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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0220700 |
| Transcript ID | LotjaGi1g1v0220700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Chlorophyll a-b binding protein, chloroplastic; TAIR: AT3G47470.1 light-harvesting chlorophyll-protein complex I subunit A4; Swiss-Prot: sp|Q9SQL2|CB24_PEA Chlorophyll a-b binding protein P4, chloroplastic; TrEMBL-Plants: tr|I3S9Y6|I3S9Y6_LOTJA Chlorophyll a-b binding protein, chloroplastic; Found in the gene: LotjaGi1g1v0220700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:49055550..49059482) extracted from Lotus japonicus Gifu genome v1.2.
CATTTGATGACCCCACAGAATCTTTTCCCAGCCAACAACGATGTGAAGAAATAGATTTGCGGATATAACACTGAGATAAA AGGATAAGGCAAAACGCACGCCCACCGTCCGATCCAAAATATCGCAAGATCCAACGGTGGATCACAAGCAGGCCACAAGA ACCACATGAATGGCTTTGAAACCAAATACATATGAAACAAACCACTCCTCATATTTTCATCTTCTACTGCCACAACCACC ATCACCACCACTGCCACTAGCAGCAGCTGAACAACATGGCCACCGTGACTACACAAGCTTCCGCCGCTATTTTCCGGCCA TGTGCTTCTAGGTCGAGGTTTCTTACCGGCTCTTCTGGTAAACTGAACAGGGAAGTAGCTTTTAGGCCAATGGGGTGTCC TCCTTCTACTTCTTTCAAGGTAGAAGCTAAAAAAGGAGAGTGGTTACCTGGCTTGGCCTCCCCAAATTACCTCAATGGCA GGTATGTAACATATGTAATATTTGGTATGTGTTTAGAATTTCATTAATAACACATATACAAGTGCTTCTAACAGAAATTT ATGTAAAATAAAAGAATCTTAGTATAAGAATTCCAAACACTAATTAGTTATCATAATAGATGTTACACCTCACATTACTT AAATACCCATGTGCAAGTTGTTAAATATCACTATAGTACCCTGATCACTATAATTAATAATTATAATTAGAAATGAGTTC TTTGGTAAAAATTTATTTCATACTATTATCATCTGAAATTTGTGTGTTTTGTTTTAGAAATCTCATATTAATCAAAGATA TCAAACAATTCAGTTGTTATGAAGAGCAACTGTCATCTCTAATCAAGTTTTTTTTTTTATAAATAAAGTTAGATTTAACA TAAATTTTTAGATAATATCCGGTAACCGGTAATTGGGCTACCCATATATGGGTTTACCCACATATATGTTCATACCCTGA GTATGTGTGTGTTGAGACGTTCTAGATTAATTAGAGATATGATCCAATTAATCTTTATAAATGGTAGAGTAATCTAAGAA TTTGTTTTCATGTTTACAAGCTTTAATTAACATCTACCTAGTGAATGTCTGTCAAGATAAGAATCAATTGTGGCAAATTT TGAGTGACACACTTAATAGTTAATACACACAAATCACATGGTTTGTGAACATGAGATTGAATGCATGCATTCTTATTAGA GAAATCCTAGCATTATATTTTTTTAAGGACACACTCCAAGTACTCATTGTAACATGTTTATTTTTATGCCGGTTTTAGTC TTCCTGGTGACAATGGGTTTGATCCTCTGGCACTAGCTGAAGACCCAGAGAACCTGAAGTGGTTTGTTCAAGCAGAGCTT GTGAACGGACGATGGGCCATGTTGGGTGTTGCAGGGATGTTGCTTCCTGAGGTACTCACCAACATTGGACTCATCAATGT CCCCAAATGGTATGATGCTGGGAAAGCAGAGTACTTTGCTTCATCCTCAACCCTCTTTGTGATTGAGTTCATCCTGTTCC ACTATGTGGAGATTAGAAGATGGCAGGACATTAAGAACCCTGGCAGTGTCAACCAAGACCCCATCTTCAAGCAATACAGC TTGCCCCCAAATGAAGTTGGCTACCCTGGTGGCATTTTCAACCCCTTGAACTTTGCACCAACTGAAGAGGCCAAAGAAAA GGAACTTGCCAATGGTAATTTAATGCTTTCTGTGCATGTTCGGATACACGCAAGAAAACCACGATAAAAGCAAAATCACA ATGCACAACAGCAAAAGCTTAGGAAGCTGCTTCTGTCCATTGTGATTTTTTCTCACTGTGGTTTTTTATAGTGTATCTAA AAATGCGCTTACTATCTTCTTCGATTAAAGTTGGACTGCACAAGAGTCTAATTTTTTTTATTGGATGCAAATATTGAGTT AAAACTTTTTGTTTACAGGGAGATTGGCAATGTTGGCATTCTTGGGATTTATTGTTCAACACAACGTGACAGGGAAAGGG CCATTTGATAACCTCTTGCAGCACCTCTCTGATCCATGGCACAACACCATTGTCCAAACACTGAGTGGCAACTAATTAAG AGTTTGTATCCTGTTATGACATGAAAGCTTGTGTGTCCTACTCGTGTAATCCAGAATGGGTGAATTTTTTGGGAGAGATT TGGGCACGATTGTTATGTTCCATCCATCTATTTTCATGTACAGAGGAACTAAGATGGTTTTATATAATGTTCTTTAGATT CAATCCCATTAATTAGCAAGTAAACGTGATAATTGAAAAATCAAACTTTTAGTTAAACTACATTTCCAAATTTAAATTTA ATTCCATTTTCTACTAAAATTCAAATTTACAGGTATGAGCACTGAATCAAATTTCAGAACACTATCATCTGTAAATCAAT TAGGCAAGATTATATAGAATCTAGACTCTCTGCAATCCTACAAATCTTGTACAATAGAAGCTGCACTCTGGGTTGTGTGA AAAGCTTATTAGCAAGCATTGGTCATATCCCTTCACCTAACATGTTTCTCAATTGGAAAATGCTTACATTGATGATGGTA GATAATCAGTTACTGCAAAATACATGCAATTAGCCATAAAATATTTATTCATGAATGTTTTCTGCTCACACATCTTCTCC CTTTGACAAATTTAATCACATTCACAATCTAAGCAGTCATTATTTGGTAGAAGGTATGCAAACTTCTCACAATGTTGTAT ATCTAAGAAATCAGCACCATTGAACTCATTCAATGCACCAAAACCCTCAAAAATGCAGAGATTTGGGGAGATCCACCAAT CACAAGTTTAGAGATGCCACTAAAACAAGAATTGGTTGGCAGTGAAATATTTGTGAAGCACCCAACATCTCTATTTGGAT TGTCACTGTATTTTAAGTAATCTAGTCAGTAATTGGATTAATAAAGGAAATAAAAAGATTAGTTATGTAAAGAGAAAAAA GTGGAAAATCAATAGTATAATGAAACATATATAAATTAGATTGCATAGCTAATAGTTGGTTACAAAGAGGTGCAATTTAC ACTGAAATGCAGCAATTCAACTTCTATTAGCACTAGAATAACACATAGCTCAAAATTGAGAATTCAAGATGCAAAATAGG AGTTAACTCACCTGAATAGCAGAAGTGTGGAGAGATAATAGAGAGAACATAATTTACTGGTCTTATTTACACATACCCAA ATCACAATCTCTGCACTCACAAGTAACACAAGTGGCGCTAGCCTCAATGACTGCCCGTGCGACGCGGATGGCGCTGAGCA TATGTTCTTAATTGGCAAGGAGGTGGTTCAGAGATGCGCGTCATAGTGGAGGAGAAGAGGGGTTATGTAGGGTTTGAGAT TGAGGAGAACGAATAAGAATGGTTGCTAGGTTTAATTAGTGTTAAGTCTAAGTGTAGATACCTAAAAATCCCTTCAGTTA AGTGAAAGTTGCATGTCATATAAGAAAGCATTTAACTATGGTGTTTTAAATTTTCAAGAATACTATCTCTCAAAACACTG AGTCTTTGAGATCTCTCAATAACGTCCGACAAGAACATCGTCTTATATCTGAAACCTCACGTCTTATATCTAGAAATAGA GATATCGTCTAACAACAAAAACACGATCGTCTTAGCAAAGTATATATATGCAAGATCTTCTTACTCAAGTTGCTCAATAT TGTCTATGCTATGATCGTCTAACCATGTATAATTTTTAAGGGAGATGCGTCCTTGAAAATATTTGAAGAAGAAGTACTGG ATAAAACTTGTAAGCGGATGAGCCTTGAAGAATACTTGTTTGTTTAGTGAATAATCTTGGTGGGATACCAATGACTGAAT GTAACCCAAGTATTAATGGTGAACTGGGATAAATTTTCTCTCTTGTCCTTTTCTTATCCATTTTTTCTTAGTTATTTACT TTTTATCTTTTCC
CDS sequence (LotjaGi1g1v0220700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCACCGTGACTACACAAGCTTCCGCCGCTATTTTCCGGCCATGTGCTTCTAGGTCGAGGTTTCTTACCGGCTCTTC TGGTAAACTGAACAGGGAAGTAGCTTTTAGGCCAATGGGGTGTCCTCCTTCTACTTCTTTCAAGGTAGAAGCTAAAAAAG GAGAGTGGTTACCTGGCTTGGCCTCCCCAAATTACCTCAATGGCAGTCTTCCTGGTGACAATGGGTTTGATCCTCTGGCA CTAGCTGAAGACCCAGAGAACCTGAAGTGGTTTGTTCAAGCAGAGCTTGTGAACGGACGATGGGCCATGTTGGGTGTTGC AGGGATGTTGCTTCCTGAGGTACTCACCAACATTGGACTCATCAATGTCCCCAAATGGTATGATGCTGGGAAAGCAGAGT ACTTTGCTTCATCCTCAACCCTCTTTGTGATTGAGTTCATCCTGTTCCACTATGTGGAGATTAGAAGATGGCAGGACATT AAGAACCCTGGCAGTGTCAACCAAGACCCCATCTTCAAGCAATACAGCTTGCCCCCAAATGAAGTTGGCTACCCTGGTGG CATTTTCAACCCCTTGAACTTTGCACCAACTGAAGAGGCCAAAGAAAAGGAACTTGCCAATGGGAGATTGGCAATGTTGG CATTCTTGGGATTTATTGTTCAACACAACGTGACAGGGAAAGGGCCATTTGATAACCTCTTGCAGCACCTCTCTGATCCA TGGCACAACACCATTGTCCAAACACTGAGTGGCAACTAA
Protein sequence (LotjaGi1g1v0220700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MATVTTQASAAIFRPCASRSRFLTGSSGKLNREVAFRPMGCPPSTSFKVEAKKGEWLPGLASPNYLNGSLPGDNGFDPLA LAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVLTNIGLINVPKWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDI KNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTEEAKEKELANGRLAMLAFLGFIVQHNVTGKGPFDNLLQHLSDP WHNTIVQTLSGN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 251 | 251 | 2.9E-157 | – | |
| PANTHER | 1 | 251 | 251 | 2.9E-157 | ||
| Phobius | 1 | 100 | 100 | - | – | |
| SUPERFAMILY | 53 | 249 | 197 | 4.58E-61 | – | |
| Pfam | 63 | 222 | 160 | 9.3E-49 | ||
| Gene3D | 63 | 242 | 180 | 4.8E-70 | ||
| Phobius | 101 | 122 | 22 | - | – | |
| Phobius | 123 | 133 | 11 | - | – | |
| Phobius | 134 | 152 | 19 | - | – | |
| Phobius | 153 | 252 | 100 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Photosynthesis, light harvesting | Absorption and transfer of the energy absorbed from light photons between photosystem reaction centers. | ||
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. |
Expression pattern of LotjaGi1g1v0220700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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