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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0221800 |
| Transcript ID | LotjaGi1g1v0221800.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Disease resistance protein (TIR-NBS-LRR class); TAIR: AT1G72930.1 toll/interleukin-1 receptor-like protein; Swiss-Prot: sp|Q40392|TMVRN_NICGU TMV resistance protein N; TrEMBL-Plants: tr|G7K8F2|G7K8F2_MEDTR Disease resistance protein (TIR-NBS-LRR class); Found in the gene: LotjaGi1g1v0221800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:49260794..49266901) extracted from Lotus japonicus Gifu genome v1.2.
AAACAATAGAATATTTTTATTCCATCTCAACCCATTGCATTCCATCAATTCACAAGTTGGGATGGTGGTAATATGCAACT TGCAAGTGTAGATTGCAGTATCTGACTTATCTTCAATTTGCGTTTGGGACGGAGTTACTAGTGGCTGCTTAACCTCATCT TCTGCCATCTACTTGGTGAGGTATGACTGTGGATTTAATTGGGTTCAACAGTTGGTCAATTTGGTGGGCAATGATATAAT ATATTAGTGAGATGGTGGGGTTGTGGTGCATGCCAGCTTCATCTTGCATTTAATTAGTGGATAGTTCCAGTACCTTACAA GCTTTAGTTCTGGATCTCTAGCTTGTGTTCTTTTTTCTGTCTCTGGTTTTCAGTTACTTACCTATTGTACTCTTCCTTTC TGCTCTTGTATTTGGCCTTAGCCCCCCTTGTGCTAAATTTGAATACAGTTTATCTGATCTTTGACTTTCTGGTTGCTAGC TCTCGCTTGCAGAAAAGATTCAAGGGATCTACAAACTCTTGAAGTGAGTAAAACTGCCGTTCACCTCTCTTGTTAAATTT CATTTATTGACTCTGTTAATTATAGCACTGGTTCTCTCAAATATCAATATTGTATTGTTAATTGAAAAATTGTAAATACT ATACCCAGAGTTTGAGATGTGAGTGAGGATATTAATCAGATATTGTTTTCACTATTCATGTTTATTTTCTAATCAAAACC ATTTTTTTTTATTTGTTTCAAGAAAATTAAGATGGGTAGTGTGGATTATTATGTCTTAAATTGAGTATTTTTCAGGTTTA TTAACTTAATTTGTCTAATTAGATATGGTTTCTTTCCAGGTAGTTAGCAAAAATATATACTATAACCGATGGAGATCCCT GCTAAGGTCTGCAACCATATTTTTATCATCAGCTCTACAAGACCAGATTGTTTCCAATTTAAAGTTGATCTCGGTCGAGC TCTGACTGATGCAGGATTTAACATTGTACAGAGTGGTGCAGAATATTCACGATCTGTTTTTGAAGCAATTGAGAAAACAA GACTTTCAATTGTGATTTTGTCTGAAAACTATGCAGAGTCTCCGTGGTGTCAATATTCTTGACTATAAGAAGAAATTTGA TCAGCGGGTTTTGCCAATATTTTATAGAGTAAACCCCACAGATGTAAAGTATCAGAAAAATAATTGTGCTTTTGCCATGG AACGACTGGAATCAAGATATGGAAAAAACTCTCCGGAGGTAAAGAAATGGAGATCTGCTTTGCATCAAATTTCTGAATTA AAAAATGGGAAGTGTTACACGGCAGACAGGTACGTTACTTGCAATAAATTTTACGTAATTCCCCATAATTGATTTGATGC TATATATTATAGTCTACTACTTGTTAAATCGGGTTTTGTTATTATTGTTAGAAGCCCACACTGGTTAGAGATATGACTAA ACAAGTGTTTATAAAGGGTAGAGCAGTCTTCAACTCTTGAGCTAGCTTAAGGGTTGAGGTAGACCTCCCGAATTCCAATA TGGTAGGGTAGAGCAGCACTCAACTCTTGAGCTAGTTTTTGGGTTTTTTATGATAACTTTTTTACTTGTTATAAATTATA ACTGTTTTTTTTATTGAATAGAAAGTACAAAGAAACAAAAACCGTGTCCATATATATAAAACTGAATTGAGAAACCTTGG CTTGCATATGCTTTTATAGGAATCAACGTGAATTCATTCAAGAGATTGTAGAAATAGCCCATGAGCACATAGGTTTCTTG TCCACCACAAGATCTGCAAAGTCTTCATGCCAACTCTCCACTACCAGCTATGGAATTACAAGTTTACGGTCCTTCCCTAC TGGAACTGGAAACGAGTATTATTACTATTTCGACTCTATAAAAGAGGCTTCAAGAAAACTTCTGGATGCATTGCAAGATG ATACTTGCTATACTATCGGAGTATGTGGAAGGAGGGGCTCTGGTAAAACATCATTAGTGAAAGCTGAAATAAGCAGCTAC GGAAAGATTTTTGATAGAGTTATATTTCCCAATGTCTCTAAAAATCAAGATATCAGGAGCATTCAAGATGCAATTGCTAA TTCATTGAATGTGTATTTTGAAAAAAATGACAGAGATGCTGTAAGAATAATGAAAATGTTTTCGAAAATAGAAAGGATGG ATGGAACAACTCTTGTCATCTTGGATGATTTTCCAAGGGAGTATACACCTCAGGAGCTAGGTATTCCTTATAATAACAAG CACTGTAAGGTCATTTTGACCACACGTGATGAATTAGACTGCCCCGCTATGGGGTGCAACCACTCAATTCTTCTGAAACC CTTGTCTAATGATGAAGCTTGGACGTTGCTACAACATCTTTCAGGTGTTAACTCGCAACTTGATCTGCTTGATGTGGCGC GAAATGTTGCTTTCAAATGTAATGGTTTGCCTGGTTTGATTAAAGATGTGTCGTCTTCCTTAAAAAAGAAGCTCAATATT GACCAGTGGAATGAATCATTAATCAGTTTAAGCCACTCAACCGCTCGTTATCAGATTTTTATCAGTTTTAGAGGGGAGAC TCGTCATGTTTTTACAAAGCATCTCTATGATGCTTTGTGCCAGGAGGGATTCAAGACATTCATGGATGACAAATCACTCG AGGGTGGTGTTCCAATTGAGAAACTTCTTGATGACATTGAAGAATCAAGGTTTTCAATCGTTATTTTATCTCCAAACTTT GCAGACTCTGAATGGTGTCTTAGAGAACTTGTTCAAATTCTTGACTGTAAAGATAAGGAGGAGAAGAAGCAATTAGTTTT GCCAATATTTTATGATGTGGAACCTGGACATGTAAAGTATTTGCAAAATAGTTATGGAGAAGCCATGGAAAAACATGAAA AGAAGTTTGAACAACATCCTGAGATATTACAGAAGTGGAAGAATGCTTTGCGTGATATCTGTAAGCTGACCGGATTCAAA AAACCTGACGACTGGTACGCAATATACTTTTAAGAATTGGGATTGTCTAAATCATCTAAGAAAATGTTGGGTAAAACCAT CCGTCATAGGTAGTCCAATAATATTTTGACATGTCATGACTTATAATTTTCTAAAACAAGTCAAAATATTATTAGGCCAT CTAAGCCTATGATAATTTAACCCAAACTTCAATTTATCTTTAGTGATTTAGACAACTCCTTCAAAATTACAAAATTTATT TTAAAAACCTCTCTGTTTTTAGTAGGATTTCATAATTAATCTCTTTTGTTTGAGTTTGAATAAATAAATCGAAAGGTGTT GTATATACTTTGCAGGGCCAGAGATGAATTTATAAAAAGGATATTAAGATTTTCTTGTGAAAATAGACATCGCCTGCATA TACAATCTATGTATATGAACTAGAAAGACTTCAGGCAGGCAGGACAAGCAAGCTCGTGTGCAATGTGTAAAGAGGCTGAG GAGAGCACCAACCACTTGCGTTTTAATTGCAAATTTGCATGGATAGTTTGGATGAAAAGCTATAGTTGGCTAGGAATCCA AATTGTCTTGCCCCAACATTGCAGCAGTCACTTTAAACAACAGTGGCGAGAGGGGAACATTAGCAAACAATTGAATTGGT GGGTAATGTGGTGCACTTGCATATTGTCCATTTGGCTAGCCAGGAATGAGGTAGCTTTTAAGTCAGCGGAGGCGGATGTG GATAAGGTAGTTGATTCAATTCAGTTCAGATCCTGTAAATGGATTCGATATAAAGTGAAGGGTTTCTTGTACTCCTTCTA TGAATGGTATATGAACCCCGTCTTATGCCTGAAAGGGACCATTTAACACCACTTGGAATGGGCTCAGGATGTTGCAGGGG GAGCAGCTCGGAACCAGGATCTTCTGCAGATTGCAAAAGAAAATGAAAGAGAACTAGAAGTTTAATCCAGAAGAGTTTGG CTACATATTCTGGATCAGTTGAAGGGCATTGGAAACACAATGAAACTATGTTACAAGGAAATGCTGTGATGTCAAGGACC TCCTTAAATGCTAGAAGAACCTTGTATTCGAGATTCTGGTGGGTGATTGCAATTGTCATTGGAACTTTGTGAAGGCTGGT CCACATGTGCTTTTGAACGAGACAATTAACTCGGTGGAGAAAATAATGCTGTTTCTGCTATGCTGTTTGGGGAAAAGGTC TGATGTAGATAGTTGATGTATAATAGGATCAAAAGAGAGAAAAGGTAGAGGGGAAGGGGATTTATTGAATTGGTCTTTAG CTATGTTGCTGTCATTTATGTTTTGCTCTTTTATTTTCCTGTTTTCTGCAACTGTTGCTTCTTGGCTTTGAGTTAGCTAA GTACCTTGGTTGCTTTTTATGCTTTTCCAATTTGTATTTGGGTTTAGCACCCCTTGTGCTTCCTTATATGAATTGTTTGC CTTCCAAAAAAAATACTAGAAAGACTTCAGCATCTCTTACAAAGTTACAAATGAGTGCAGCTCAAGGTAGAACTGGTTGA AAATAGTTACTACTCATAAATGGACTGTGATAATTTATTTTGGAGATTTTTCGCAGAGTAATGATTTATCCTCTTATTAG TACTTATGCTGGTGCAATGCACAAATAATATTTTCCTTAAAGATTATAAAGAATCATTTTTTTTTGTGTCGTGTATTGGC CAAGGTTATAGAAGCAATTGCCTTAGGCTACAGAACCTGCATTGTGGAGATTACTATGGGCTATGCAGCAAGAGATTATG GAAGCAGAAGCCAGAGAAGCTCTGTGGCGTGAGGAGTTGGTTGAGGAGATAGCAAAAGGTTGGAGGGTTGAAAGAACTTG AAGAACCAAGCACGAAAGAGGAAGTACTCAAGTGATGCTTCATCAATGTGTATATAAAGTTCATTATAGGAGCAAATTTT TATGCTTCATTTTTAAACATGAAGCATAAAAATCTCATCTCCTTTAATCCGCCACCCCTTTGCTTCTCTTTTTGTCTTCT GACTCCTTCCCCTTCGATTCGTTGGACTGCTGGAGCAACAGAACGGGATTCAGGGTGCTATTTTTAACTGCAAGAGGTCC ATTAATGTCTCCAGAGGTAAATTGTTCTTTTCTCTTTCGTCCACTAAGCTGGGGACCATTTTTTTTTTGTTTATTGTTAT TATTCTTTTGAAGATTCTTTAATTCTGTTGACATAATTGCACATTTGTACAAGCTTAGTGAATTACGAATAGTCTAATAC TATTGGTTGCCTCATATTTTTACCTTTTGTGTATTGAATTTGGGAAAATCAAGCTCCATGCTTTGCATTTTCAGATGACA GTGTATTCTTCCTATGAAAGCCTATGAATTGTAGTGTATCTACTTAGATGATCCTTTGGATGCTATCCTTGCCCGCCCAC ATTCCTACTGAGGTCAGCTACTCCTTTTATTAATTTATCTTTTGGGGAGTTTTACAATTTAGTTTTTGAAATTGTGAATT TGTGCCCATGCATTGGTAGTTTGGTTTTTAGGTGGAATTGAAAAAATTTCTACTTTAAAGGGCATTGTCTCTATAAATGA ACAAATGCCATGGCAGGTTGCATGAAAGTGGACACAAGCTAATACATTTAGAGCCTGCCGCACCTTACATTGAGGTGACC TCATTGTGAAACAAGGTGCCTTTCTTTCTTCATTTTTCTTTTAAATATTGGCAGCAAACTGAATCTTATATGGATTTTCA TATTGACACATCCTTAAATGTAAATTACATCCCAGCGATGCTACTAATCCCCTGCTTGGTGGATTCTTAAATTCAATAAA CTCTGAAGGAATGTTGGGTCAGTAGCTACCAAGTGCGTTGTCCATGAAAATGTATGAAGGAATGAAACACCATCAATCAA TGGATTCAAAGCCATCTCAAGCATTGTTTTACCTGAAACAATGAAGGTTATATACTGAGTTAAAAGAATTTAGCACATGA TAGAAAGTTTGTGTGTACAGATTTGGTGACTATGTTTGTACTTATTCAAATTGCTAAAGGAAGGCTTTTCAAGGTACATT TTGTGTGTGAAAGTATTTGATGTAATACTGAGCCATCGTTGAAGAATTTAATTTAATTGAAATGAAAAATGGCCGCACTA ACAGAGTCATTGTGGAACATTTGCACTA
CDS sequence (LotjaGi1g1v0221800.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAGAGTCTCCGTGGTGTCAATATTCTTGACTATAAGAAGAAATTTGATCAGCGGGTTTTGCCAATATTTTATAGAGT AAACCCCACAGATGTAAAGTATCAGAAAAATAATTGTGCTTTTGCCATGGAACGACTGGAATCAAGATATGGAAAAAACT CTCCGGAGGTAAAGAAATGGAGATCTGCTTTGCATCAAATTTCTGAATTAAAAAATGGGAAGTGTTACACGGCAGACAGG AATCAACGTGAATTCATTCAAGAGATTGTAGAAATAGCCCATGAGCACATAGGTTTCTTGTCCACCACAAGATCTGCAAA GTCTTCATGCCAACTCTCCACTACCAGCTATGGAATTACAAGTTTACGGTCCTTCCCTACTGGAACTGGAAACGAGTATT ATTACTATTTCGACTCTATAAAAGAGGCTTCAAGAAAACTTCTGGATGCATTGCAAGATGATACTTGCTATACTATCGGA GTATGTGGAAGGAGGGGCTCTGGTAAAACATCATTAGTGAAAGCTGAAATAAGCAGCTACGGAAAGATTTTTGATAGAGT TATATTTCCCAATGTCTCTAAAAATCAAGATATCAGGAGCATTCAAGATGCAATTGCTAATTCATTGAATGTGTATTTTG AAAAAAATGACAGAGATGCTGTAAGAATAATGAAAATGTTTTCGAAAATAGAAAGGATGGATGGAACAACTCTTGTCATC TTGGATGATTTTCCAAGGGAGTATACACCTCAGGAGCTAGGTATTCCTTATAATAACAAGCACTGTAAGGTCATTTTGAC CACACGTGATGAATTAGACTGCCCCGCTATGGGGTGCAACCACTCAATTCTTCTGAAACCCTTGTCTAATGATGAAGCTT GGACGTTGCTACAACATCTTTCAGGTGTTAACTCGCAACTTGATCTGCTTGATGTGGCGCGAAATGTTGCTTTCAAATGT AATGGTTTGCCTGGTTTGATTAAAGATGTGTCGTCTTCCTTAAAAAAGAAGCTCAATATTGACCAGTGGAATGAATCATT AATCAGTTTAAGCCACTCAACCGCTCGTTATCAGATTTTTATCAGTTTTAGAGGGGAGACTCGTCATGTTTTTACAAAGC ATCTCTATGATGCTTTGTGCCAGGAGGGATTCAAGACATTCATGGATGACAAATCACTCGAGGGTGGTGTTCCAATTGAG AAACTTCTTGATGACATTGAAGAATCAAGGTTTTCAATCGTTATTTTATCTCCAAACTTTGCAGACTCTGAATGGTGTCT TAGAGAACTTGTTCAAATTCTTGACTGTAAAGATAAGGAGGAGAAGAAGCAATTAGTTTTGCCAATATTTTATGATGTGG AACCTGGACATGTAAAGTATTTGCAAAATAGTTATGGAGAAGCCATGGAAAAACATGAAAAGAAGTTTGAACAACATCCT GAGATATTACAGAAGTGGAAGAATGCTTTGCGTGATATCTGTAAGCTGACCGGATTCAAAAAACCTGACGACTGGGCCAG AGATGAATTTATAAAAAGGATATTAAGATTTTCTTGTGAAAATAGACATCGCCTGCATATACAATCTATGTATATGAACT AG
Protein sequence (LotjaGi1g1v0221800.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQSLRGVNILDYKKKFDQRVLPIFYRVNPTDVKYQKNNCAFAMERLESRYGKNSPEVKKWRSALHQISELKNGKCYTADR NQREFIQEIVEIAHEHIGFLSTTRSAKSSCQLSTTSYGITSLRSFPTGTGNEYYYYFDSIKEASRKLLDALQDDTCYTIG VCGRRGSGKTSLVKAEISSYGKIFDRVIFPNVSKNQDIRSIQDAIANSLNVYFEKNDRDAVRIMKMFSKIERMDGTTLVI LDDFPREYTPQELGIPYNNKHCKVILTTRDELDCPAMGCNHSILLKPLSNDEAWTLLQHLSGVNSQLDLLDVARNVAFKC NGLPGLIKDVSSSLKKKLNIDQWNESLISLSHSTARYQIFISFRGETRHVFTKHLYDALCQEGFKTFMDDKSLEGGVPIE KLLDDIEESRFSIVILSPNFADSEWCLRELVQILDCKDKEEKKQLVLPIFYDVEPGHVKYLQNSYGEAMEKHEKKFEQHP EILQKWKNALRDICKLTGFKKPDDWARDEFIKRILRFSCENRHRLHIQSMYMN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 5 | 99 | 95 | 3.1E-16 | ||
| PANTHER | 7 | 94 | 88 | 2.5E-75 | – | |
| Pfam | 8 | 91 | 84 | 4.8E-6 | ||
| SUPERFAMILY | 12 | 69 | 58 | 9.16E-5 | ||
| Gene3D | 131 | 284 | 154 | 3.3E-15 | – | |
| SUPERFAMILY | 131 | 350 | 220 | 9.84E-34 | ||
| Pfam | 146 | 356 | 211 | 3.1E-26 | ||
| Gene3D | 350 | 523 | 174 | 1.1E-53 | ||
| SUPERFAMILY | 350 | 498 | 149 | 3.01E-37 | ||
| PANTHER | 350 | 521 | 172 | 2.5E-75 | – | |
| ProSiteProfiles | 355 | 496 | 142 | 24.141 | ||
| SMART | 356 | 496 | 141 | 9.1E-41 | ||
| Pfam | 357 | 514 | 158 | 3.4E-35 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Biological process | Signal transduction | The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell. | ||
| Molecular function | ADP binding | Interacting selectively and non-covalently with ADP, adenosine 5'-diphosphate. |
Expression pattern of LotjaGi1g1v0221800.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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