Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0208900 |
| Transcript ID | LotjaGi1g1v0208900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein; TAIR: AT1G59720.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q0WQW5|PPR85_ARATH Pentatricopeptide repeat-containing protein At1g59720, chloroplastic/mitochondrial; TrEMBL-Plants: tr|A0A0L9TC52|A0A0L9TC52_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0208900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:45825011..45827319) extracted from Lotus japonicus Gifu genome v1.2.
TCCGTCGTCACTGCTTCCTCGGTTGCTCCTTATCCGCTTCACATGTGATGATTAACATGAATACAGGGTGTGTCTTCTTC ACAGTTGATCCCATCCATTATTCTGAATAAATTCCTCATATAATGACTTTGGCCATTGCAGCAGCAACCCCACCTCCTCT AACCAATAACCATAACAACAGCCTTATCCACTTGTTGAATAACAACTCCACTGGCATCATCACCATGTCTCACCTTAAGC AAATACACGCCCAAACGCTACGCACCATTGACACCACCAACCATCCACAAGCTCTCTTCCTCTACAGCAGAATTCTCCAC TATTACTCCTCTTTGGCTGATCTTAACTATGCTACTCGGCTATTTCACCACTTTGGGAAACCCAATTCCTTTATGTGGAA CACTCTCATACGAGCCTACGCGCGTAGCGCCAACCACAAACACCAGGCCATTGAGCTTTACAAAGCTATGATGTTGATGA TGGAAGAAGAAGTTGTACCTGATCACTACACATTCCCCTTTGTTCTGAAAGCGTGTGCTCACACTTTTTCTCTGTGTGAA GGAAAACAGGTTCATGCTCAGCTTCTGAAACTTGGGTATGAGTCAGATACTCGTATTTGCAACAGTTTGATTCATTTTTA TGCCACGTGCGGGTGTTTGGACATGGCACTGAAAATATTTCAGAACATGTCTGAAAAGAGTGAGGTTTCGTGGAATGTCA TGGTTGATTCTTATGTAAGGGCTGGAGAGTTTGACACTGCCCTGAAGGTGTTTGGTGAAATGCTCAAGTTACATGACCCT GATGGTTATACAATGCAGAGTGTTATCAGTGCTTGTGCTGGTTTGGGTGCTCTGTCTTTGGGTATGTGGGCTCACGCTTA TGTTATGAAAAAGTGTGACAAGAATGTGGCTGCTGATGTTTTAGTCAACACTTGCTTGGTGGATATGTATTGCAAATGTG GATCATTGGAAATTGCTCAGCAGGTGTTCGAAAGAATGCCATATAGAGATGTAAACTCATGGAATTCAATAATCTTGGGA TTTTCCATGCACGGGAAGGCTGAGGCAGCTTTGGATTATTTTTTCCGGATGGTGAAGATAGAGAAATTTGTGCCGAATTC TATCACTTTTGTTGGGGTCTTGAGTGCATGTAATCACAGGGGCATGGTTAATGAGGGGCTTATGTATTTTGACATGATGA CTAAAGAGTACAATGTTGAGCCAAGATTAGAGCATTATGGGTGTCTTGTTGATCTTTTTGCTCGAGCTGGGCGCATCCAA GAGGCTCTGAACTTGGTTTCAGAAATGCCCATCAAACCAGATGCTGTAATCTGGAGGAGTCTTTTGGATGCTTGTTGCAA GCAAGATGCAAGTGTTGAGCTAGGTGAAGAAATGGCAAAACAAGTTTTTGAGATAGAGGGGAGTGTTTGTAGCGGTGCTT ACGTGCTTTTGTCAAAACTCTATGCATCAGCTAGCAGGTGGAATGAAGTTGGTTTACTTAGGAAGCTAATGAGTGATAAG GGTGTGACTAAAAAACCTGGCTGTAGTTTAATAGAGATAGATGGAGTTGCTCATGAATTTTTTGCTGGGGACACAACTCA TCCAAAAAGTGAAGATATATACAAGTTTTTGAATGAAATTGATGAGAAGCTAGAATCAATGGGGTATTTACCTGACTACT CAGGGGCACATTTGGTTGATGAGACTATAGATGGAAAGAAGAGCACTCTGAGGTTGCACAGTGAGAGATTGGCCATAGCT TTTGGGCTCTTGAACTCAAGACCGGGCATGCCAATAAGAGTATTTAAGAATCTAAGAGTGTGTAGTGATTGCCATAAGGT TACTAAATTAATATCCTCAATTTACAATGTGGAGATAATTGTAAGAGATCGTGCTCGATTCCATCACTTTAAAGATGGAA CCTGTTCTTGTATGGATTATTGGTGATAGATGCTCATGCAATGGGTCATGAAATGTATAGTGGAAAATCTCTGGAGAACT TCATCGAAATGATATTCTGGGTGCAGTTGACCAATGGAAATCCATGTTTATGTATTACTATCTATTCTCTTTGCAAATCC TTGGATAAAAAGGAAGACATACTGCTTACTGTAGCAGACTAATGTTTCTACACCATGAGTCCTTGGATCTATAACTCATT TCCAATTACAATATTTCTGTAAATAGATTGTTAAAGATAATGAACAATTTTTCTTGCAGTTGCAAAAAAATTGTATCAAT TTATTATCATCATTTTAGGAAATCATCCTTTCCTTGCAGACTACCAAGTGACAGATGCATTACTCAAAC
CDS sequence (LotjaGi1g1v0208900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACTTTGGCCATTGCAGCAGCAACCCCACCTCCTCTAACCAATAACCATAACAACAGCCTTATCCACTTGTTGAATAA CAACTCCACTGGCATCATCACCATGTCTCACCTTAAGCAAATACACGCCCAAACGCTACGCACCATTGACACCACCAACC ATCCACAAGCTCTCTTCCTCTACAGCAGAATTCTCCACTATTACTCCTCTTTGGCTGATCTTAACTATGCTACTCGGCTA TTTCACCACTTTGGGAAACCCAATTCCTTTATGTGGAACACTCTCATACGAGCCTACGCGCGTAGCGCCAACCACAAACA CCAGGCCATTGAGCTTTACAAAGCTATGATGTTGATGATGGAAGAAGAAGTTGTACCTGATCACTACACATTCCCCTTTG TTCTGAAAGCGTGTGCTCACACTTTTTCTCTGTGTGAAGGAAAACAGGTTCATGCTCAGCTTCTGAAACTTGGGTATGAG TCAGATACTCGTATTTGCAACAGTTTGATTCATTTTTATGCCACGTGCGGGTGTTTGGACATGGCACTGAAAATATTTCA GAACATGTCTGAAAAGAGTGAGGTTTCGTGGAATGTCATGGTTGATTCTTATGTAAGGGCTGGAGAGTTTGACACTGCCC TGAAGGTGTTTGGTGAAATGCTCAAGTTACATGACCCTGATGGTTATACAATGCAGAGTGTTATCAGTGCTTGTGCTGGT TTGGGTGCTCTGTCTTTGGGTATGTGGGCTCACGCTTATGTTATGAAAAAGTGTGACAAGAATGTGGCTGCTGATGTTTT AGTCAACACTTGCTTGGTGGATATGTATTGCAAATGTGGATCATTGGAAATTGCTCAGCAGGTGTTCGAAAGAATGCCAT ATAGAGATGTAAACTCATGGAATTCAATAATCTTGGGATTTTCCATGCACGGGAAGGCTGAGGCAGCTTTGGATTATTTT TTCCGGATGGTGAAGATAGAGAAATTTGTGCCGAATTCTATCACTTTTGTTGGGGTCTTGAGTGCATGTAATCACAGGGG CATGGTTAATGAGGGGCTTATGTATTTTGACATGATGACTAAAGAGTACAATGTTGAGCCAAGATTAGAGCATTATGGGT GTCTTGTTGATCTTTTTGCTCGAGCTGGGCGCATCCAAGAGGCTCTGAACTTGGTTTCAGAAATGCCCATCAAACCAGAT GCTGTAATCTGGAGGAGTCTTTTGGATGCTTGTTGCAAGCAAGATGCAAGTGTTGAGCTAGGTGAAGAAATGGCAAAACA AGTTTTTGAGATAGAGGGGAGTGTTTGTAGCGGTGCTTACGTGCTTTTGTCAAAACTCTATGCATCAGCTAGCAGGTGGA ATGAAGTTGGTTTACTTAGGAAGCTAATGAGTGATAAGGGTGTGACTAAAAAACCTGGCTGTAGTTTAATAGAGATAGAT GGAGTTGCTCATGAATTTTTTGCTGGGGACACAACTCATCCAAAAAGTGAAGATATATACAAGTTTTTGAATGAAATTGA TGAGAAGCTAGAATCAATGGGGTATTTACCTGACTACTCAGGGGCACATTTGGTTGATGAGACTATAGATGGAAAGAAGA GCACTCTGAGGTTGCACAGTGAGAGATTGGCCATAGCTTTTGGGCTCTTGAACTCAAGACCGGGCATGCCAATAAGAGTA TTTAAGAATCTAAGAGTGTGTAGTGATTGCCATAAGGTTACTAAATTAATATCCTCAATTTACAATGTGGAGATAATTGT AAGAGATCGTGCTCGATTCCATCACTTTAAAGATGGAACCTGTTCTTGTATGGATTATTGGTGA
Protein sequence (LotjaGi1g1v0208900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTLAIAAATPPPLTNNHNNSLIHLLNNNSTGIITMSHLKQIHAQTLRTIDTTNHPQALFLYSRILHYYSSLADLNYATRL FHHFGKPNSFMWNTLIRAYARSANHKHQAIELYKAMMLMMEEEVVPDHYTFPFVLKACAHTFSLCEGKQVHAQLLKLGYE SDTRICNSLIHFYATCGCLDMALKIFQNMSEKSEVSWNVMVDSYVRAGEFDTALKVFGEMLKLHDPDGYTMQSVISACAG LGALSLGMWAHAYVMKKCDKNVAADVLVNTCLVDMYCKCGSLEIAQQVFERMPYRDVNSWNSIILGFSMHGKAEAALDYF FRMVKIEKFVPNSITFVGVLSACNHRGMVNEGLMYFDMMTKEYNVEPRLEHYGCLVDLFARAGRIQEALNLVSEMPIKPD AVIWRSLLDACCKQDASVELGEEMAKQVFEIEGSVCSGAYVLLSKLYASASRWNEVGLLRKLMSDKGVTKKPGCSLIEID GVAHEFFAGDTTHPKSEDIYKFLNEIDEKLESMGYLPDYSGAHLVDETIDGKKSTLRLHSERLAIAFGLLNSRPGMPIRV FKNLRVCSDCHKVTKLISSIYNVEIIVRDRARFHHFKDGTCSCMDYW
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 9 | 150 | 142 | 1.6E-11 | ||
| PANTHER | 35 | 141 | 107 | 7.2E-89 | – | |
| ProSiteProfiles | 88 | 126 | 39 | 8.769 | ||
| Pfam | 90 | 102 | 13 | 0.8 | ||
| ProSiteProfiles | 127 | 161 | 35 | 6.347 | ||
| SUPERFAMILY | 143 | 325 | 183 | 8.54E-6 | ||
| PANTHER | 145 | 247 | 103 | 7.2E-89 | – | |
| Gene3D | 151 | 250 | 100 | 3.2E-20 | ||
| ProSiteProfiles | 162 | 192 | 31 | 8.934 | ||
| TIGRFAM | 165 | 193 | 29 | 5.7E-4 | ||
| Pfam | 166 | 192 | 27 | 0.0018 | ||
| Pfam | 193 | 239 | 47 | 1.2E-7 | ||
| ProSiteProfiles | 193 | 223 | 31 | 10.676 | ||
| TIGRFAM | 195 | 222 | 28 | 1.1E-7 | ||
| PANTHER | 244 | 463 | 220 | 7.2E-89 | – | |
| ProSiteProfiles | 265 | 299 | 35 | 9.175 | ||
| Gene3D | 268 | 480 | 213 | 1.2E-39 | ||
| Pfam | 270 | 295 | 26 | 0.0043 | ||
| Pfam | 299 | 325 | 27 | 4.2E-4 | ||
| TIGRFAM | 299 | 332 | 34 | 6.8E-4 | ||
| ProSiteProfiles | 300 | 331 | 32 | 5.612 | ||
| ProSiteProfiles | 332 | 367 | 36 | 7.092 | ||
| Pfam | 335 | 361 | 27 | 0.69 | ||
| ProSiteProfiles | 368 | 398 | 31 | 7.651 | ||
| Pfam | 371 | 395 | 25 | 0.0097 | ||
| ProSiteProfiles | 400 | 435 | 36 | 6.325 | ||
| ProSiteProfiles | 436 | 470 | 35 | 5.733 | ||
| Pfam | 472 | 597 | 126 | 3.1E-34 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of LotjaGi1g1v0208900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…