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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0202000 |
| Transcript ID | LotjaGi1g1v0202000.3 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein; TAIR: AT5G55740.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q9FM64|PP431_ARATH Pentatricopeptide repeat-containing protein At5g55740, chloroplastic; TrEMBL-Plants: tr|G7LH09|G7LH09_MEDTR Chlororespiratory reduction protein, putative; Found in the gene: LotjaGi1g1v0202000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:42861713..42866302) extracted from Lotus japonicus Gifu genome v1.2.
CCCACCTAATCTTCACCATATCCCATCCGAAACAACATGGCCGTTTAAATTATCTATTCACCACAATACCCTTCCCGCTT CTGTCCGTGTCACTCACTCACCACCACCACCACCACCACCTCCACCGCCACCTCCATGCATTGTATATCTTGTCTTCCCC TCACACCCAACACCGCCCTACAACTTCCCCATTCCAAATCTCAAACCACCGTAATCTCCCCCAACCCCACACCGAAACTC ACCCCAAACACCACACTCCACCACCACATCACCGCGCTCTGCAACACCACCGCCGCAGGACCCGACATCTACGGAGAACT CCTCCAAGGATGCGTCTACGCTAGAGACCTCGGTCTCGGCCTTCAAATCCACGCCCACGTCATAAAAAACGGTCCCTCCT TCTCCCAAAACAACTTCCTCCACACCAAGCTGCTCATCCTCTACGCCAAATGCGGCCACTCCCACGTCGCCTTCCGCCTC TTCGACAACCTACCGGAGCAGAATCTCTTCTCCTGGGCCGCCATTTTGGGCCTGCAAGCCCGAACGGGTCGTTCCCATGA AGCGCTCTCCAGCTACGTCCGGATGAAAGAAAACGGCTTCTCTCCGGACAATTTTGTCGTCCCCAACGCGCTCAAGGCCT GCGGGGCCCTCCGTTGGCTCGGGTTCGGTAAAGGGGTTCACGGCTACGTCGTGAAGATGATGGGCTTTGACGGGTGCGTT TATGTGGCGACCGGGCTCGTTGACATGTATGGGAAATGTGGGGTTTTGGAGGATGCGGAGAGGGTGTTTGATGAAATGCC TGAGAAGAATGTGGTCGCTTGGAACTCGATGATTGCGGTTTACGCGCAGAACGGAATGAACGAGGAAGCAATTAGGCTGT TTCAGGAGATGAGACTGGAGGGTGGTGTTGACCCGAATGCGGTCACTTTGTCGGGTTTCCTCTCAGCGTGTGCGAATTTG GAGGCGTTGGTGGAAGGAAGACAAGGGCATGCTCTTGCTGTTTTAATGGGGTTGGAGATGGGTAGCATTTTGGGTAGTTC CGTTGTGAACTTCTATTCCAAGGTTGGTTTGATTGAGGAGGCTGAGTTAGTTTTTAGAAACATAGTTATGAAAGATGTGG TTACGTGGAATTTGATTGTGTCTAGTTATGTGCGATTTGGGATGGTGGAGAAAGCACTTGAGATGTGTTATTTGATGAGA AAAGAAAATTTGAGGTTTGACTTCGTGACATTGTCGTCTTTATTGGCTATTGCTGCAGATACGAGAGATGCGAAACTGGG TATGAAGGCACACGGGTTTTGCATCAAGAACGACTTTGATTCTGATGCGGTTGTGTTGAGTGGAGTCGTAGATATGTATG CGAAATGTGGGAGGGTGGAATGTGCAAGAAGAGTGTTCGCTTCTGCTGAAAGGAAAGATGTTGTGTTGTGGAACACAATG CTAGCAGCTTGTGCAGAAATGGGTTTGAGCGGTGAGGCGTTAAAACTTTTCTATCAAATGCAGCTAGGGAGTGTTCCCGC AAACGTTGTTTCTTGGAACTCTGTGATATTGAGTTTTTTTAGAAATGGTCAGGTTGTGGAGGCTCTAAACATGTTTTCAG AAATGCAATCTTCAGGTGTTAAGCCTAATTTGGTCACATGGACCTCTGTGATGTCTGGTCTGGCTCGAAACAATCTTAGT TACGAGGCTGTTATGGTTTTCCGGCAAATGCAGGATGCGGGAATCAGGCCTAATAGTGTGAGCATAACTTGTGCTCTCTC AGCGTGCACAGACATGGCACTGTTAAAATACGGAAGGGCAATTCATGGGTATGTTGTGAGGCAGTACATGTCTCCATCTC TTCAAATCACAACCTCTATTGTGGACATGTATGCAAAATGTGGAAATTTGGATTGTGCAAAGTGGGTTTTCAATATCTGT TCAACAAAGGAATTGCCTGTATACAATGCAATGATATCTGCATATGCATCGTGTGGTCAAGCTAATGAAGCCCTTGCACT TTTTAAACACTTAGAGAAAGAGTGTTTAGTGCCAGATCACATGACTTTCACTAGTGTCTTGTCAGCATGCAGCCATGGAA GATTGGTGAAGGAGGGCCTAGAGGTTTTCAAAGATATGGTCTATGATTTCCAGATGAAGCCATGTGACGAACACTATGGC TGCATAGTCAAACTTCTTGCTAACGATGGCCAGATAGATGAAGCTCTGAAGATTATTTCCACAATGCCAAGCCCTCCGGA TGCACATATACTAGGATCCTTGCTTAATGCTTGTGGGCGAAATCATGAGATTGAGCTTGCGGATTACATAGCAAAGTGGT TAATGAAATTGGAGCCAAATAATTCAGGGAATTATGTGGCTCTTTCAAATGTGTATGCAACATTGGGAAAATGGGATGAA GTGTCAAATATCAGGGGCTTAATGAAAGAAAAGGGCCTGAAAAAGAGTCCTGGGTGTAGCTGGATTGAAGTTGGACAAGA ACTTCATGTTTTTATTGCTAGTGACAGGTCACATCCTGAAATAGAGAATGTTTACAATATTCTGGATTTGTTGGTATTTG AAATGCATTATGCAAAAGATAAACCATTTTTACTTCTCTAATATGTGGATTATGCAGGAAATTATGTGGATTTGAGTACC CCATTTGAGAAAAAAGGTTTGATATAACTGTGACCATGTGTTAATCTTTGTTAGTTATTTTATGAACGTAATTAAAATCC ATCTTGTCTATTGTACATTCAAGGCAATTGACGTTCCAAGTAGTAATGGTGATTTTTCCTCTGCTTGTTCTTCAGGGTCT TCTTTATGCAATAATGAAAGTTATGCAAATATCTGTAGGCAGTTGCTCTGTGGAGAGTCAAAACATTATACTTCAAAAAG CTTACAGCATAATATCATCACACACTAACTTTCAGTTCAATGAAGTCGGAAGATCACCCCTCACTCCTGAAAAATATGAC ATATCTCCTAGAGATGAAGGAGTGCTTTCATTATTTGCATCAGTAACTATTGCAGTTTCCCCCAAAACACATATTCCAAA TATAAGAGGACTTCTGCGTTTATTTATAATAGCCCTCCTCAAGGGTGTTGTTCCACTTGCACAGACCTTGGGTTCTATGA TTAACAAATTCATTTCAAAAGCCAGCGATGCAGAGAACTCCAATAATCTTACCTTGGAAGAAGCTCTGAATGTTATATTC AGCACAAAAATATGGGTTTGTAGTACTGATGTGTTGCAGGGATGTAATGGAGCAGATAATGGGAGTGAAATGGTTCTTAC TGAATAATGCCTGGGCATTGCAAATGATAGATTACTTCAAAGTTCAAACCAATGCCATTTGTGGGCTCTCATGGATTGGA AAAGGTTTGCTTCTGCGTTGTCATGAATAGATTAAAGACATCACGATGATTTTTATTGAGTGCTATCAGGCACAAAGCAA TCCCCCGATACATAGAAACAATGCAATATTACCAAAATGCCAATAAATTGTTCAACTGGAGTTTTTTCTCTTTGCCATCT CCCTTACGCCCACAGATGTCTAAACTGTTGTTTTCTACAATGTCAGATCTTTCTTGTATCGAGCTTTTGCACATATCATC TCTGATACTCCGCTGATTGTTATAGTAAGTGAAGCTAAAAAGGTTAGTTTGAGAAATTTAAACTATCAGCAATTACATAT ATTTGTCACACTTAAGAATTTCTTCTACTGAGTTGGCTTTTCTTGATCAACTACTTTTATTAATGTAAGTTTCCTTGCAA ATTTTGCAGCTCATACCAGTTCTGCTGAATTGCTTGTCCATGTTGACCGAAGATATTCAAGATAAAGATATTTTGTATGG TCTGTTGCTAGTCTTATCTGGGATATTGACTGAGAAAAATGGTAATTACTAATTACAATTGTTGTAGTATTTAATGTTTC TTATCAGAACTACTAGGGTCAAGATATGGGTCAATAACTCAGTGCGAATTTCACGTTCTCCTATAGTGATTTGATTTCTT TCCCTTTTGTTTCTCTTAATGATTTCATTGTGGGAAAGAATTTGGATCATTCGAAGGATCAATTTCAATATTAATAAGAA TTTTCACAAGGATCTTGATCATTAGCCAACGTACCTGTTGCTAGATTCTGGTGCAATATCTGGTATTTACAAATAGCCAA ATACTGATGATTTGTTCCTTGCTGATGTGCTTGGTACTTATATAGCTTCAACCTGTGTTTTCATATCGTATTACTATGTT TGTCACAATTCTGTAGTGAAGGTGATAATGATCATGTAATCTTTGGCAAGTAGAAAAAACGACCATGAATGCTGTCTTAA ATAAACTATGTTCATGCATGCAGGGCAAGAAGCTGTCACGGAGAATGCTTATATTATCATCAATTGTCTGATTAAATTTG TGGACTACCCTCGGAAAACATGTGTATCAGATTATTGAACTTCTATTTGTATATTTAGTCCTAAAATTATATAGAAGCTC TTTACCCTATTATTTGAATAATAATAAAAGTACTGATATTATATTAAATTTTACTTTTCTATTAGTTTTATCACCTAAAT ATTTTTATGTAAAATGTTCCTTCCTTCCTG
CDS sequence (LotjaGi1g1v0202000.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCATTGTATATCTTGTCTTCCCCTCACACCCAACACCGCCCTACAACTTCCCCATTCCAAATCTCAAACCACCGTAAT CTCCCCCAACCCCACACCGAAACTCACCCCAAACACCACACTCCACCACCACATCACCGCGCTCTGCAACACCACCGCCG CAGGACCCGACATCTACGGAGAACTCCTCCAAGGATGCGTCTACGCTAGAGACCTCGGTCTCGGCCTTCAAATCCACGCC CACGTCATAAAAAACGGTCCCTCCTTCTCCCAAAACAACTTCCTCCACACCAAGCTGCTCATCCTCTACGCCAAATGCGG CCACTCCCACGTCGCCTTCCGCCTCTTCGACAACCTACCGGAGCAGAATCTCTTCTCCTGGGCCGCCATTTTGGGCCTGC AAGCCCGAACGGGTCGTTCCCATGAAGCGCTCTCCAGCTACGTCCGGATGAAAGAAAACGGCTTCTCTCCGGACAATTTT GTCGTCCCCAACGCGCTCAAGGCCTGCGGGGCCCTCCGTTGGCTCGGGTTCGGTAAAGGGGTTCACGGCTACGTCGTGAA GATGATGGGCTTTGACGGGTGCGTTTATGTGGCGACCGGGCTCGTTGACATGTATGGGAAATGTGGGGTTTTGGAGGATG CGGAGAGGGTGTTTGATGAAATGCCTGAGAAGAATGTGGTCGCTTGGAACTCGATGATTGCGGTTTACGCGCAGAACGGA ATGAACGAGGAAGCAATTAGGCTGTTTCAGGAGATGAGACTGGAGGGTGGTGTTGACCCGAATGCGGTCACTTTGTCGGG TTTCCTCTCAGCGTGTGCGAATTTGGAGGCGTTGGTGGAAGGAAGACAAGGGCATGCTCTTGCTGTTTTAATGGGGTTGG AGATGGGTAGCATTTTGGGTAGTTCCGTTGTGAACTTCTATTCCAAGGTTGGTTTGATTGAGGAGGCTGAGTTAGTTTTT AGAAACATAGTTATGAAAGATGTGGTTACGTGGAATTTGATTGTGTCTAGTTATGTGCGATTTGGGATGGTGGAGAAAGC ACTTGAGATGTGTTATTTGATGAGAAAAGAAAATTTGAGGTTTGACTTCGTGACATTGTCGTCTTTATTGGCTATTGCTG CAGATACGAGAGATGCGAAACTGGGTATGAAGGCACACGGGTTTTGCATCAAGAACGACTTTGATTCTGATGCGGTTGTG TTGAGTGGAGTCGTAGATATGTATGCGAAATGTGGGAGGGTGGAATGTGCAAGAAGAGTGTTCGCTTCTGCTGAAAGGAA AGATGTTGTGTTGTGGAACACAATGCTAGCAGCTTGTGCAGAAATGGGTTTGAGCGGTGAGGCGTTAAAACTTTTCTATC AAATGCAGCTAGGGAGTGTTCCCGCAAACGTTGTTTCTTGGAACTCTGTGATATTGAGTTTTTTTAGAAATGGTCAGGTT GTGGAGGCTCTAAACATGTTTTCAGAAATGCAATCTTCAGGTGTTAAGCCTAATTTGGTCACATGGACCTCTGTGATGTC TGGTCTGGCTCGAAACAATCTTAGTTACGAGGCTGTTATGGTTTTCCGGCAAATGCAGGATGCGGGAATCAGGCCTAATA GTGTGAGCATAACTTGTGCTCTCTCAGCGTGCACAGACATGGCACTGTTAAAATACGGAAGGGCAATTCATGGGTATGTT GTGAGGCAGTACATGTCTCCATCTCTTCAAATCACAACCTCTATTGTGGACATGTATGCAAAATGTGGAAATTTGGATTG TGCAAAGTGGGTTTTCAATATCTGTTCAACAAAGGAATTGCCTGTATACAATGCAATGATATCTGCATATGCATCGTGTG GTCAAGCTAATGAAGCCCTTGCACTTTTTAAACACTTAGAGAAAGAGTGTTTAGTGCCAGATCACATGACTTTCACTAGT GTCTTGTCAGCATGCAGCCATGGAAGATTGGTGAAGGAGGGCCTAGAGGTTTTCAAAGATATGGTCTATGATTTCCAGAT GAAGCCATGTGACGAACACTATGGCTGCATAGTCAAACTTCTTGCTAACGATGGCCAGATAGATGAAGCTCTGAAGATTA TTTCCACAATGCCAAGCCCTCCGGATGCACATATACTAGGATCCTTGCTTAATGCTTGTGGGCGAAATCATGAGATTGAG CTTGCGGATTACATAGCAAAGTGGTTAATGAAATTGGAGCCAAATAATTCAGGGAATTATGTGGCTCTTTCAAATGTGTA TGCAACATTGGGAAAATGGGATGAAGTGTCAAATATCAGGGGCTTAATGAAAGAAAAGGGCCTGAAAAAGAGTCCTGGGT GTAGCTGGATTGAAGTTGGACAAGAACTTCATGTTTTTATTGCTAGTGACAGGTCACATCCTGAAATAGAGAATGTTTAC AATATTCTGGATTTGTTGGTATTTGAAATGCATTATGCAAAAGATAAACCATTTTTACTTCTCTAA
Protein sequence (LotjaGi1g1v0202000.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MHCISCLPLTPNTALQLPHSKSQTTVISPNPTPKLTPNTTLHHHITALCNTTAAGPDIYGELLQGCVYARDLGLGLQIHA HVIKNGPSFSQNNFLHTKLLILYAKCGHSHVAFRLFDNLPEQNLFSWAAILGLQARTGRSHEALSSYVRMKENGFSPDNF VVPNALKACGALRWLGFGKGVHGYVVKMMGFDGCVYVATGLVDMYGKCGVLEDAERVFDEMPEKNVVAWNSMIAVYAQNG MNEEAIRLFQEMRLEGGVDPNAVTLSGFLSACANLEALVEGRQGHALAVLMGLEMGSILGSSVVNFYSKVGLIEEAELVF RNIVMKDVVTWNLIVSSYVRFGMVEKALEMCYLMRKENLRFDFVTLSSLLAIAADTRDAKLGMKAHGFCIKNDFDSDAVV LSGVVDMYAKCGRVECARRVFASAERKDVVLWNTMLAACAEMGLSGEALKLFYQMQLGSVPANVVSWNSVILSFFRNGQV VEALNMFSEMQSSGVKPNLVTWTSVMSGLARNNLSYEAVMVFRQMQDAGIRPNSVSITCALSACTDMALLKYGRAIHGYV VRQYMSPSLQITTSIVDMYAKCGNLDCAKWVFNICSTKELPVYNAMISAYASCGQANEALALFKHLEKECLVPDHMTFTS VLSACSHGRLVKEGLEVFKDMVYDFQMKPCDEHYGCIVKLLANDGQIDEALKIISTMPSPPDAHILGSLLNACGRNHEIE LADYIAKWLMKLEPNNSGNYVALSNVYATLGKWDEVSNIRGLMKEKGLKKSPGCSWIEVGQELHVFIASDRSHPEIENVY NILDLLVFEMHYAKDKPFLLL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 47 | 185 | 139 | 1.4E-13 | ||
| PANTHER | 50 | 170 | 121 | 2.9E-136 | – | |
| ProSiteProfiles | 55 | 89 | 35 | 5.481 | ||
| ProSiteProfiles | 92 | 122 | 31 | 6.292 | ||
| ProSiteProfiles | 123 | 157 | 35 | 9.909 | ||
| PANTHER | 164 | 283 | 120 | 2.9E-136 | – | |
| Gene3D | 186 | 285 | 100 | 9.8E-23 | ||
| ProSiteProfiles | 194 | 224 | 31 | 8.144 | ||
| TIGRFAM | 199 | 227 | 29 | 2.4E-4 | ||
| Pfam | 224 | 273 | 50 | 1.5E-12 | ||
| ProSiteProfiles | 225 | 259 | 35 | 11.268 | ||
| TIGRFAM | 227 | 261 | 35 | 2.1E-6 | ||
| PANTHER | 281 | 374 | 94 | 2.9E-136 | – | |
| Gene3D | 286 | 382 | 97 | 7.4E-13 | ||
| ProSiteProfiles | 296 | 326 | 31 | 5.678 | ||
| Pfam | 302 | 326 | 25 | 1.2 | ||
| SUPERFAMILY | 305 | 756 | 452 | 8.13E-5 | ||
| ProSiteProfiles | 327 | 361 | 35 | 10.611 | ||
| TIGRFAM | 329 | 361 | 33 | 6.1E-6 | ||
| Pfam | 329 | 358 | 30 | 7.2E-6 | ||
| PANTHER | 365 | 461 | 97 | 2.9E-136 | – | |
| Gene3D | 383 | 459 | 77 | 3.6E-11 | ||
| ProSiteProfiles | 397 | 427 | 31 | 7.443 | ||
| ProSiteProfiles | 428 | 462 | 35 | 9.887 | ||
| Pfam | 430 | 456 | 27 | 1.2E-4 | ||
| TIGRFAM | 430 | 457 | 28 | 2.9E-4 | ||
| Gene3D | 460 | 552 | 93 | 2.6E-26 | ||
| Pfam | 463 | 511 | 49 | 4.2E-14 | ||
| ProSiteProfiles | 463 | 497 | 35 | 12.847 | ||
| PANTHER | 464 | 532 | 69 | 2.9E-136 | – | |
| TIGRFAM | 465 | 498 | 34 | 1.1E-8 | ||
| ProSiteProfiles | 498 | 532 | 35 | 11.729 | ||
| PANTHER | 500 | 555 | 56 | 2.9E-136 | – | |
| TIGRFAM | 500 | 533 | 34 | 1.1E-7 | ||
| PANTHER | 552 | 766 | 215 | 2.9E-136 | – | |
| Gene3D | 553 | 793 | 241 | 6.9E-35 | ||
| ProSiteProfiles | 568 | 598 | 31 | 5.393 | ||
| ProSiteProfiles | 599 | 633 | 35 | 10.643 | ||
| Pfam | 602 | 646 | 45 | 1.6E-8 | ||
| TIGRFAM | 602 | 634 | 33 | 4.8E-6 | ||
| ProSiteProfiles | 634 | 669 | 36 | 8.002 | ||
| TIGRFAM | 637 | 662 | 26 | 0.0032 | ||
| ProSiteProfiles | 670 | 700 | 31 | 6.182 | ||
| ProSiteProfiles | 702 | 732 | 31 | 5.316 | ||
| ProSiteProfiles | 736 | 770 | 35 | 8.111 | ||
| Pfam | 740 | 768 | 29 | 1.3 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0202000.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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