYDKEASEGNTCTG THCFMFAFLIMASATLLGSLTALALFFRTKNFYAEVVLRRIRNIL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 5 | 5 | - | – | |
| Pfam | 2 | 85 | 84 | 1.0E-6 | ||
| PANTHER | 2 | 360 | 359 | 3.8E-161 | – | |
| PANTHER | 2 | 360 | 359 | 3.8E-161 | – | |
| TMHMM | 4 | 22 | 19 | - | – | |
| Phobius | 6 | 23 | 18 | - | – | |
| Phobius | 24 | 34 | 11 | - | – | |
| Phobius | 35 | 56 | 22 | - | – | |
| TMHMM | 35 | 54 | 20 | - | – | |
| SUPERFAMILY | 38 | 351 | 314 | 5.23E-23 | ||
| Phobius | 57 | 61 | 5 | - | – | |
| Phobius | 62 | 86 | 25 | - | – | |
| TMHMM | 64 | 86 | 23 | - | – | |
| Phobius | 87 | 153 | 67 | - | – | |
| Gene3D | 147 | 353 | 207 | 3.5E-15 | – | |
| CDD | 148 | 338 | 191 | 2.42131E-67 | – | |
| ProSiteProfiles | 154 | 365 | 212 | 8.528 | ||
| Phobius | 154 | 174 | 21 | - | – | |
| TMHMM | 156 | 178 | 23 | - | – | |
| Pfam | 159 | 349 | 191 | 1.3E-9 | ||
| Phobius | 175 | 193 | 19 | - | – | |
| Phobius | 194 | 213 | 20 | - | – | |
| Phobius | 214 | 224 | 11 | - | – | |
| TMHMM | 221 | 243 | 23 | - | – | |
| Phobius | 225 | 243 | 19 | - | – | |
| Phobius | 244 | 248 | 5 | - | – | |
| Phobius | 249 | 271 | 23 | - | – | |
| TMHMM | 250 | 272 | 23 | - | – | |
| Phobius | 272 | 282 | 11 | - | – | |
| TMHMM | 282 | 304 | 23 | - | – | |
| Phobius | 283 | 304 | 22 | - | – | |
| Phobius | 305 | 323 | 19 | - | – | |
| Phobius | 324 | 347 | 24 | - | – | |
| TMHMM | 325 | 347 | 23 | - | – | |
| Phobius | 348 | 365 | 18 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Transmembrane transporter activity | Enables the transfer of a substance, usually a specific substance or a group of related substances, from one side of a membrane to the other. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi1g1v0187400.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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