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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0190900 |
| Transcript ID | LotjaGi1g1v0190900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Zinc finger protein; TAIR: AT5G61190.1 putative endonuclease or glycosyl hydrolase with C2H2-type zinc finger domain-containing protein; Swiss-Prot: sp|Q8AVN9|ZN346_XENLA Zinc finger protein 346; TrEMBL-Plants: tr|A0A072UVJ5|A0A072UVJ5_MEDTR C2H2 type zf-met: zinc-finger protein; Found in the gene: LotjaGi1g1v0190900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:37648064..37653299) extracted from Lotus japonicus Gifu genome v1.2.
GTAATAAAGCCATGAGGAAAAGGAAAAAGGCCATGGTGAGTGGTACCTTGATCGAACTATAAAATAAAGGCCCAGAAGTT CTTAACACACTGTTCTCTCCCTCCCTCATTGTTTTTAGCATCATCATCACTTGAGGGAGTGGAGTGATTTGAGTTGAACG CTTAACATCAATTGGTCCAAAATGTACCCACAGCAACAGCAACATCACCTTGTTCCCGTCACCAATTTGCAGCAACCGTA CTATTCTGCAAACCCATATTTGATACCTTACCCTCACACCTCAGATTCTGCAATTCATCCTCCTGGCACCGACCCACCTG GAAATTCAACTTCTTTATCTGTTCCTGATGCCCAAACAACAGATTCTCAGTACTGGGTCGTCGCTGAACCCATCAGATAT GATCTTGTTAGTCCCCTATTTGATCAAAGTTTTCAAATTTATAAACAAAATCAAATCTTTCTCATGTTATGTCATCTGGG GTTCTCACCCACTTTGCAATGTTTTTTGTCATTCTGTTTATTGATGTTCTTTTTACATTTCTTTTCCAATTATTATTGCT TTTATGTAAGTTGTTTAATCAAAAAAGCTTTTGCCTAATTTTGAAGTAGTTGATATTTTTTTTTTTTGTAGAATTTATCA CTTGTAGGGGGAATGTGGAGTTCCAATATGTGGTGGGTGTTGAAATTTGTCTTAATCTTTTGGTTAACATGTTAGGAAGT GAAAGGAAAGGATGTAGTTTAGCAGTGGCATGATTGTCATAAGGATTTGAGTATCCTCCTCAACACTAACTTGGATGTCA TAACCTACCCATGTCAGTTTTCATTTTGGTGGACTACCGAAAAGCTTTCTATTGATAAAATACCATGGATCTCTAGCTTA AAGAAGTAGAGATAGAAGCCAAATTCTTGGCAATCATTAATTATGATTTATGAGTGTCTTTGTATGCATGTTTCTTGTAG GTTTTTGTTCTTTGTTAATGTGATTCTTTTCAATGACAATTTGAGAAATATGGAAGGCAGAAGAAGAAATTGGAACCCTT TTTGATGATTTATTAATGGTAATGATTACAAAATATTTAATGTAAACTGAAATAGGAGAATTGCTATATATGTTATTGTT GTTAATATAGGATGTGATGTGTTCAAGTATATAAATCAGGGTGTAAAGTGCGGTTAGAATAAGAAATTAAGGAGGTAAAC TACATTTTGAATTTAAATGGAAGCTTCAGATCTGCACTGTGGTTTTGAATTCCAATGCTTCTAATATGCAGGCTTCTGGT TCATCACATGTGACTCCAGTGGCGTCTGCAAGTTTGCCTTATGCATGGAATGGCGCATGGTCACATCAAGTTTTCACTAA TGATGCCACGGTTGTGTTGCCTCATAAAACCAAAGTCACCAAAGCAATGCGATGTGAAGTTTGTAAAATTGATTGCAATA CTGCAGATGTTTATGAAAAACACATATTGGGAAAGAAACACAAAAAAAAATTGCAGGTATGGAATAATCCCACTACTGCA TTATTACCGGGACCCTCTCATGCAAATGTGCAAAGTTCGACAAGTGGTATCCAAGGACAAGTTCAAGTTGGGGCTGAAGG TGAGGAATTAGAATCTAAGAAACGGAAGGATTTGAGTGGTGGAACACCCATGGACTCCGTAAAGATTTGCACGGTGTGCA ACGTTATGTGCAACAGTGAAGACACGTATAGCAAGCATCTAGCTGGGAAAAGGCATACGGCTCAGGTGAATTGTAAATTG AATTATCCTTTTGTAAGATTACATGCCATGTTGGGATTTGCTGTGTTACCTAATATCTATATTATGGTTGTTAGACGAGA GAGAGTGTGTATCAAACAGAGTTCTTTATCAAGAAACTACGCTTTCATTGACTAATTGAATTACAAGCATGACTCTTATA TATTAGGCCCACTTAGTTATTAACGGCATTTCATGTTTTTACGCAATTTAGTTTAGGAATTAGAGACTTAACTTCTTGGT TACTAATAGGTACTCACACTCTCACAGTTACGGGTCAGTTAGGGGTTACTAGTTGGTTAGTTGGGGTTAGGAGTTAGTTA CAGAGTGAGTCTATAAATAAGTGAATTAGAGAGAGAATAGGGGATCTTTGTATTAATTTTGATATTGGGGTTTAGGGAGA GCATTGGATCTCTCTTTGGGTTAGGGAGAGTGTTTGGTATCTCTTTGCATCTTCCCCTAATTCCTATTTGGGAATTAAGG TAATATCAGTTCTTGGTTGGGTTCTGTCAGACCTTGGCTTTTGTTGGTACTACTATGTTTTGTTTATGATACCTATGACT TTTTAATGTTAAATATGGCTGGCATGAATTTTTTATTTTTTCAACCTTTTATATGTATATAGTTATAGTATATAAACTAT ACAAAAAAATTAGTATAGCAGCCGGATTGCTATGCGCTATACCGCTATAGCATTGTTGGGGTCGGCCACTACACTCCGCT ATCCGGGATTGACAACACTGATTTTTTCTTGTATTCAACTTATTCTAATTGAAGCAGCACATTAAACAGTGACCGAATCG GTCTTCTTTCATTTTGAAAATTCTCGATCTTCACTTTTGCTGCAAGTACTGTAGTAATCATTTGTGTCTTGAATTTTATT CAACAACAACCAAAACCTTTTCAGCTGAGTGAGGTTTGCTGCATGGATCTAGTGATGACATAATGTCTTAAGTAACATTA ATTAAGTCTAATGATAGACCATTTAGCTCTAAATCTCTCCTAATAGTTTAATCAATATTTGTTTGTCTCTGTCTACTATC CTCCTAACCAGATTTCATTTGTCTAATCTTCACAACTTTTGAAGAGTCAAATATGATAAATTTATATCTTAACATTGATA GGCCAATTAAGTTAGAGATTAGTTATCTGGTTTTTGAATCTTGATGAAACAGTGAGGACCTGATGCTGACCATTTACGAA ATTTTGTACTGTAACTCAATTTTTGTTGGGGTCCAATTGAATGGTCTTATAATTCGGGTTAGTCCTAACTGAGACCCACA TACTCAATGCCTTAACATTTTGGGTGGAGATGCAGTGTCCAGTTTTCTGGCCAGCTTGTATAGCCTTTACTCATGGTTGC TTGAGAAATGAGAACCCCTATCTTCCCAACAAGGGGCATCAGAGCTGCGACCATAGTGACGACTCCTTCTATTAAAAGTC TTTCCTAGAGACCTGGAGGTCATGAGGCGTGTCCCGTTGATGTGATGCGAGGGAACAGGGGTATAGTAATGTGGTGGTGA CTCACTTGAGGGGGAGATTGTTGTGAATACAAGTGTGAATTTAGATACTCACATTAGTTAAAAATGAGGTAGTTGAAGGC AATATTAGATAAGAGGCCCACATACCCAATACCTTAAGGCTTAGGGTGAAGATGTGCTGTCTGATTCTCTAGCTGTCCTG TACAATCTTGGCTTATTGTTGCTTGAGCTCCTCCTATATCTCGAACAAGACAAGGTATGGGACTTGAGTCCCACATTGGA AGTATTATATTTTAGTGTGAGGTTTATAAGGCATTGATCTGCAAACAAGCGGAGGCACTGGTAGTGACGCTGGCATTGCA TTGCTCGTCCAAGACTAGTCAAAGGTCTAGTGCACTGCATGGGCGTCAGGGTTGCAAAGCATGGTGAAATGTTAGGATCG TATTGCATGGTATGAGACTTGAGTCCCACATTGGAAGTATGAGATTCTAGTTTGGGATTTATAAGGCATTGGACTCTTCA ACTACAACGACTAGCTTTTGTGGTATGGTTCTCTGAAGGTTCTTATCTATTTTTAAATTTATATCATGTTTTAATAATTG ATCTGCTGTATTTTGTAGTGAGTTGCTTGATTGGAGATTGCTTATTTCAATTAGATTTTATTTTTAGTACTTTCTTGCTG TCATTTTCTGTGGTTGTATTTCTATAAATAGATCAATCAAGCTGTTGTATTCAATAATACGTACATTTGCTAAGTTGCAC ATTTGTGTATTGCTTTACATGTTGATCATCCGTAGGTTGGCTTGATGAATAATAATGGGATTGGTCCTTCTGTTGCTGCA TTCAAGCGTCGAAAAGCTCCAAAGAAAATACAGGTTGCTCAATCAGCATGGTGTGAAGTTTGTAAGATTACTTGTGACAC CAAGGATATGTATATTATCCACTTATCTGGGAAGAAACACCTGAAAAACTTGGAGAAACTGTCAAAACCAGAAACTGGTG TCGGTGCCAGTGCCGCACCTGCAAATCCAATAATCGGGCCACTGGAAAAGCCAGGTTCTGATAAACCAAGAAAGGCACCA GAAATGGATATTGAGACAAAGAAACGTAAAATTGTTGAAGGAGGGGCTGCAGAAGCTGCTGTTAGATTGTGCGATCTATG CAACGTGGTGTGCAACAGCGAGAAAGTTTTCAATACTCACCTTGTTGGACATAAACACGCTGCTATGGTGAAGAAGAAGC AGGCAGAGTCAAGCACTAGCTGATGTGGTTGATGCTGCCATAGTGGAGAGACTGTGCTGTTGTTATAAGTTACAACTGTT CTTAGTTGATATTTAAGAGTACCAGAGGAACTCACAACAATTTGTGATTTAGAATATAAATGTTTTTAACATCCGAGATG CATGGAGGTTCTGCAAAATTGATTTCAGTAGCAAAAAGGTTTATGACAAGCACATATCAATAAGGATAACTACTTACTAA AGTTTACATACAGGGCTTCGACTTTCTACCATAAGCTGGTTGAAGTCTAGATTTTTGTTCCTCATCAAGGTATTGAATTC TTCTTGGATGATTTGATGCTAATGTGGCTGAGCAAGAGCCTGAGTCACAATGGAGGGTGCTGCAGTTCTCAAACAAAAAT TTTAGAATTCGATGAAGTAGCAGCCAGCGCTGAAGGACTTTGGTTTTAGAAATTCCAACTTTGGATCTATTGATCAATAG GATAATTGTTCACAACTTCCACTATAGTGGTAAATTGAGAATGCACTAGATAAACAATTGTTGGTTCTAATAACATGTGA TAGAATCAAATTATGACTGAACATGAAGGTCACCGATGGTCATGAGAAGTGTCAAAAGGGCATTTTTAGAATTTAAATAA AAAAAAAACCAATAGGGTATAAATAACATTTTTGGTTTGTGTAAATATCAACCCCTAAATTTATTTGGTCATAAGGGGGC ATAGGTGCCCAAACATTAAGACAAGCTTCCTCATCC
CDS sequence (LotjaGi1g1v0190900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTACCCACAGCAACAGCAACATCACCTTGTTCCCGTCACCAATTTGCAGCAACCGTACTATTCTGCAAACCCATATTT GATACCTTACCCTCACACCTCAGATTCTGCAATTCATCCTCCTGGCACCGACCCACCTGGAAATTCAACTTCTTTATCTG TTCCTGATGCCCAAACAACAGATTCTCAGTACTGGGTCGTCGCTGAACCCATCAGATATGATCTTGCTTCTGGTTCATCA CATGTGACTCCAGTGGCGTCTGCAAGTTTGCCTTATGCATGGAATGGCGCATGGTCACATCAAGTTTTCACTAATGATGC CACGGTTGTGTTGCCTCATAAAACCAAAGTCACCAAAGCAATGCGATGTGAAGTTTGTAAAATTGATTGCAATACTGCAG ATGTTTATGAAAAACACATATTGGGAAAGAAACACAAAAAAAAATTGCAGGTATGGAATAATCCCACTACTGCATTATTA CCGGGACCCTCTCATGCAAATGTGCAAAGTTCGACAAGTGGTATCCAAGGACAAGTTCAAGTTGGGGCTGAAGGTGAGGA ATTAGAATCTAAGAAACGGAAGGATTTGAGTGGTGGAACACCCATGGACTCCGTAAAGATTTGCACGGTGTGCAACGTTA TGTGCAACAGTGAAGACACGTATAGCAAGCATCTAGCTGGGAAAAGGCATACGGCTCAGGTTGGCTTGATGAATAATAAT GGGATTGGTCCTTCTGTTGCTGCATTCAAGCGTCGAAAAGCTCCAAAGAAAATACAGGTTGCTCAATCAGCATGGTGTGA AGTTTGTAAGATTACTTGTGACACCAAGGATATGTATATTATCCACTTATCTGGGAAGAAACACCTGAAAAACTTGGAGA AACTGTCAAAACCAGAAACTGGTGTCGGTGCCAGTGCCGCACCTGCAAATCCAATAATCGGGCCACTGGAAAAGCCAGGT TCTGATAAACCAAGAAAGGCACCAGAAATGGATATTGAGACAAAGAAACGTAAAATTGTTGAAGGAGGGGCTGCAGAAGC TGCTGTTAGATTGTGCGATCTATGCAACGTGGTGTGCAACAGCGAGAAAGTTTTCAATACTCACCTTGTTGGACATAAAC ACGCTGCTATGGTGAAGAAGAAGCAGGCAGAGTCAAGCACTAGCTGA
Protein sequence (LotjaGi1g1v0190900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MYPQQQQHHLVPVTNLQQPYYSANPYLIPYPHTSDSAIHPPGTDPPGNSTSLSVPDAQTTDSQYWVVAEPIRYDLASGSS HVTPVASASLPYAWNGAWSHQVFTNDATVVLPHKTKVTKAMRCEVCKIDCNTADVYEKHILGKKHKKKLQVWNNPTTALL PGPSHANVQSSTSGIQGQVQVGAEGEELESKKRKDLSGGTPMDSVKICTVCNVMCNSEDTYSKHLAGKRHTAQVGLMNNN GIGPSVAAFKRRKAPKKIQVAQSAWCEVCKITCDTKDMYIIHLSGKKHLKNLEKLSKPETGVGASAAPANPIIGPLEKPG SDKPRKAPEMDIETKKRKIVEGGAAEAAVRLCDLCNVVCNSEKVFNTHLVGHKHAAMVKKKQAESSTS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 32 | 55 | 24 | - | – | |
| PANTHER | 35 | 386 | 352 | 1.0E-96 | – | |
| PANTHER | 35 | 386 | 352 | 1.0E-96 | – | |
| SUPERFAMILY | 98 | 152 | 55 | 1.64E-9 | ||
| Gene3D | 112 | 152 | 41 | 9.2E-10 | – | |
| SMART | 118 | 152 | 35 | 0.11 | ||
| SMART | 121 | 145 | 25 | 8.5 | ||
| Pfam | 123 | 145 | 23 | 3.0E-5 | – | |
| MobiDBLite | 160 | 179 | 20 | - | – | |
| MobiDBLite | 160 | 198 | 39 | - | – | |
| Gene3D | 191 | 242 | 52 | 8.6E-10 | – | |
| SUPERFAMILY | 197 | 234 | 38 | 1.14E-7 | ||
| SMART | 203 | 237 | 35 | 0.0034 | ||
| SMART | 206 | 230 | 25 | 5.8 | ||
| Pfam | 207 | 230 | 24 | 3.3E-8 | – | |
| Gene3D | 251 | 300 | 50 | 2.2E-10 | – | |
| SMART | 261 | 295 | 35 | 8.9E-4 | ||
| SUPERFAMILY | 262 | 295 | 34 | 4.76E-8 | ||
| SMART | 264 | 288 | 25 | 51.0 | ||
| Pfam | 265 | 288 | 24 | 3.2E-6 | – | |
| MobiDBLite | 300 | 331 | 32 | - | – | |
| Gene3D | 343 | 385 | 43 | 5.9E-10 | – | |
| SMART | 347 | 381 | 35 | 3.0E-4 | ||
| SMART | 350 | 372 | 23 | 9.6 | ||
| SUPERFAMILY | 350 | 383 | 34 | 3.68E-9 | ||
| Pfam | 352 | 374 | 23 | 1.7E-7 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of LotjaGi1g1v0190900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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