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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0187600 |
| Transcript ID | LotjaGi1g1v0187600.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Nodulin-like / Major Facilitator Superfamily protein; TAIR: AT1G74780.1 Nodulin-like / Major Facilitator Superfamily protein; Swiss-Prot: sp|F4I9E1|NFD4_ARATH Protein NUCLEAR FUSION DEFECTIVE 4; TrEMBL-Plants: tr|I1KCN7|I1KCN7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0187600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:36742604..36744351) extracted from Lotus japonicus Gifu genome v1.2.
CTCATGTTTCTGTTGAGGATCTATGAAGTGCACGGGGGTGATTACAAGAAGCATTTGGATAGTTTCTCCGTGGTCACGAT GATTATTGTTGCCTATCTCATGTTCATAATAATTTTGCAAAACTTTGTGACTTTATCATATTGGGCGCGGATGTTTGTAT TTGTGTTACTTGTGGTTCTACTAGCATCGCCTTTTGGCATTGCTGTCAAAGCCCAGTGGGAGGAGTCGCGGGAACTCGCC GCCGCTTCAATGGAATATCAACAGCTGCCTAGTGATGAGGGGGGAGCACAGGTGGGTCCAGATGATGTGATGCCACGTGA AGAAGAAAAGAACCTCTTGCAAGCTATGTGCACGGTTGAATTCTGGATGTTGTTTGTGACCATGATATCAGGATTGGGTT CTGGGCTTGCAACTATAAATAATATGAGCCAAATTGGGGAATCTCTTGGGTATAGTACTATTGAGATTAATAATTTGGTG TCACTTTGGAGCATGTGGAATTTCCTTGGCCGTTTTGGAGGTGGTCACGTATCGGATTATATCATGCACAAAAGAGGTTG GCCTAGGCCCCTGTTGATGGTTGTAACTCTAGGGGTAATGATTATTGGCCATGTAGTTATAGCTTCTGGTTTCCGTGGGA ATTTGTATTTGGGTCCTGTTCTGGTGGGCATCAGCTATGGTGCACATTGGTCCTTAATGCCTACAATCACTTCTGAGATA TTTGGTGTGAAGCATATGGGTACCATTTTCAATACTATTGCTGCAGCAAGCCCAATTGGGTCTTATATACTTTCTGTGAG AGTTGTTGGATATATTTATGACAGGGAAGCTATTGAAGAAGATAACTCATGCTTTGGCATCCACTGTTTCATGTTGTCAT TTTTTATTCTGGCTGGTGTGGCTTTTCTTTCATTTTTGGTTGGTCTGGCATTGTACTTCCGGACACAAAAGTTCTATAAG CTAGTTGTTCTTAGAAGATTAAAACATTATGCACGATGATGAAGGAAACTTTGCTAAGCTCTATGCCATTTTAATATTTT CAAATCTCACTATAAATTTCTCTTCTGTACTTAATGTTCCATCTTCATTTAATGTGTTTGAAGGAAACTTTGCTGAGCTC TATGCCATTTTGAAGGCAACTGACAAGGTTTGTAATCCTCCCACACGAGTATGGCTCAGATTGCCAGAAGTTCATAGATA GCTCTTTTCATGCCCTCAAAGACACACTATTCTTAGCATTCTTATATCTGGGGTGCCTGCCACCATGCTGCTGCTGCTGC TGTCACCTCTGCTTTCACCTCTGTTACTTTAAAAGATGAAAGAATGGATTGCACGGTTAGCTAAGATGGGAGCAGCAGAG TCAGCAGAACAACAGGCTCCACACCTTCACTTTGATCTTGAGTCTTCTTACAATTCCTTTATGGTAGCTCTGTCCAATGC ACTAGCATGATTGAATGAGGGTATGCTTGTTAATAAATTTATTTACTGGTAGTTTTTGTTTTTTTTTTTCCCTTTTTTTA TTGTATTTGTTGTTGAGGAATTGGCTATTGGTGAAAACTTACATATTTTAAAGGCTGTACTCTTACATATTATTATGGCT TTTTTATGCTTATCATTAAAGCTTTTAATTTGTGGCGTGAACGAGGTTTGACATCTTGATTTATTTCCTGTAGTTGTTTG GTTGAGTTTCCCTGTACTTTTGGCAACAATCCTATATTCAGACACCCCGACCTCGTTTTGGTTTGATA
CDS sequence (LotjaGi1g1v0187600.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTTCTGTTGAGGATCTATGAAGTGCACGGGGGTGATTACAAGAAGCATTTGGATAGTTTCTCCGTGGTCACGATGAT TATTGTTGCCTATCTCATGTTCATAATAATTTTGCAAAACTTTGTGACTTTATCATATTGGGCGCGGATGTTTGTATTTG TGTTACTTGTGGTTCTACTAGCATCGCCTTTTGGCATTGCTGTCAAAGCCCAGTGGGAGGAGTCGCGGGAACTCGCCGCC GCTTCAATGGAATATCAACAGCTGCCTAGTGATGAGGGGGGAGCACAGGTGGGTCCAGATGATGTGATGCCACGTGAAGA AGAAAAGAACCTCTTGCAAGCTATGTGCACGGTTGAATTCTGGATGTTGTTTGTGACCATGATATCAGGATTGGGTTCTG GGCTTGCAACTATAAATAATATGAGCCAAATTGGGGAATCTCTTGGGTATAGTACTATTGAGATTAATAATTTGGTGTCA CTTTGGAGCATGTGGAATTTCCTTGGCCGTTTTGGAGGTGGTCACGTATCGGATTATATCATGCACAAAAGAGGTTGGCC TAGGCCCCTGTTGATGGTTGTAACTCTAGGGGTAATGATTATTGGCCATGTAGTTATAGCTTCTGGTTTCCGTGGGAATT TGTATTTGGGTCCTGTTCTGGTGGGCATCAGCTATGGTGCACATTGGTCCTTAATGCCTACAATCACTTCTGAGATATTT GGTGTGAAGCATATGGGTACCATTTTCAATACTATTGCTGCAGCAAGCCCAATTGGGTCTTATATACTTTCTGTGAGAGT TGTTGGATATATTTATGACAGGGAAGCTATTGAAGAAGATAACTCATGCTTTGGCATCCACTGTTTCATGTTGTCATTTT TTATTCTGGCTGGTGTGGCTTTTCTTTCATTTTTGGTTGGTCTGGCATTGTACTTCCGGACACAAAAGTTCTATAAGCTA GTTGTTCTTAGAAGATTAAAACATTATGCACGATGA
Protein sequence (LotjaGi1g1v0187600.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MFLLRIYEVHGGDYKKHLDSFSVVTMIIVAYLMFIIILQNFVTLSYWARMFVFVLLVVLLASPFGIAVKAQWEESRELAA ASMEYQQLPSDEGGAQVGPDDVMPREEEKNLLQAMCTVEFWMLFVTMISGLGSGLATINNMSQIGESLGYSTIEINNLVS LWSMWNFLGRFGGGHVSDYIMHKRGWPRPLLMVVTLGVMIIGHVVIASGFRGNLYLGPVLVGISYGAHWSLMPTITSEIF GVKHMGTIFNTIAAASPIGSYILSVRVVGYIYDREAIEEDNSCFGIHCFMLSFFILAGVAFLSFLVGLALYFRTQKFYKL VVLRRLKHYAR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 326 | 326 | 7.1E-154 | – | |
| Phobius | 1 | 20 | 20 | - | – | |
| PANTHER | 1 | 326 | 326 | 7.1E-154 | – | |
| TMHMM | 20 | 42 | 23 | - | – | |
| Phobius | 21 | 41 | 21 | - | – | |
| SUPERFAMILY | 26 | 316 | 291 | 3.4E-21 | ||
| Phobius | 42 | 46 | 5 | - | – | |
| TMHMM | 46 | 68 | 23 | - | – | |
| Phobius | 47 | 68 | 22 | - | – | |
| Phobius | 69 | 110 | 42 | - | – | |
| Phobius | 111 | 136 | 26 | - | – | |
| CDD | 112 | 302 | 191 | 3.19569E-63 | – | |
| Gene3D | 113 | 317 | 205 | 3.8E-13 | – | |
| ProSiteProfiles | 118 | 331 | 214 | 9.825 | ||
| Pfam | 123 | 316 | 194 | 4.5E-11 | ||
| Phobius | 137 | 147 | 11 | - | – | |
| Phobius | 148 | 168 | 21 | - | – | |
| Phobius | 169 | 188 | 20 | - | – | |
| Phobius | 189 | 210 | 22 | - | – | |
| TMHMM | 190 | 209 | 20 | - | – | |
| Phobius | 211 | 215 | 5 | - | – | |
| Phobius | 216 | 236 | 21 | - | – | |
| TMHMM | 219 | 241 | 23 | - | – | |
| Phobius | 237 | 247 | 11 | - | – | |
| Phobius | 248 | 272 | 25 | - | – | |
| TMHMM | 248 | 270 | 23 | - | – | |
| Phobius | 273 | 283 | 11 | - | – | |
| Phobius | 284 | 312 | 29 | - | – | |
| TMHMM | 290 | 312 | 23 | - | – | |
| Phobius | 313 | 331 | 19 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Transmembrane transporter activity | Enables the transfer of a substance, usually a specific substance or a group of related substances, from one side of a membrane to the other. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi1g1v0187600.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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