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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0219400 |
| Transcript ID | LotjaGi1g1v0219400.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Isocitrate dehydrogenase [NADP]; TAIR: AT1G65930.1 cytosolic NADP+-dependent isocitrate dehydrogenase; Swiss-Prot: sp|Q06197|IDHC_SOYBN Isocitrate dehydrogenase [NADP]; TrEMBL-Plants: tr|A0A0R0GQK7|A0A0R0GQK7_SOYBN Isocitrate dehydrogenase [NADP]; Found in the gene: LotjaGi1g1v0219400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:48638986..48644202) extracted from Lotus japonicus Gifu genome v1.2.
CAAAGAAGTAATTGAAAGATATTAGGTGGGCAAAGACAAACACATACATGTTTGGATATATTTCAATAATTCAATAATAA TAATAATAATAATTGTTGAATATTCAGAAAACGTTCCTTGGCGTCCTGCTCCACGATAAATAGAACAACCAGCACCTCAA CTATTCACACTCTTCCTCGTGCTCTCGCTTCACTCCTTTCTCACCTACCCTTCCTTCCTTCCTTCCTTCCATCGCAGATC AGATTCACAAACCATGGCTTTCGACAAGATCAAGGTCGCCAACCCCATCGTTGAGATGGACGGTCTGTCAATCAATCTCT CTCTCTCTTCACCTTCCGATCTGATCTCTTCCGATTCTTCTTCATTTTCGATACAATCGATTTTGATTTCGATTTTTTGT TTTCTGGTTTCGTGTGTGTACTGAATTATCGTTTTGCTGCGATTGGGATATTTTTGATTCTGATATTTTCTTGTGGACCT CACTCTGTCCCGTTGTTGTTTGTTTCATCCTTGGATACGTTACATCAACTGAAAACTCATAAATATTCAATCGCTTTGTC TTCCTCTCTGATTTCCTTTTATTTTTCTTAATTTTATTTCTCGATCTGTGTTCTTGTTGTAGAGTAAATGTTTTCTGGTG AAAAAATTAAAATGCATTGAATTTTACCTTTCTTCAGAATCAATTCTGAATCCAGAAGCTTCTTTCTGATTGATTCTGAT TCTAGCTTTTGAATTGATGTTTGTTTTTGAATCAATTGTAAAACATGCTCGTAATTGTGGTAAAAGTATATCTAAAAATT GAATTTGCAAGGAAGTGTATTGCCATTTTAATTCACTGAAGGACTGAGGACTTGAAGGAGATGTTTGCTAGTTTTGATTC GAAATCATACTTTTCGAGGTTTTGATTCGTAATTGTGCTAATAATAGCTTAATACACTCACTGATGTCTCTTCTCTTGGG CTTAGCATGGATTTTACTTTGCATGTTGAAAATGATACCTGCCTCGTTTTTTAATGCGACATTGTGTATGATTCCTACTT TGTATTGCAGGAGATGAAATGACTCGAGTTATCTGGAAGTCAATCAAGGATAAGGTGATTTATCATGATCATCTTGCTCT TAGTTTCATTTTCTTGTGAAAAGTGCTTATAATTGTAATGTAATATATTTCTGTCATTTTCTTATGGCGTAGCTCATTTT GCCCTTCTTGGAGCTGGACATCAAGTACTTTGACTTGGGCCTTCCTTATCGTGATGAGACTGATGATAAAGTTACAGTTG AAAGTGCAGAAGCAACTCTTAAGTATGCTATTAGATAATGTGTTTCTTCTTATTATTTATTTGCTCTTGTATAATTGTTA TCATTGGTTCGCTAACGGTTTTACTGCTTTGTAGATATAATGTAGCAATCAAGTGTGCAACTATCACTCCAGGTATTGTT GTCAGATTCTAACATATTGTTTTTGTTTTTACCTTCGTATGAGTTTGAGTGAATGCATATACATTTTGTAATTAAGAAAT ACGGGATATCCTATTTATTGATTGTTCATGAATCATAATGATGGAATTGCTGCATCATAATTTTGCACTGGGCACTTGAT TTTGGCAGAGCTTATACTAGTGTTATAATTTATAGATGAAGCTCGTGTGAAGGAGTTTGGTCTGAAGCAAATGTGGAGGA GTCCAAATGGGACAATTAGGAATATTTTGAATGGTAAGCTAACTTAGTTTACTTGATTATTGTTTGTTAATGTTAAATAC TAGTAGTTAATTATTATAGTCTGGTCTGTCAATGGTAGCTAATAAGCAGTATATGAGTACTGCACATTATTGGCTTATTA TTTGTTTAAAAATATTTCAGGGACTGTCTTCAGAGAGCCAATTCTTTGCAAAAACGTCCCTCGCCTTGTTCCTGGTACTT ACACTGAAAATTTCTTTTTACTTATTCCTTGATGAATGGAGGTGTGTAAATCTTTCTCTGCATTGCCAGGTTGGACAAAG GCAATATGTATTGGAAGACATGCTTTTGGTGACCAATATCGGGCCACTGACCAAGTAATTAAAGGAGCTGGAAAGCTGAA GCTGGTTTTTGGTATACATCTTTCTTGATTTTGGGCAGCTTCTTGAGATTTCATTAGCTATTAAGCTAACTTATACTAAA CCTTGTTATATGTTCTTTATGGACTTGGTGTTTTTCAGTATATTTGTGGATAACTAGAGATTTTTTTTTTGTGAATTTTT TGATTCTTGTAGTTCCGGAAGGCCAAGGTGAGGAGACTGAATTGGAGGTTTATAACTTCACCGGTAAAGGAGGTGTTGCA TTGGCTATGTACAACACTGATGAGGTTGATTCTGCAGTGTCTTATATTAGTTTGATTAGATAGATTGCAGTGAAATCTGC TAGTTACTGAACTATCTATTCTTTGATATGAAGTCTATTCGTTCTTTTGCTGAGGCTTCCATGGCAACTGCTTATGAGAA AAAATGGCCACTTTATCTTAGCACCAAAAATACAATTCTTAAGAAATATGATGGAAGGTATGCAATTTATTATTAGCTTA TTATTTATTTCTTGTAAAAAATGTTTGCTGCATTGATCCCCTGTTTAATTATATTCATTTATTGGTTAAAGATTCAAGGA CATATTTCAAGAAGTTTATGAGGCAGGATGGAAATCGAAGTATGAGGCTGCTGGTATCTGGTGAGTGAATGGGTACTTTT GTTTTGGGATAATTATTCATATTATATTATTGTTTACCTTTGTCTGTTGTATTTGATAGGTATGAGCATCGGCTCATAGA TGATATGGTGGCATATGCACTTAAGAGTGAAGGAGGTTATGTATGGGCATGCAAAAACTACGATGGAGATGTCCAGAGTG ATTTCTTAGCTCAAGGTTTGTCTGATATGCTTGTTTATTAAGCACTTGCTTTTGCAATGTCAGATGCAGAGATTTCTTTT CCTCTTTAACTAATACCTATTCACACTTTCATAGGTTTTGGATCATTGGGTTTGATGACATCTGTACTGGTACGTGTTAT CCCAAGTTCCTGAATATACTTTTTGAAATTTTTATTCTTATCCACATTTTATGGAAAATCTTTTCTCTCAGTTGCTGCAA TAACTCGTTAAGAATGAAATCAACCATTCTTGTGAATGATTTATTGGCCTTGGAACATACTTTGAGATTTCTTCTAGTCT ATGCCTGCGGATACTAATTGAATCATGGGATGTGTTCAGGTTTGCCCTGATGGAAAGACCATTGAAGCAGAAGCAGCCCA TGGCACAGTTACCCGTCATTTTAGGGTTCATCAGAAGGGTGGGGAAACCAGCACAAACAGCATAGCATCCATCTTTGCTT GGACAAGAGGGCTAGCTCACAGGTATAGTGCAGTGTAATTTCCATCGTTGAGTGCCAAGCTACCCAATGTGTTAGAAGCT CTTTGCTTATAATATTTTGATATATTATGGAATTAAATGTTTCTTTCTTGACAGGGCTAAACTGGATGACAATGCTAAAC TCTCGGATTTCACTGACAAGCTAGAGGCAGCTTGCATCGGAGTAGTAGAGTCAGGGAAGATGACCAAGGATTTGGCACTT ATTCTTCATGGATCCAAGTATGTTGCTTATCATTGTTGTGTTATTTCAACATTGACCAATTGCATTTGCTTCTCTACTTG ATAGATTAATAATCTTCTACTATATAATTCTTGCTACTAGGCTTTCAAGGGAGCATTATTTGAACACTGAGGAATTCATC GATGCTGTGGCAGCCGAGCTCAAGGCAAAGCTTTCTGCTTAAAATGATGGGTTTAGGTAGGCTGCTATCTAGTTCCCTTC ATATGGCACACATATAATAGTTATCATATTGCTTTCTATAATCATATTCCATCCACTTTTTATACCTTAATTTTGTTTTG TTTCTTTGTTCGTAGAGTCATTTCAGACAGGAGAGATAGAGCAAAGCTGAAAAGGGATCGTGTGCACTGTCACAAGAAAT AAGAAAGGGAAAAGAAGCATCTGTCCTTAACCCCTTTTCCCTACATTGGTGTGTTGGGTGGGAATACTAGGGCTTTGCTG CTTCCCCATATTTGTTTGAACTGATTAGTCTTTTGTAATTTTGAACCTGAGTTGCTACATTTCTGCTGATTTTACTTTGG ATGTTTTGAGTTGTTATTACCTGCATAAATGCAAAGGTAGACATAATTCCGAGTAATGATTTACTCATTAAAATAAGAAT TGCATAGCCGGCAATTATCGTACTTATAATTGCAAATTAATGATTTTGATAATTCTGTCATTTTAAAGAAGTTAGAATTA AGATATTATCAACTCATCCTGGACTAAGGAAGCAAGTTCTTGTGGAACTTCTTCAATCCTAACCAAGTTATCACAAGAAA AAGGAAGTTTTGCCAAACAATCGGTTACAAAGTTACTAGTTCTAAGAACAAATGACTAATCCCCAAAATCAAATCAAGAC AATCACGCCAAATAGTAGATAAATAAAAGCATTCTCCCGAGGTCTCTTCCAAGCCTAAAAAATGAGCATACGATTTGTCT CAAAACAGGAATGACAGAAGAAGAGATTAGAAGCTAGGGCAAGAGGCCAAACGAAGGCACATAGCCTCAGCCAACACTGG GGATAAAGTTGCCTATGAAGCTGAAGTCGCCATTGTGATAGTCTCTCCGTTGGCATCTCGCACAATACAACCAAATCCAT TTAACCTAAAGGCGGTAACAGAGGCATTATAATTGACCTTGACCTTCACCACATCTGGGGGAGGTTGCTCCCACGCTAAA GGAAGCACCCAAGAATTGGCCGAGCAAAGGAGTTTATAGCCACTAAAGAAGAACATAGCGCAACAACACATGTTTTCAAC ACATATGTTTTGTGATATGAGATGTTTGGAATATCGTTCTATGCACCATCCAAGTTATTTAATCTTAAATACCAACTTAG AACTAATTGTTTTCTTTAAGTGCTCGTTTTCTTCATCACATATTGTATACTTATTTAACATTACTTTTTGTACTTATTTA AATCCATTGCTTAGGTTTTTGTCAATTGATGAACAACCTACAGCCGCTGCATATATTGTTCAAGTTCACCACGCAGAGCT CAAAAGTGGACATGAAGTAGCAATCTAGGTTTGTCTGTGGGTGTCAGTTGTTTCCTTTGATGGTTGTCATTATGTACAAT ACTTTTTTTAAAATGAC
CDS sequence (LotjaGi1g1v0219400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTTTCGACAAGATCAAGGTCGCCAACCCCATCGTTGAGATGGACGGAGATGAAATGACTCGAGTTATCTGGAAGTC AATCAAGGATAAGCTCATTTTGCCCTTCTTGGAGCTGGACATCAAGTACTTTGACTTGGGCCTTCCTTATCGTGATGAGA CTGATGATAAAGTTACAGTTGAAAGTGCAGAAGCAACTCTTAAATATAATGTAGCAATCAAGTGTGCAACTATCACTCCA GATGAAGCTCGTGTGAAGGAGTTTGGTCTGAAGCAAATGTGGAGGAGTCCAAATGGGACAATTAGGAATATTTTGAATGG GACTGTCTTCAGAGAGCCAATTCTTTGCAAAAACGTCCCTCGCCTTGTTCCTGGTTGGACAAAGGCAATATGTATTGGAA GACATGCTTTTGGTGACCAATATCGGGCCACTGACCAAGTAATTAAAGGAGCTGGAAAGCTGAAGCTGGTTTTTGTTCCG GAAGGCCAAGGTGAGGAGACTGAATTGGAGGTTTATAACTTCACCGGTAAAGGAGGTGTTGCATTGGCTATGTACAACAC TGATGAGTCTATTCGTTCTTTTGCTGAGGCTTCCATGGCAACTGCTTATGAGAAAAAATGGCCACTTTATCTTAGCACCA AAAATACAATTCTTAAGAAATATGATGGAAGATTCAAGGACATATTTCAAGAAGTTTATGAGGCAGGATGGAAATCGAAG TATGAGGCTGCTGGTATCTGGTATGAGCATCGGCTCATAGATGATATGGTGGCATATGCACTTAAGAGTGAAGGAGGTTA TGTATGGGCATGCAAAAACTACGATGGAGATGTCCAGAGTGATTTCTTAGCTCAAGGTTTTGGATCATTGGGTTTGATGA CATCTGTACTGGTTTGCCCTGATGGAAAGACCATTGAAGCAGAAGCAGCCCATGGCACAGTTACCCGTCATTTTAGGGTT CATCAGAAGGGTGGGGAAACCAGCACAAACAGCATAGCATCCATCTTTGCTTGGACAAGAGGGCTAGCTCACAGGGCTAA ACTGGATGACAATGCTAAACTCTCGGATTTCACTGACAAGCTAGAGGCAGCTTGCATCGGAGTAGTAGAGTCAGGGAAGA TGACCAAGGATTTGGCACTTATTCTTCATGGATCCAAGCTTTCAAGGGAGCATTATTTGAACACTGAGGAATTCATCGAT GCTGTGGCAGCCGAGCTCAAGGCAAAGCTTTCTGCTTAA
Protein sequence (LotjaGi1g1v0219400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAFDKIKVANPIVEMDGDEMTRVIWKSIKDKLILPFLELDIKYFDLGLPYRDETDDKVTVESAEATLKYNVAIKCATITP DEARVKEFGLKQMWRSPNGTIRNILNGTVFREPILCKNVPRLVPGWTKAICIGRHAFGDQYRATDQVIKGAGKLKLVFVP EGQGEETELEVYNFTGKGGVALAMYNTDESIRSFAEASMATAYEKKWPLYLSTKNTILKKYDGRFKDIFQEVYEAGWKSK YEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHFRV HQKGGETSTNSIASIFAWTRGLAHRAKLDDNAKLSDFTDKLEAACIGVVESGKMTKDLALILHGSKLSREHYLNTEEFID AVAAELKAKLSA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 412 | 412 | 3.2E-224 | – | |
| PIRSF | 1 | 412 | 412 | 2.1E-225 | ||
| PANTHER | 3 | 409 | 407 | 6.6E-274 | – | |
| SUPERFAMILY | 3 | 410 | 408 | 4.42E-152 | – | |
| PANTHER | 3 | 409 | 407 | 6.6E-274 | ||
| TIGRFAM | 5 | 411 | 407 | 1.8E-245 | ||
| Pfam | 7 | 402 | 396 | 7.8E-98 | ||
| SMART | 11 | 402 | 392 | 1.3E-126 | ||
| ProSitePatterns | 273 | 292 | 20 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Magnesium ion binding | Interacting selectively and non-covalently with magnesium (Mg) ions. | ||
| Molecular function | Isocitrate dehydrogenase (NADP+) activity | Catalysis of the reaction: isocitrate + NADP+ = 2-oxoglutarate + CO2 + NADPH + H+. | ||
| Biological process | Isocitrate metabolic process | The chemical reactions and pathways involving isocitrate, the anion of isocitric acid, 1-hydroxy-1,2,3-propanetricarboxylic acid. Isocitrate is an important intermediate in the TCA cycle and the glycoxylate cycle. | ||
| Molecular function | Oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor | Catalysis of an oxidation-reduction (redox) reaction in which a CH-OH group acts as a hydrogen or electron donor and reduces NAD+ or NADP. | ||
| Molecular function | NAD binding | Interacting selectively and non-covalently with nicotinamide adenine dinucleotide, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NAD+, or the reduced form, NADH. | ||
| Biological process | Oxidation-reduction process | A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. |
Expression pattern of LotjaGi1g1v0219400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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