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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0210800 |
| Transcript ID | LotjaGi1g1v0210800.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing family protein; TAIR: AT1G52640.1 Pentatricopeptide repeat (PPR) superfamily protein; Swiss-Prot: sp|Q9SSR6|PPR78_ARATH Pentatricopeptide repeat-containing protein At1g52640, mitochondrial; TrEMBL-Plants: tr|I1LG12|I1LG12_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0210800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:46315436..46318903) extracted from Lotus japonicus Gifu genome v1.2.
CCGCGACCATGATACATTCCCATTTTTCCTTTCAAACGCAACGTGACAAGGCTGCGAGAAACCCCAACGTCCGCGACCAC CGGCCACCCTCCCCGACGATACCATCGCCGCTGCTTCGAGCTCTCTCGACTCGAGCACTTTGTTCCCTGCTGCCACACCA CCGCCGGCGATGCTCCACCCTCTCTCGACTCGAATCCGAACGCTTTGTGCCCTACCGCAACCACGGTTATGTCTCAGGTT CTCTTCGAATGCTTTCTGCCCTGATTTTTTTTCCTGTTATGATCTGCCCATTTTCACTGGTTAATGCTTGATTAGTGATA GTCTCTTGTGTTTTCTATCAGTGAAGTAGTTTTCCTATTTTGATTTCCCTTTTTCGTACTTGCTTTCGATTTGCATATGT GAGAGTGTGGCTTTCGATTTTTGTTAGTTGGTATGTTGAATGATTAAGAGTGTTTATGAGGTTAGGGAGTTGAAGGATAT CATATTTCACATATTGCAGTGCATATTCATGTGCATTTTAGTTGAAAAATGTGTGGCTCTGTATTGCATTGCATAAATGG TTTAAGGATGTTTTGCTCTGTATTGCTGTTGCATTGCATATTTTCGTACAAATGGAAAAACAGGAACATGATAGCAAGTT GCCAAGCTTGGCTGCTACAATGTAAATTACTTTAATTCTTCCTAGGGTCTGTTCAACTTTTGAAAAGTATTGCTTTAATG CTTCTTGCCTGAAGATACTGCTGATTTGGTAATGTACTTGGTTACAACCTAAGTGTTAAGTGTTGTTTTGTTTGTTTGAA CTTTTATGTGTAATTTTGAATGTTACAAATCTATATATTGTGTGTAATTGTCATTACATATATGCATATTAATATAATTT AATTATCGCTAGTTCAACCGCAGTTCCATCACAGTCCGACCATTGAATCTTGAATCGGTGACTTGACCAGTTCAATGACT AGTCCAGTTTTATAAACATTGAAAAATATGCGTGCCCCCAATTTTTTTTTCTCAGTTTTATTTGTTATCTTAATTGTATT GTTGGCTGCTTAAGAAAAAAAAACAGAAGTTTAAAAGTATAGCTCTTACTTGTCTGGGGCTGGGCTTGTATAATAGGTTC TTGGTATTTTGTAGATGATTAGAACCGTAGAAGCTAAAGTTATATAAAATCACAACCGTTTCCATGACTTTATTTATGTT GCGGCTTAATTTATAGTCTTTAGTATTACACTATTATGCTACTTTTTGTGGGATCTTATTTATATTCTTCAAGTAATTAA TATTAAAATCCATCCAGATGCTGCTAAGTGCCATATGTCTCTGGCATTTCTGTTTTAGGTGTTGAATATAGTTTAACACT GACTTGTTCTGTGATAAATGTTTCTGCCATAGTTACAATAAAATTAAATGTGTTTTACTTTGATGTCTACACAGGGAAGA ATACAATTGGAAAATGTTGGACTGAAGTTGATTTAACCAAGTGCTGATTCCCTGTGGTTTGTCTTATCACAATGTCCAAA ATGGCTTTCCGGTCACTCTTCTCTAGGTATAAAAACTTAACCTCTGTGGTTTGTCCTCTTTTCCAACACAAGCAAAACTG CCATCACTTTCACTCTTTGCCAACCCCACAAGTGTTTAACCCATTATTACCAGACCTTGTGAGTGAGATTTCTCGTGTAG TCAGTGATCATCGACACCCTCACCATGATCTAGAACTCTCTCTCAATCAATTTTCAGCACAAATTTCCTCTGATTTAGTT GAGCAAGTCTTGAAAAGGTGTAAGAATCTCGGCTTCTCAGCCCACAGATTCTTCCTTTGGGCTAAATCAATTCCAGGTTT TCAGCACAGTGTTGAAAGTTTCCACATTTTGGTAGAAATCTTAGGAAGTTGTAAACAATTTGCCATACTCTGGGATTTTC TCACAGAAATGAGAGAATCTTCTTGTTGTGAAATCAACAGTGATATTTTCTGGCTCATTTTCAAGGCCTATAGCCGGGCT AATTTACCAGATGGCGCAATCCGGTCTTTCTTGAGAATGGATGAATTTGGAATTAAGCCGACTATTCATGATTTTGATAT GCTTTTGTACTTTTTATGCAAAAGGAAGCACGTCAAGCAGGCTCAGCAATTTTTTGATCAAGCTAAGAGTCATTTCTTGT TAACTGCTAAAACTTACAGCATTTTGATAAGTGGATGGGGTAAGATTGGTGATTCTGGGAAGGCGCGTGAGCTGTTTCAA GCAATGCTTGACCAAGGATGTCCAGTGGATTTGCTTGCATATAATAATTTCTTAGACGCACTCTGCAAAGGAGGTTGTGT GGATGAAGCTACAAATATTTTTCATGATATGTTGTCAAAAAGAGTTGAGCCAGATGCTTTTACTTACTCAATATTCATTC ACACATATTGTGACGCAAATGATATACATTCAGCTTTCAGGGTTCTTGATAAAATGAGAAGATGTAACCTTTTGCCAAAT GTGTTTACATACAATTGTATTATAAAGCGACTTTGTAAGAATGATAAAGTGGAAGAAGCTTATGAATTGTTGGATGAAAT GATTTTAAGAGGAGTAAAACCAGACACTTGGAGTTATAATGCAATACAAGCTCACCATTGTGATCATTGTGAGGTCAGTA GGGCTCTAAGGTTAATGTCTAGAATGGAAAAGGATAACTGTTTTCCTGATCGACATACATATAACATGGTGCTCAAATTG CTGATTAGGATAGGAAGGTTTGATAAGGCAACTGAAGTTTGGGAGAACATGGGGCATACGAATTTTTATCCTTCTGTCTC AACATATTCTGTCATGATTCATGGTCTCTGTAAGAAGAAGGGAAAGCTAGAGGAGGCATGTAAGTACTTTGAGATGATGA TTGATGAAGGAATACCGCCTTATGTTACTACAGTTGAAATGCTAAGGAATCGGCTCTTGGGTTTAGGGCTTTTGGATCAC ATTGACATACTTGCTGATAAGATGAGGCAGGGTACTTCATGTTCAATCCATGAATTGGCAAATATTATGAGTGGTGTTAG AGCAGCTCATAAGGCTTCAAGGCGTGATGAGACTGATATAGAAAGTGACTGAAGAAGTGGCCATAGAAAATTTAAGGCAT GGAAAATTGTTATTTTGAAAAATGCTTTATGCTATTTTAACAAGTACGTGGAAGCACCTATTTTATTACAGCAGAGCGCA CCATGAACATTCTATTTCTTTGAGGGTAATAGTTAACTGATGTGTTTAAAGTTACACTGCAGAATATAACAAATTCTTCT TATACCATGCAGATATTGGTGTATGTGTATCAAGTATCAGTGTACTAATAATGAATATCAATAATTTATTTATTTGTATT CATATTTTATCATCTTTGTGGCATTACTTTGCTGTCATCTCTCATCCTCTATCTAAGGTTATTACTTCTTATATTTACAG CATGCACACATAATCTTTCTTTATTGTT
CDS sequence (LotjaGi1g1v0210800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCCAAAATGGCTTTCCGGTCACTCTTCTCTAGGTATAAAAACTTAACCTCTGTGGTTTGTCCTCTTTTCCAACACAA GCAAAACTGCCATCACTTTCACTCTTTGCCAACCCCACAAGTGTTTAACCCATTATTACCAGACCTTGTGAGTGAGATTT CTCGTGTAGTCAGTGATCATCGACACCCTCACCATGATCTAGAACTCTCTCTCAATCAATTTTCAGCACAAATTTCCTCT GATTTAGTTGAGCAAGTCTTGAAAAGGTGTAAGAATCTCGGCTTCTCAGCCCACAGATTCTTCCTTTGGGCTAAATCAAT TCCAGGTTTTCAGCACAGTGTTGAAAGTTTCCACATTTTGGTAGAAATCTTAGGAAGTTGTAAACAATTTGCCATACTCT GGGATTTTCTCACAGAAATGAGAGAATCTTCTTGTTGTGAAATCAACAGTGATATTTTCTGGCTCATTTTCAAGGCCTAT AGCCGGGCTAATTTACCAGATGGCGCAATCCGGTCTTTCTTGAGAATGGATGAATTTGGAATTAAGCCGACTATTCATGA TTTTGATATGCTTTTGTACTTTTTATGCAAAAGGAAGCACGTCAAGCAGGCTCAGCAATTTTTTGATCAAGCTAAGAGTC ATTTCTTGTTAACTGCTAAAACTTACAGCATTTTGATAAGTGGATGGGGTAAGATTGGTGATTCTGGGAAGGCGCGTGAG CTGTTTCAAGCAATGCTTGACCAAGGATGTCCAGTGGATTTGCTTGCATATAATAATTTCTTAGACGCACTCTGCAAAGG AGGTTGTGTGGATGAAGCTACAAATATTTTTCATGATATGTTGTCAAAAAGAGTTGAGCCAGATGCTTTTACTTACTCAA TATTCATTCACACATATTGTGACGCAAATGATATACATTCAGCTTTCAGGGTTCTTGATAAAATGAGAAGATGTAACCTT TTGCCAAATGTGTTTACATACAATTGTATTATAAAGCGACTTTGTAAGAATGATAAAGTGGAAGAAGCTTATGAATTGTT GGATGAAATGATTTTAAGAGGAGTAAAACCAGACACTTGGAGTTATAATGCAATACAAGCTCACCATTGTGATCATTGTG AGGTCAGTAGGGCTCTAAGGTTAATGTCTAGAATGGAAAAGGATAACTGTTTTCCTGATCGACATACATATAACATGGTG CTCAAATTGCTGATTAGGATAGGAAGGTTTGATAAGGCAACTGAAGTTTGGGAGAACATGGGGCATACGAATTTTTATCC TTCTGTCTCAACATATTCTGTCATGATTCATGGTCTCTGTAAGAAGAAGGGAAAGCTAGAGGAGGCATGTAAGTACTTTG AGATGATGATTGATGAAGGAATACCGCCTTATGTTACTACAGTTGAAATGCTAAGGAATCGGCTCTTGGGTTTAGGGCTT TTGGATCACATTGACATACTTGCTGATAAGATGAGGCAGGGTACTTCATGTTCAATCCATGAATTGGCAAATATTATGAG TGGTGTTAGAGCAGCTCATAAGGCTTCAAGGCGTGATGAGACTGATATAGAAAGTGACTGA
Protein sequence (LotjaGi1g1v0210800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSKMAFRSLFSRYKNLTSVVCPLFQHKQNCHHFHSLPTPQVFNPLLPDLVSEISRVVSDHRHPHHDLELSLNQFSAQISS DLVEQVLKRCKNLGFSAHRFFLWAKSIPGFQHSVESFHILVEILGSCKQFAILWDFLTEMRESSCCEINSDIFWLIFKAY SRANLPDGAIRSFLRMDEFGIKPTIHDFDMLLYFLCKRKHVKQAQQFFDQAKSHFLLTAKTYSILISGWGKIGDSGKARE LFQAMLDQGCPVDLLAYNNFLDALCKGGCVDEATNIFHDMLSKRVEPDAFTYSIFIHTYCDANDIHSAFRVLDKMRRCNL LPNVFTYNCIIKRLCKNDKVEEAYELLDEMILRGVKPDTWSYNAIQAHHCDHCEVSRALRLMSRMEKDNCFPDRHTYNMV LKLLIRIGRFDKATEVWENMGHTNFYPSVSTYSVMIHGLCKKKGKLEEACKYFEMMIDEGIPPYVTTVEMLRNRLLGLGL LDHIDILADKMRQGTSCSIHELANIMSGVRAAHKASRRDETDIESD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 50 | 202 | 153 | 5.3E-14 | ||
| PANTHER | 97 | 350 | 254 | 4.3E-93 | – | |
| ProSiteProfiles | 113 | 147 | 35 | 6.533 | ||
| ProSiteProfiles | 149 | 183 | 35 | 8.912 | ||
| Pfam | 157 | 181 | 25 | 1.4 | ||
| SUPERFAMILY | 177 | 418 | 242 | 8.72E-5 | ||
| ProSiteProfiles | 184 | 214 | 31 | 6.281 | ||
| Gene3D | 212 | 321 | 110 | 1.8E-27 | ||
| ProSiteProfiles | 218 | 252 | 35 | 10.611 | ||
| TIGRFAM | 221 | 253 | 33 | 4.2E-7 | ||
| Pfam | 221 | 250 | 30 | 6.4E-5 | ||
| ProSiteProfiles | 253 | 287 | 35 | 11.805 | ||
| Pfam | 254 | 301 | 48 | 1.6E-13 | ||
| TIGRFAM | 256 | 289 | 34 | 8.5E-8 | ||
| PANTHER | 283 | 496 | 214 | 4.3E-93 | – | |
| ProSiteProfiles | 288 | 322 | 35 | 11.433 | ||
| TIGRFAM | 290 | 324 | 35 | 3.1E-7 | ||
| Pfam | 322 | 364 | 43 | 8.2E-15 | ||
| ProSiteProfiles | 323 | 357 | 35 | 13.625 | ||
| TIGRFAM | 325 | 359 | 35 | 1.0E-10 | ||
| Gene3D | 331 | 525 | 195 | 2.0E-38 | ||
| ProSiteProfiles | 358 | 392 | 35 | 9.065 | ||
| Pfam | 392 | 441 | 50 | 2.4E-13 | ||
| ProSiteProfiles | 393 | 427 | 35 | 10.939 | ||
| TIGRFAM | 395 | 428 | 34 | 1.4E-5 | ||
| ProSiteProfiles | 428 | 463 | 36 | 13.208 | ||
| TIGRFAM | 431 | 463 | 33 | 2.5E-6 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0210800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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