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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0220500 |
| Transcript ID | LotjaGi1g1v0220500.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Expansin; TAIR: AT1G69530.1 expansin A1; Swiss-Prot: sp|Q9C554|EXPA1_ARATH Expansin-A1; TrEMBL-Plants: tr|A0A151RX84|A0A151RX84_CAJCA Expansin-A15; Found in the gene: LotjaGi1g1v0220500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:49031313..49034088) extracted from Lotus japonicus Gifu genome v1.2.
CTCATCCCTGCATAACAAAACGAAATAGCTGCACTTGGCGATAATGGGTCCCCACAGTTCACAAATGTGTCATGCTATGA CGTTGGTTAAAGCCAGAACCCTCTTCGCTTCCTTCTATTTATTCCCCACACTTGCTCCTCTGCTTTTCCTCACAACTCAC CACCTCTTTATCTCCTCTGTATTCATTCAGGAGTTATATTATACTTCATAACACTAAGATTCATCCTCTTAATTTCTACA GAAAAGAAAAAGATGGCGCTTTTGGGGCTTCTGATCTTGCTGGGATTTCTCTCTCTGGGTTCATCTGTCCATGCGGTTGG TAATAATGGTGGTTGGGTGAATGCCCATGCAACCTTCTATGGAGGAGGCGACGCGGCTGGCACAATGGGTGAGTAGAAAA TTCTAATTGACAAATTAAAAGTTTCTCTGTGAATTAATTTTAACACGTAAGAAACATATTATAAATAAAATGTACGAATT ATTTTTCCGTGGTCTAGAAGTGGACCGATTTTTAACATGGTATAGAATTGCCAAACTTATGTAGTGTGATTTATGTTTTT TACCAGGTGGAGCTTGTGGATATGGGAATTTATATAGTCAGGGGTATGGGACTAACACTGCTGCTCTGAGCACTGCCTTG TTTAACAATGGTTTAAGCTGTGGGGCATGTTTTGAAATTAAGTGTGTGAATGACCAAAAGTGGTGCCTTCCAAAATCAAT TGTGGTCACTGCAACCAATTTTTGCCCTCCAAACAATGCCCTCCCTAACAATGCAGGTGGGTGGTGCAACCCTCCCCTTC AACATTTTGATCTCGCTCAGCCTGTTTTCCAACAAATTGCTCAATACAAAGCTGGAATAGTACCCGTTGCTTACCGAAGG TAATTTACTTCATTTTAATTTGTCTTTTTTTCTCAAATTCTCAGGCTCTGTTTTGGATTTTTTTTTTTTTTATCAAGTTG TCAGCACTGTGCACTGCACGAGTGATCATGAGTCATCTAGTGCCTAATAAAACAAAATCTGGTAATTGTTGTCATTTTTC ACACATCAAGGTTGGCCCTGTACCCTGCAGCATAGTGTAGAATCTTTTTCCATTGTTCTAACCAAGGTTTTTTTTACTAT ATTCCTTGCCTAATTATACTTAGAGTGCCTCTTACGGTACCCTTTCAAAATGAGAGAGTTTAGTATCATGAATCTTGTGA CTAAATTATAAATTACAGAAGTTTATTAAAAAAAACTAACATTATACATCAAAACAAAAATGTATGAAACTCCTTCATTT AAAAAGGGGTACCAGAGAAAGAACTGTATATTTTCCACAACAAACCATACACAATTAAAATTGTAGTCTGCAAAATTTTC ATATAATTATTTTTTCCAAAATTTTTACCTATTTTACCTTTTGTGAAAGGATTCTCTGAACAATTAACGTATTATCTTAC AATATAGAATCAAATATTTAAGTATCTTCTATTCACTTTTTAAAGTTGAAGAGGTGTTACTGAAGGCAAGTTGGTACAGG GACATCTAACCTGTTAAAATAGCTTAGGATTCTCAAATTCTCTGTTTTTAACCCTTCAAAAATATATTTTCACATTAAAA GACTACATATATTCTTAATTTTAATGTTCTCGTGATTTCTAGATAGGAATATATTCCACTAGCAACCCCTTTTGTGTTGA TACCTTAGTTTGGCACTTTGTCTGGATTGTCTGACCTAACTATCTGGTTCTCTTTTTTTCCCCTTTTAATTTTGTTCAGG GTCCCTTGCCAAAAGAGAGGAGGCATCAGATTCACAATCAATGGCCATTCTTACTTCAACCTAGTACTAATCACCAACGT TGGTGGTGCTGGAGATGTTCAATCAGTTTCCATAAAAGGTTCAAGAACTAATTGGCAACCAATGTCCAGAAACTGGGGTC AGAACTGGCAAAGCAACTCTTATCTCAATGGTCAGAGCCTATCCTTCAAGGTCACCACTAGCGACGGTCGCACCGTCGTC ACTGAAAACGCTGTGCCTGCTGGCTGGTCCTTTGGCCAAACCTTCTCAGGCCATCAATTCCCTTGAGAGACACAAAAAAA AGGGAGTCTGGTGTATCAAAGCTCCTACTATACACGCAGCAACAATTTTTTATCATTGCGCCAAGGCTCCCTTATCCGAG AAACACAGAACGACATAAATTAATTAATTAAACCATTTAAATTTAGTTATTGAGCGTTGGGAGCTAAAACTAGTTTATTT GTCTTAAATTAGTAGTGTAATAATACAAGTGGGGTATATAATAGAGAAGTTACATGAGTTAGGAGTGAGTGATTTTGGTG AGTTTTGGGAGCAAATGAAAAGGGCTTATTTTAAGATGGTCCTGGTCATTATTGCTTCTTGATGAGGAACTATGTTCTGC TTTCAGTTTGAAGAAGGCAGAGACAGTTTAGATGGCAGTGGTGGATGTTTACTATACGCTTTACCACCCGCCAATATAGT GTATTCTATGATTTGTGTTATGTATAATCCCCATGTTGAAAATAAAATGCATGATATTTGCTAGCATATAGCCAAAGAGT ATAATAAAGAAGAGATAAAGCAGTTTTTTTGCTCCTTAGCATTTGTTTTGAACTTTATGTAGCCTAGTTTAAGAGTGAAT GTATGTATGATATGGCATATACAAATGAATAAACTTAATACCCAATTACCCATGAGTTCAAAGTGTTTGTACCTCAGCCA GCTACCTTTTCATTTTTTTTTTTTTCTTTTCGGTGGGAATGCAATTCTTAAGTCAT
CDS sequence (LotjaGi1g1v0220500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGCTTTTGGGGCTTCTGATCTTGCTGGGATTTCTCTCTCTGGGTTCATCTGTCCATGCGGTTGGTAATAATGGTGG TTGGGTGAATGCCCATGCAACCTTCTATGGAGGAGGCGACGCGGCTGGCACAATGGGTGGAGCTTGTGGATATGGGAATT TATATAGTCAGGGGTATGGGACTAACACTGCTGCTCTGAGCACTGCCTTGTTTAACAATGGTTTAAGCTGTGGGGCATGT TTTGAAATTAAGTGTGTGAATGACCAAAAGTGGTGCCTTCCAAAATCAATTGTGGTCACTGCAACCAATTTTTGCCCTCC AAACAATGCCCTCCCTAACAATGCAGGTGGGTGGTGCAACCCTCCCCTTCAACATTTTGATCTCGCTCAGCCTGTTTTCC AACAAATTGCTCAATACAAAGCTGGAATAGTACCCGTTGCTTACCGAAGGGTCCCTTGCCAAAAGAGAGGAGGCATCAGA TTCACAATCAATGGCCATTCTTACTTCAACCTAGTACTAATCACCAACGTTGGTGGTGCTGGAGATGTTCAATCAGTTTC CATAAAAGGTTCAAGAACTAATTGGCAACCAATGTCCAGAAACTGGGGTCAGAACTGGCAAAGCAACTCTTATCTCAATG GTCAGAGCCTATCCTTCAAGGTCACCACTAGCGACGGTCGCACCGTCGTCACTGAAAACGCTGTGCCTGCTGGCTGGTCC TTTGGCCAAACCTTCTCAGGCCATCAATTCCCTTGA
Protein sequence (LotjaGi1g1v0220500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MALLGLLILLGFLSLGSSVHAVGNNGGWVNAHATFYGGGDAAGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGAC FEIKCVNDQKWCLPKSIVVTATNFCPPNNALPNNAGGWCNPPLQHFDLAQPVFQQIAQYKAGIVPVAYRRVPCQKRGGIR FTINGHSYFNLVLITNVGGAGDVQSVSIKGSRTNWQPMSRNWGQNWQSNSYLNGQSLSFKVTTSDGRTVVTENAVPAGWS FGQTFSGHQFP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 1 | 1 | - | – | |
| SignalP_EUK | 1 | 21 | 21 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 21 | 21 | - | – | |
| Phobius | 1 | 21 | 21 | - | – | |
| SignalP_GRAM_NEGATIVE | 1 | 21 | 21 | - | – | |
| Phobius | 2 | 13 | 12 | - | – | |
| PANTHER | 3 | 250 | 248 | 2.6E-155 | – | |
| PANTHER | 3 | 250 | 248 | 2.6E-155 | – | |
| Phobius | 14 | 21 | 8 | - | – | |
| Gene3D | 16 | 154 | 139 | 4.6E-45 | ||
| Phobius | 22 | 251 | 230 | - | – | |
| SUPERFAMILY | 27 | 176 | 150 | 4.19E-57 | ||
| PRINTS | 27 | 42 | 16 | 1.8E-52 | ||
| PRINTS | 45 | 63 | 19 | 1.8E-52 | ||
| ProSiteProfiles | 46 | 158 | 113 | 30.565 | ||
| PRINTS | 58 | 72 | 15 | 7.1E-83 | ||
| Pfam | 63 | 148 | 86 | 1.2E-22 | ||
| SMART | 63 | 148 | 86 | 4.8E-55 | ||
| PRINTS | 67 | 85 | 19 | 1.8E-52 | ||
| PRINTS | 85 | 96 | 12 | 7.1E-83 | ||
| PRINTS | 97 | 107 | 11 | 7.1E-83 | ||
| PRINTS | 116 | 133 | 18 | 7.1E-83 | ||
| PRINTS | 133 | 146 | 14 | 7.1E-83 | ||
| PRINTS | 141 | 157 | 17 | 1.8E-52 | ||
| SUPERFAMILY | 155 | 246 | 92 | 2.49E-36 | ||
| PRINTS | 157 | 169 | 13 | 7.1E-83 | ||
| Gene3D | 158 | 250 | 93 | 3.5E-26 | ||
| Pfam | 159 | 236 | 78 | 8.7E-31 | ||
| ProSiteProfiles | 168 | 247 | 80 | 23.236 | ||
| PRINTS | 169 | 190 | 22 | 7.1E-83 | ||
| PRINTS | 195 | 209 | 15 | 1.8E-52 | ||
| PRINTS | 204 | 225 | 22 | 7.1E-83 | ||
| PRINTS | 233 | 249 | 17 | 7.1E-83 | ||
| PRINTS | 233 | 247 | 15 | 1.8E-52 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Extracellular region | The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite. | ||
| Biological process | Plant-type cell wall organization | A process that results in the assembly and arrangement of constituent parts of the cellulose and pectin-containing cell wall, or in the disassembly of the cellulose and pectin-containing cell wall. This process is carried out at the cellular level. An example of this process is found in Arabidopsis thaliana. |
Expression pattern of LotjaGi1g1v0220500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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