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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0200000 |
| Transcript ID | LotjaGi1g1v0200000.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein; TAIR: AT5G06540.1 Pentatricopeptide repeat (PPR) superfamily protein; Swiss-Prot: sp|Q9FG16|PP367_ARATH Pentatricopeptide repeat-containing protein At5g06540; TrEMBL-Plants: tr|A0A0R0JKI3|A0A0R0JKI3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0200000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:42316226..42320284) extracted from Lotus japonicus Gifu genome v1.2.
TACATAACAAATCATATGCAGACTTGGTGTTAAACACTCCATCGCTTGACTCACCCAATGAGAATGCTATAGATACTGTT TGAGACAGCCTAGTATATCCAGCCATCGGAAGTTCAAGTTGGCTTTGTAGTGTGTTTTATTAGGTGTTGCAAGGCAGAGG AAAATGCAAGAGCAGGACCATCATCACCATTCAATATAATATTCACATGAATCAAAACAACCTAACATCCCTTGTTAAAA AATGTAAAACCCTAACCCAACTGAAGCAAGTTCACGCCCACATCCTCCGATGCCGCCGCATCAACCACATCGCCCCGCTC CTCTCCGCCGCCGCCGCCACCTCCAATTTCTCCTACGCCCGCTCCATCTTCCTCCACCTCACCCACCGTAACACCTTCAT CCACAACACCATGATCAGAGCCTACCTCCTTCACGCCCCTTCCCCCGCACCCGCCCTATCCTGCTACTCCTCCATGCTAC GAACCGGCATCACCGTTAACAACTACACCTTCCCACCTTTAATCAAGGCATCACTTGCCCTCCTCTCTTCTTCTTCTTCT TCCAACTTCACTGGCCGTTTGGTGCACGGCCATGTCGTTAAATTCGGGTTCCATGATGACCCTTACGTCGTCAGCGGCTT CATTGAGTTTTACTGCGCTTCACGGCAGCTGCAAACGGCGAGGCTGCTGTTCGATCAAACGACCGAGAAAGACGTCGTGT TGTGGACGGCAATGATTGACGGTTATGGCAAAGTTGGGGATGTTGAAAGTGCCCGAGAACTGTTCGAGGAAATGCCTGAG AGAAATGCAGTGTCGTGGAGTGCCATGATGGCTGCGTATTCCCGGGTTAGTGACTTCAAGCAAGTGCTGGCTTTGTTTGA GGAGATGCAGAACCGAGGAATGAAGCCAAATGACTCTGTTCTTGTTACTGTCCTCACTGCGTGTGCGCATCTCGGTGCCC TCACTCAGGGACTGTGGGTGCATTCCTATGCCAAGCGGTGCAAGGTTGATTCGAATCCGATCCTGGCAACGGCTCTAGTG GACATGTATTCCAAATGCGGGTGTGTGGAGTCAGCGTTAACGGTTTTTGAGGGAATTGCTGATAAGGATGCTGGAGCATG GAATGCTATGATTTCTGGTGTTGCCTTGAGTGGTGATGTGAGGAAGTCGCTGGAGTTGTTTCATCAAATGGCTGCTCATG GGACCCAACCCACTGAGACTACCTTTGTGGCTGTCCTCACTGCTTGCACGCATGGTGGGATGGTTCATCAAGGTCTTAGG TTGTTTGAAGAAATGAGTTGTACTTATGGAGTTGAGCCGCGGGGGGAGCATTATGCGTGTGTTGTTGACCTTTTGTCTAG AGCTGGCATGGTGAAGGAGGCTGAGAAGTTTATGGAGAAGATGGGTGGACTTGTGGAGGCGGACCTTAATGTTTGGGGTG CTATTCTGAATGCTTGTAGAATTTATAAGAATGTTGATGTTGGGAATAGAGTGTGGAAAAAAATGATTGATAAGGGCGTA GCTGACTGTGGCACTCATATTCTTACATACAATATGTATAGAGAAGCTGGGTGGGATGCAGAGGCAAAAAGAGTTAGGAG TATGGTTTCAGAAGCGGGGATGAAGAAGAAACCTGGGTGCAGCATAATAGAGGTCGGTGATGAAGTTGAAGAGTTTCTTG CAGGTGATCATTCTCATCCACAAGCACAGGAATTATGCAAATTACTTGATTCAATTCTTATGATGGCAAATTTGGAGCAC TTCTGAAGGTATTGCCTAATCATCTTCTTACATGCTTTAGCATAATTATAGTTTTTTTGCCAGAGCTTATAGTCATGCAA AGGAAAATCAAATACAATTTTGATTCCTTTGTTGATTAATTCTTGAGAGCAGTAGCTGCGAAAGGACAAAAAGAAACATG GGAAAGAAAAGTAAAATAAATAATGTATAGACAGGATATACTACGGCAACTAGAAGATGCCCTTGTATAAAGAACTGGGA GTATATTTCTCACTGGCTTGTTTCAGTTCCAGGCATAGGCATCTTGCCCATGCATTATATAATTGAATCTCATATTTTCT ATAATTGTACGGAGTACAACAATTGCATTGGATTACTTTTCATGCTGTGAAATGTAATCAGTGATGTGAGCATTCAATAG TTTTTTACTACAAATTCGGTTTCCCTTGGTTTGCCATTTTGTTCACTCATCTTTCATTTTTTACATGATTGCACATCCTC AGGTGTTAACTGTGGAAAATAATTTTTTGCCTCTCAGCTATTGGGTGATGGAAAAGCAGCAATGAGCCATTCATGATATT AGGTATTTCAGACTCAGGTGTCAAGCACACTGATTTGTCTGAAAATCTTCACACTGATTTGTCTGAAAATCTTCACTTGA TAACAAAGTATTGATAAGGCATTTCAAGCCTTTCAGCTACAGGCCTGATCCTAAGGTCAGTTGTATGTCTTGTGAATTGT GATTGAATACTGTTTTGTGTTGTTTAAATTTGCATGACTGAACCACCTGCTTGACACATAACCATCTGCATTTCATCCCA AGAGTTCAGTATCAATCTTAACAAATGATGATATAGGATGACCCTGTCAATAATGTTGAATCGATGTGTTGCGTGGATTA AGGATTGGATCATAGGGCCCCTGAATGTTGTTGCGGGGATTAGGGATTGGATGCTGAATGTATTTGTGTAGATTAGGGAT TGGATCATGGGTCCGGTGAATGTAGTTGTTGGGGTGGACTAGGAATTGTATCAGGGGGCCTGCACGTCCTACTCAGGACC AGTGCACTTACACAAAACATTTCATCAATGTGTCAATCAGAACATGTGCTTATGGGCACGCATCCTTGCCAAACAGTCCC TCATTGAGCTGGTTGTGGTTCTTGTCCTGAATAGCTACATTCAGCATCCAATTCTTAATCCCTGGCTCCCCACAACAACT ACATTCCGCGGCCCCATGATCCAATCCCCAATCCACGCAACAAATTGATTCAGCATCATAAGCAGGGTCATCCTATATCT TCAATTTAGTAGTGTTACAAAACTCCTCGGAATTGCAGATGATTGTGAAAATATCCTCCACGAAAGGACAAAAAGTTGGC ATAATACATCAAGACAATTCTTGGCAAGTTATCCCACCGCAAGAAACAGTATTCAATGAACGGGGGAGAGAGCATCATCC AAGCAGAACCTGAGCAAGATAAAGGATCAAAGTTAAATTACTTAAGCAGTGCGGAGCTGGGATTATGAATTTCAAGAAAC TTTATACAGATTTAGTCCTTTAGTTTTAGTAGTCATTTATTTCAGACTCCAATGTTTGGTATCATTGACTTTGGAGAGAG GTGTCGAAGAGAGAACTTGGCAAGAAAAAATGATCTACCTTCATTTGGTTCCACTTACTGTAGGGAAGAGAGAATTGGCA CATGCTAGAAAAAGGCACTTTTTGGGATCTGCTTAAAAATCGAAGAGATGAGATAGAGGCTTGACTACTTTGTTTTTTTT CCTTATTTATCCTTGTAAAGTGGTTCTTAAACTGTGAGCATCTAGGATACAAGTGACTTTTGATAAAAAAATTATTTTCT TTAGAACTAAAGAAATATACATTGTTAGTGTAAACATATTTTACACAGTCATCCAATTGAATTTCGCGCATCATAAAACG TATCTTTGTTTTAATTAAAATTTAATATGAAAACTATTATTTCTCCTACGTGGCATGTTGTGATTGGTTGTCAGTGTAAA ACTGTTTTACACACTGTGTATATCCATTAAACTCATTTACTCTATTTCTCGCCATTTTTTCTCTACTTAACTTCTCTCTT CTCTATCTCTCTCCTCTCCATCTCTCTTATTTACCAAACATAGTGGTAAATTGGTCAACTCATGCAACAAATTAGTGGCA AATGGCATTTCTTAGTACTACATTCCCATATTTGATTATGCTAAAAAGTTGACCAAGAGGAAAGTAACAACATAGTGTTT TATCAGCATAAGCGGCAAGAGTTCCTCACCTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
CDS sequence (LotjaGi1g1v0200000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAATCAAAACAACCTAACATCCCTTGTTAAAAAATGTAAAACCCTAACCCAACTGAAGCAAGTTCACGCCCACATCCT CCGATGCCGCCGCATCAACCACATCGCCCCGCTCCTCTCCGCCGCCGCCGCCACCTCCAATTTCTCCTACGCCCGCTCCA TCTTCCTCCACCTCACCCACCGTAACACCTTCATCCACAACACCATGATCAGAGCCTACCTCCTTCACGCCCCTTCCCCC GCACCCGCCCTATCCTGCTACTCCTCCATGCTACGAACCGGCATCACCGTTAACAACTACACCTTCCCACCTTTAATCAA GGCATCACTTGCCCTCCTCTCTTCTTCTTCTTCTTCCAACTTCACTGGCCGTTTGGTGCACGGCCATGTCGTTAAATTCG GGTTCCATGATGACCCTTACGTCGTCAGCGGCTTCATTGAGTTTTACTGCGCTTCACGGCAGCTGCAAACGGCGAGGCTG CTGTTCGATCAAACGACCGAGAAAGACGTCGTGTTGTGGACGGCAATGATTGACGGTTATGGCAAAGTTGGGGATGTTGA AAGTGCCCGAGAACTGTTCGAGGAAATGCCTGAGAGAAATGCAGTGTCGTGGAGTGCCATGATGGCTGCGTATTCCCGGG TTAGTGACTTCAAGCAAGTGCTGGCTTTGTTTGAGGAGATGCAGAACCGAGGAATGAAGCCAAATGACTCTGTTCTTGTT ACTGTCCTCACTGCGTGTGCGCATCTCGGTGCCCTCACTCAGGGACTGTGGGTGCATTCCTATGCCAAGCGGTGCAAGGT TGATTCGAATCCGATCCTGGCAACGGCTCTAGTGGACATGTATTCCAAATGCGGGTGTGTGGAGTCAGCGTTAACGGTTT TTGAGGGAATTGCTGATAAGGATGCTGGAGCATGGAATGCTATGATTTCTGGTGTTGCCTTGAGTGGTGATGTGAGGAAG TCGCTGGAGTTGTTTCATCAAATGGCTGCTCATGGGACCCAACCCACTGAGACTACCTTTGTGGCTGTCCTCACTGCTTG CACGCATGGTGGGATGGTTCATCAAGGTCTTAGGTTGTTTGAAGAAATGAGTTGTACTTATGGAGTTGAGCCGCGGGGGG AGCATTATGCGTGTGTTGTTGACCTTTTGTCTAGAGCTGGCATGGTGAAGGAGGCTGAGAAGTTTATGGAGAAGATGGGT GGACTTGTGGAGGCGGACCTTAATGTTTGGGGTGCTATTCTGAATGCTTGTAGAATTTATAAGAATGTTGATGTTGGGAA TAGAGTGTGGAAAAAAATGATTGATAAGGGCGTAGCTGACTGTGGCACTCATATTCTTACATACAATATGTATAGAGAAG CTGGGTGGGATGCAGAGGCAAAAAGAGTTAGGAGTATGGTTTCAGAAGCGGGGATGAAGAAGAAACCTGGGTGCAGCATA ATAGAGGTCGGTGATGAAGTTGAAGAGTTTCTTGCAGGTGATCATTCTCATCCACAAGCACAGGAATTATGCAAATTACT TGATTCAATTCTTATGATGGCAAATTTGGAGCACTTCTGA
Protein sequence (LotjaGi1g1v0200000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNQNNLTSLVKKCKTLTQLKQVHAHILRCRRINHIAPLLSAAAATSNFSYARSIFLHLTHRNTFIHNTMIRAYLLHAPSP APALSCYSSMLRTGITVNNYTFPPLIKASLALLSSSSSSNFTGRLVHGHVVKFGFHDDPYVVSGFIEFYCASRQLQTARL LFDQTTEKDVVLWTAMIDGYGKVGDVESARELFEEMPERNAVSWSAMMAAYSRVSDFKQVLALFEEMQNRGMKPNDSVLV TVLTACAHLGALTQGLWVHSYAKRCKVDSNPILATALVDMYSKCGCVESALTVFEGIADKDAGAWNAMISGVALSGDVRK SLELFHQMAAHGTQPTETTFVAVLTACTHGGMVHQGLRLFEEMSCTYGVEPRGEHYACVVDLLSRAGMVKEAEKFMEKMG GLVEADLNVWGAILNACRIYKNVDVGNRVWKKMIDKGVADCGTHILTYNMYREAGWDAEAKRVRSMVSEAGMKKKPGCSI IEVGDEVEEFLAGDHSHPQAQELCKLLDSILMMANLEHF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 117 | 117 | 2.8E-6 | ||
| ProSiteProfiles | 62 | 97 | 36 | 7.552 | ||
| PANTHER | 112 | 198 | 87 | 4.3E-81 | – | |
| Gene3D | 132 | 258 | 127 | 2.1E-29 | ||
| ProSiteProfiles | 138 | 168 | 31 | 5.897 | ||
| ProSiteProfiles | 169 | 199 | 31 | 11.531 | ||
| Pfam | 169 | 197 | 29 | 2.4E-7 | ||
| TIGRFAM | 171 | 199 | 29 | 8.7E-8 | ||
| Pfam | 200 | 247 | 48 | 4.2E-9 | ||
| ProSiteProfiles | 200 | 234 | 35 | 12.342 | ||
| TIGRFAM | 202 | 235 | 34 | 6.5E-8 | ||
| PANTHER | 202 | 258 | 57 | 4.3E-81 | – | |
| ProSiteProfiles | 235 | 269 | 35 | 5.13 | ||
| PANTHER | 254 | 477 | 224 | 4.3E-81 | – | |
| ProSiteProfiles | 270 | 300 | 31 | 6.971 | ||
| Gene3D | 275 | 489 | 215 | 6.7E-38 | ||
| Pfam | 275 | 295 | 21 | 0.1 | ||
| Pfam | 301 | 347 | 47 | 1.0E-7 | ||
| ProSiteProfiles | 301 | 335 | 35 | 11.137 | ||
| TIGRFAM | 305 | 336 | 32 | 4.4E-5 | ||
| ProSiteProfiles | 336 | 371 | 36 | 7.509 | ||
| ProSiteProfiles | 372 | 402 | 31 | 6.599 | ||
| Pfam | 376 | 399 | 24 | 0.057 | ||
| ProSiteProfiles | 406 | 440 | 35 | 7.596 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0200000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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