Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0219400 |
| Transcript ID | LotjaGi1g1v0219400.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Isocitrate dehydrogenase [NADP]; TAIR: AT1G65930.1 cytosolic NADP+-dependent isocitrate dehydrogenase; Swiss-Prot: sp|Q06197|IDHC_SOYBN Isocitrate dehydrogenase [NADP]; TrEMBL-Plants: tr|C6T857|C6T857_SOYBN Isocitrate dehydrogenase [NADP]; Found in the gene: LotjaGi1g1v0219400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:48639880..48642787) extracted from Lotus japonicus Gifu genome v1.2.
CGAGGTTTTGATTCGTAATTGTGCTAATAATAGCTTAATACACTCACTGATGTCTCTTCTCTTGGGCTTAGCATGGATTT TACTTTGCATGTTGAAAATGATACCTGCCTCGTTTTTTAATGCGACATTGTGTATGATTCCTACTTTGTATTGCAGGAGA TGAAATGACTCGAGTTATCTGGAAGTCAATCAAGGATAAGGTGATTTATCATGATCATCTTGCTCTTAGTTTCATTTTCT TGTGAAAAGTGCTTATAATTGTAATGTAATATATTTCTGTCATTTTCTTATGGCGTAGCTCATTTTGCCCTTCTTGGAGC TGGACATCAAGTACTTTGACTTGGGCCTTCCTTATCGTGATGAGACTGATGATAAAGTTACAGTTGAAAGTGCAGAAGCA ACTCTTAAGTATGCTATTAGATAATGTGTTTCTTCTTATTATTTATTTGCTCTTGTATAATTGTTATCATTGGTTCGCTA ACGGTTTTACTGCTTTGTAGATATAATGTAGCAATCAAGTGTGCAACTATCACTCCAGGTATTGTTGTCAGATTCTAACA TATTGTTTTTGTTTTTACCTTCGTATGAGTTTGAGTGAATGCATATACATTTTGTAATTAAGAAATACGGGATATCCTAT TTATTGATTGTTCATGAATCATAATGATGGAATTGCTGCATCATAATTTTGCACTGGGCACTTGATTTTGGCAGAGCTTA TACTAGTGTTATAATTTATAGATGAAGCTCGTGTGAAGGAGTTTGGTCTGAAGCAAATGTGGAGGAGTCCAAATGGGACA ATTAGGAATATTTTGAATGGTAAGCTAACTTAGTTTACTTGATTATTGTTTGTTAATGTTAAATACTAGTAGTTAATTAT TATAGTCTGGTCTGTCAATGGTAGCTAATAAGCAGTATATGAGTACTGCACATTATTGGCTTATTATTTGTTTAAAAATA TTTCAGGGACTGTCTTCAGAGAGCCAATTCTTTGCAAAAACGTCCCTCGCCTTGTTCCTGGTACTTACACTGAAAATTTC TTTTTACTTATTCCTTGATGAATGGAGGTGTGTAAATCTTTCTCTGCATTGCCAGGTTGGACAAAGGCAATATGTATTGG AAGACATGCTTTTGGTGACCAATATCGGGCCACTGACCAAGTAATTAAAGGAGCTGGAAAGCTGAAGCTGGTTTTTGGTA TACATCTTTCTTGATTTTGGGCAGCTTCTTGAGATTTCATTAGCTATTAAGCTAACTTATACTAAACCTTGTTATATGTT CTTTATGGACTTGGTGTTTTTCAGTATATTTGTGGATAACTAGAGATTTTTTTTTTGTGAATTTTTTGATTCTTGTAGTT CCGGAAGGCCAAGGTGAGGAGACTGAATTGGAGGTTTATAACTTCACCGGTAAAGGAGGTGTTGCATTGGCTATGTACAA CACTGATGAGGTTGATTCTGCAGTGTCTTATATTAGTTTGATTAGATAGATTGCAGTGAAATCTGCTAGTTACTGAACTA TCTATTCTTTGATATGAAGTCTATTCGTTCTTTTGCTGAGGCTTCCATGGCAACTGCTTATGAGAAAAAATGGCCACTTT ATCTTAGCACCAAAAATACAATTCTTAAGAAATATGATGGAAGGTATGCAATTTATTATTAGCTTATTATTTATTTCTTG TAAAAAATGTTTGCTGCATTGATCCCCTGTTTAATTATATTCATTTATTGGTTAAAGATTCAAGGACATATTTCAAGAAG TTTATGAGGCAGGATGGAAATCGAAGTATGAGGCTGCTGGTATCTGGTGAGTGAATGGGTACTTTTGTTTTGGGATAATT ATTCATATTATATTATTGTTTACCTTTGTCTGTTGTATTTGATAGGTATGAGCATCGGCTCATAGATGATATGGTGGCAT ATGCACTTAAGAGTGAAGGAGGTTATGTATGGGCATGCAAAAACTACGATGGAGATGTCCAGAGTGATTTCTTAGCTCAA GGTTTGTCTGATATGCTTGTTTATTAAGCACTTGCTTTTGCAATGTCAGATGCAGAGATTTCTTTTCCTCTTTAACTAAT ACCTATTCACACTTTCATAGGTTTTGGATCATTGGGTTTGATGACATCTGTACTGGTACGTGTTATCCCAAGTTCCTGAA TATACTTTTTGAAATTTTTATTCTTATCCACATTTTATGGAAAATCTTTTCTCTCAGTTGCTGCAATAACTCGTTAAGAA TGAAATCAACCATTCTTGTGAATGATTTATTGGCCTTGGAACATACTTTGAGATTTCTTCTAGTCTATGCCTGCGGATAC TAATTGAATCATGGGATGTGTTCAGGTTTGCCCTGATGGAAAGACCATTGAAGCAGAAGCAGCCCATGGCACAGTTACCC GTCATTTTAGGGTTCATCAGAAGGGTGGGGAAACCAGCACAAACAGCATAGCATCCATCTTTGCTTGGACAAGAGGGCTA GCTCACAGGTATAGTGCAGTGTAATTTCCATCGTTGAGTGCCAAGCTACCCAATGTGTTAGAAGCTCTTTGCTTATAATA TTTTGATATATTATGGAATTAAATGTTTCTTTCTTGACAGGGCTAAACTGGATGACAATGCTAAACTCTCGGATTTCACT GACAAGCTAGAGGCAGCTTGCATCGGAGTAGTAGAGTCAGGGAAGATGACCAAGGATTTGGCACTTATTCTTCATGGATC CAAGTATGTTGCTTATCATTGTTGTGTTATTTCAACATTGACCAATTGCATTTGCTTCTCTACTTGATAGATTAATAATC TTCTACTATATAATTCTTGCTACTAGGCTTTCAAGGGAGCATTATTTGAACACTGAGGAATTCATCGATGCTGTGGCAGC CGAGCTCAAGGCAAAGCTTTCTGCTTAA
CDS sequence (LotjaGi1g1v0219400.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACTCGAGTTATCTGGAAGTCAATCAAGGATAAGCTCATTTTGCCCTTCTTGGAGCTGGACATCAAGTACTTTGACTT GGGCCTTCCTTATCGTGATGAGACTGATGATAAAGTTACAGTTGAAAGTGCAGAAGCAACTCTTAAATATAATGTAGCAA TCAAGTGTGCAACTATCACTCCAGATGAAGCTCGTGTGAAGGAGTTTGGTCTGAAGCAAATGTGGAGGAGTCCAAATGGG ACAATTAGGAATATTTTGAATGGGACTGTCTTCAGAGAGCCAATTCTTTGCAAAAACGTCCCTCGCCTTGTTCCTGGTTG GACAAAGGCAATATGTATTGGAAGACATGCTTTTGGTGACCAATATCGGGCCACTGACCAAGTAATTAAAGGAGCTGGAA AGCTGAAGCTGGTTTTTGTTCCGGAAGGCCAAGGTGAGGAGACTGAATTGGAGGTTTATAACTTCACCGGTAAAGGAGGT GTTGCATTGGCTATGTACAACACTGATGAGTCTATTCGTTCTTTTGCTGAGGCTTCCATGGCAACTGCTTATGAGAAAAA ATGGCCACTTTATCTTAGCACCAAAAATACAATTCTTAAGAAATATGATGGAAGATTCAAGGACATATTTCAAGAAGTTT ATGAGGCAGGATGGAAATCGAAGTATGAGGCTGCTGGTATCTGGTATGAGCATCGGCTCATAGATGATATGGTGGCATAT GCACTTAAGAGTGAAGGAGGTTATGTATGGGCATGCAAAAACTACGATGGAGATGTCCAGAGTGATTTCTTAGCTCAAGG TTTTGGATCATTGGGTTTGATGACATCTGTACTGGTTTGCCCTGATGGAAAGACCATTGAAGCAGAAGCAGCCCATGGCA CAGTTACCCGTCATTTTAGGGTTCATCAGAAGGGTGGGGAAACCAGCACAAACAGCATAGCATCCATCTTTGCTTGGACA AGAGGGCTAGCTCACAGGGCTAAACTGGATGACAATGCTAAACTCTCGGATTTCACTGACAAGCTAGAGGCAGCTTGCAT CGGAGTAGTAGAGTCAGGGAAGATGACCAAGGATTTGGCACTTATTCTTCATGGATCCAAGCTTTCAAGGGAGCATTATT TGAACACTGAGGAATTCATCGATGCTGTGGCAGCCGAGCTCAAGGCAAAGCTTTCTGCTTAA
Protein sequence (LotjaGi1g1v0219400.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTRVIWKSIKDKLILPFLELDIKYFDLGLPYRDETDDKVTVESAEATLKYNVAIKCATITPDEARVKEFGLKQMWRSPNG TIRNILNGTVFREPILCKNVPRLVPGWTKAICIGRHAFGDQYRATDQVIKGAGKLKLVFVPEGQGEETELEVYNFTGKGG VALAMYNTDESIRSFAEASMATAYEKKWPLYLSTKNTILKKYDGRFKDIFQEVYEAGWKSKYEAAGIWYEHRLIDDMVAY ALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHFRVHQKGGETSTNSIASIFAWT RGLAHRAKLDDNAKLSDFTDKLEAACIGVVESGKMTKDLALILHGSKLSREHYLNTEEFIDAVAAELKAKLSA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | 1 | 391 | 391 | 8.64E-144 | – | |
| Gene3D | 1 | 393 | 393 | 2.0E-212 | – | |
| PANTHER | 1 | 390 | 390 | 3.2E-262 | – | |
| PANTHER | 1 | 390 | 390 | 3.2E-262 | ||
| PIRSF | 1 | 393 | 393 | 7.6E-215 | ||
| TIGRFAM | 1 | 392 | 392 | 3.7E-235 | ||
| Pfam | 1 | 383 | 383 | 5.3E-93 | ||
| SMART | 1 | 383 | 383 | 1.1E-116 | ||
| ProSitePatterns | 254 | 273 | 20 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Magnesium ion binding | Interacting selectively and non-covalently with magnesium (Mg) ions. | ||
| Molecular function | Isocitrate dehydrogenase (NADP+) activity | Catalysis of the reaction: isocitrate + NADP+ = 2-oxoglutarate + CO2 + NADPH + H+. | ||
| Biological process | Isocitrate metabolic process | The chemical reactions and pathways involving isocitrate, the anion of isocitric acid, 1-hydroxy-1,2,3-propanetricarboxylic acid. Isocitrate is an important intermediate in the TCA cycle and the glycoxylate cycle. | ||
| Molecular function | Oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor | Catalysis of an oxidation-reduction (redox) reaction in which a CH-OH group acts as a hydrogen or electron donor and reduces NAD+ or NADP. | ||
| Molecular function | NAD binding | Interacting selectively and non-covalently with nicotinamide adenine dinucleotide, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NAD+, or the reduced form, NADH. | ||
| Biological process | Oxidation-reduction process | A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. |
Expression pattern of LotjaGi1g1v0219400.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…