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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0230700 |
| Transcript ID | LotjaGi1g1v0230700.1 |
| Related isoforms 6 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pectate lyase; TAIR: AT5G63180.1 Pectin lyase-like superfamily protein; Swiss-Prot: sp|Q93Z25|PLY22_ARATH Probable pectate lyase 22; TrEMBL-Plants: tr|A0A1J7GII6|A0A1J7GII6_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0230700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:54020768..54024469) extracted from Lotus japonicus Gifu genome v1.2.
GCATTAAATCTCTTTATATACACCCCCTCCTATGCACGTTCCTTCTCAACTCTTTCCTTTCTCTCTATCTTAAGCACTCA CTCTCTCACTTATCAAAGAGAGGACATGACAAGCATTCTACTCTCTTTGGTAATCTTGCTCTTCTCTTTTCTCATTCCAA TCCTCATTTCCTCCTCACATGTTCAAAACCCTGAATTGGCAGTGCAAGAAGTAAACAGGTACCACCACCTATCCATGCTA TACACACTGACATTACATGTATGCGACCATCCAATATTGTCATCTTGCTATAAGATAGCACCACTTTTGTTATTGCAAAT TCACCCAAAAGGAATAAGAATTACATCATTTTAATCACTTTCAAGTTCTGGTGATCCTATATTATATGGGATCCTTTTTA ATTTAATTTAGATGATTGTGCTATCACTAAAATACTCATTTCTAAATTCATTATTATCAGTCATAGTCATGACATGAGAT TTATTCCATTAAATAATACTAATTAATTAGTCAATTACAAATGTAAGAAAAAAAAATTCAATACATTTAGGATATATCTA GTGTATAACATAATGCACAGCACAATACAATAATGACACTTGAACATACAAGGAGTACAAACATTCATGAGACACTCTAT TTTCCTTTCTATCTATCTCTCATTTCTTACTTACATTGCATCAATTATTTCTTATTTTTCTCTTTTTTCTCACCATCGGT GTTTGTTAGTGTCTGCACCCTACAGATGTTTATAAATTAAATCGTTGTGGTTAACTTGAAAATTATTGCGGATTAGCTAG AAGTATATTAGAAATAAAAACTTTGTATCAATAAATTTATGAAAATTTTTGGAATGCAGGAAAATCAATGCCTCTATAGC TAGGAGGAACTTGGGGTACCTATCATGTGGGAGTGGAAACCCTATTGATGATTGCTGGAGGTGTGACACCAATTGGGAGA ACAATAGGAAAAGGCTAGCAGATTGTGCAATAGGATTCGGCAAGAACGCAATTGGAGGCAGGGACGGCAAGATCTACGTA GTGGACGATGCCAGTGACGACGACCCCGTGACCCCAAAGCCGGGTACGCTCCGGCACGCGGTGATCCAGGACGAGCCGCT CTGGATCATCTTTGCCGGAGACATGGTGATCAAGTTAAAAGAAGAGCTGATCATGAACTCTTTCAAAACCATTGACGGCA GGGGTGCGAGCGTGCACATTGCTGGCGGTCCTTGCATAACAATACAGTACGTGACCAATGTGATCATTCATGGGATACAC ATCCATGATTGCAAGCAGGGTGGGAATGCTATGGTGCGGGACTCCCCACGACACTATGGGTGGAGGACCATATCAGACGG TGATGGCGTGTCGATCTTTGGAGGGAGCCAGGTGTGGGTGGACCATTGCTCGTTGTCGAATTGCAAGGATGGATTGATCG ATGCGATTCATGGGTCCACCGCAATTACCATATCCAACAATTACATGACTCACCATGATAAAGTCATGTTGTTGGGTCAC AGCGATTCTTACACAGATGACAAGAACATGCAAGTCACAATCGCTTTCAACCACTTTGGTGAAGGTCTTGTTCAAAGAAT GCCAAGGTAAAAAAAAAATCATTTTTTATTTCCATTCCCAATTTAACTCCGCAATTACGGAATATCTTTGAAAAAAAAAA CCTACAATTTGTCAAACTTGTCAAAAGTCTAATATAATATTAAATACTAAACTTCATTGCATTTTTGTCCATATAATTGC AGCAACATACATGTGATTTTAGTTTCAACGGCTAAGTTATTCTATTTTCAAAATGAACAAATTTTATCAATGATGTTAAC TTGTTGCTCAATAACTAATAAAAAATGACATTTATCACAATTTTTTTATGGTGAAAATGACATAGATTAGCTCAGATTAT TATTCACAGAAAAAATTTGTGATCCACATCAACATTTTTCGTTAGTTTCTGATAAAAAGTTAACATTTAGACTAAATGTA GATCAATTGTAAAAATAGAATAACTTAAGCAATTGAAACTATGGCTAAAACTATAGTTTGGAACCAAAATCACATTTTTC TAAAACTATGGTGATCCGAGTGTAATTAAGCTTTAATATTAAAATAAGTATAGTGTAAACTTTATATATCTTTTGCTATT CTAAAAATTTGATTAATTGCATCTATGAACATTGAATTGACATAAAAATTACTCATAGCGTCTACCCTAGTGCTCAACAA GAAATATTATTGTAATAACATGGGCCGTCCATTTTCTTTTAAGAAAAAGGTGACAAAAGGGAAAAAGGAAAGGGACATTG ATCAATGTGGGACTGAATGGGTTGCTTTTTGTCATTTTCTCTCAGTTGCATGTTACTTTTGTGGGACCAACATTGCTTAG GATTGAAAAAAATTACTTTGCGAAATTTGCAGGTGTAGGCTTGGATACTTCCATGTGGTGAACAATGACTACACTCACTG GGAAATGTATGCCATTGGAGGAAGTGCTAACCCCACCATCAACAGCCAAGGCAATAGATTTGTTGCACCCGATGACAGAT TTAGCAAAGAGGTAAAACAGAGTAATAATTTAGCTCTTAAATCTCTTAAACCGTTGTCCCTAATAAAATAATTAAGAATG CTATAATTAAAGATCAATGATGTTGATTTTCCAGAAAATGAAAAATGGCTGAAATTGTGCAGGTAACAAAGCATGAAGAT GCCCCAGAGAGTGAATGGCAGAACTGGAACTGGAGATCAGAAGGGGACATGATGGTAAACGGTGCATTTTTCACAGCAAC GGGTGCTGGAGCTTCTTCTAGCTACGCCAGAGCTTCAAGCTTAAGTGCAAGACCATCTTCCCTTGTTGCTTCCATAACAA GTGGTTCTGGAGCACTTGACTGCAAGAAAGGTTCTCCTTGCTGATAATGACTCATCAAGCAATCAAATCCATTTTGAAAG ATCCAGTCAATCCGAAAATCAGTAAATGATGAAAATTAAATCTCCCTACAAAAGAAAAGGGAGGGAAAGAATTTTAAAGG TCTATGTGGTGGTGTATGATCTCTAGCTTTAGATATACTTTTACTTATTGGATTTCCATATCTTCCACTCTTTTCCTTTT CCCCTTTTTTTTCTTTTCTTTTCTAGATTGTTATCTGTGGTTTGTCTTTTCTTTTTTTTAGCTTTATGATTTTCCCATGA TTACAACCTCCACCTGTTACTCTTATATATAAGCCAAATCATTAGAAGAGTTCTCAGGATGGTCTAATGCTCTGTTTGTT TCAAAGGGAATATGGAAAGAATGAAGTGGAATGGAAGAATTATGACTGGAAAATCAATTTTCTACTAGGTTGGATTAGAC AGACAAATAGATGGAAAGGAAAAATTGTACACAAATAGTATTGTGTCCGAAGTCCCCTCACTCTTGTGGTGAAAATGAGC ACTGAAGAAAGAAAGAATGAATTCCATTTGTACCCCATCTAAGTATCTCTGGATGTGCTGATGTCTTGTTAGTATAGGAG TAGGTTATTGTGTTTTGTTTAAATAACCATTCATTCACTAATCACTTTGATCCTTTTTTCGGTTGCACTTGGGATATATT CATTTTGATCTGTTTAGTGCATCATAGTTGTAGGCAATTTTTAGTTATAAGGAGGGACTAAGCCCAAAACAAAAAGAGAA CTACACAATAATAGAATTTAAG
CDS sequence (LotjaGi1g1v0230700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACAAGCATTCTACTCTCTTTGGTAATCTTGCTCTTCTCTTTTCTCATTCCAATCCTCATTTCCTCCTCACATGTTCA AAACCCTGAATTGGCAGTGCAAGAAGTAAACAGGAAAATCAATGCCTCTATAGCTAGGAGGAACTTGGGGTACCTATCAT GTGGGAGTGGAAACCCTATTGATGATTGCTGGAGGTGTGACACCAATTGGGAGAACAATAGGAAAAGGCTAGCAGATTGT GCAATAGGATTCGGCAAGAACGCAATTGGAGGCAGGGACGGCAAGATCTACGTAGTGGACGATGCCAGTGACGACGACCC CGTGACCCCAAAGCCGGGTACGCTCCGGCACGCGGTGATCCAGGACGAGCCGCTCTGGATCATCTTTGCCGGAGACATGG TGATCAAGTTAAAAGAAGAGCTGATCATGAACTCTTTCAAAACCATTGACGGCAGGGGTGCGAGCGTGCACATTGCTGGC GGTCCTTGCATAACAATACAGTACGTGACCAATGTGATCATTCATGGGATACACATCCATGATTGCAAGCAGGGTGGGAA TGCTATGGTGCGGGACTCCCCACGACACTATGGGTGGAGGACCATATCAGACGGTGATGGCGTGTCGATCTTTGGAGGGA GCCAGGTGTGGGTGGACCATTGCTCGTTGTCGAATTGCAAGGATGGATTGATCGATGCGATTCATGGGTCCACCGCAATT ACCATATCCAACAATTACATGACTCACCATGATAAAGTCATGTTGTTGGGTCACAGCGATTCTTACACAGATGACAAGAA CATGCAAGTCACAATCGCTTTCAACCACTTTGGTGAAGGTCTTGTTCAAAGAATGCCAAGGTGTAGGCTTGGATACTTCC ATGTGGTGAACAATGACTACACTCACTGGGAAATGTATGCCATTGGAGGAAGTGCTAACCCCACCATCAACAGCCAAGGC AATAGATTTGTTGCACCCGATGACAGATTTAGCAAAGAGGTAACAAAGCATGAAGATGCCCCAGAGAGTGAATGGCAGAA CTGGAACTGGAGATCAGAAGGGGACATGATGGTAAACGGTGCATTTTTCACAGCAACGGGTGCTGGAGCTTCTTCTAGCT ACGCCAGAGCTTCAAGCTTAAGTGCAAGACCATCTTCCCTTGTTGCTTCCATAACAAGTGGTTCTGGAGCACTTGACTGC AAGAAAGGTTCTCCTTGCTGA
Protein sequence (LotjaGi1g1v0230700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTSILLSLVILLFSFLIPILISSSHVQNPELAVQEVNRKINASIARRNLGYLSCGSGNPIDDCWRCDTNWENNRKRLADC AIGFGKNAIGGRDGKIYVVDDASDDDPVTPKPGTLRHAVIQDEPLWIIFAGDMVIKLKEELIMNSFKTIDGRGASVHIAG GPCITIQYVTNVIIHGIHIHDCKQGGNAMVRDSPRHYGWRTISDGDGVSIFGGSQVWVDHCSLSNCKDGLIDAIHGSTAI TISNNYMTHHDKVMLLGHSDSYTDDKNMQVTIAFNHFGEGLVQRMPRCRLGYFHVVNNDYTHWEMYAIGGSANPTINSQG NRFVAPDDRFSKEVTKHEDAPESEWQNWNWRSEGDMMVNGAFFTATGAGASSSYARASSLSARPSSLVASITSGSGALDC KKGSPC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 23 | 23 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 26 | 26 | - | – | |
| SignalP_EUK | 1 | 23 | 23 | - | – | |
| Phobius | 1 | 3 | 3 | - | – | |
| Phobius | 4 | 15 | 12 | - | – | |
| PANTHER | 5 | 406 | 402 | 2.9E-248 | – | |
| PANTHER | 5 | 406 | 402 | 2.9E-248 | – | |
| TMHMM | 5 | 22 | 18 | - | – | |
| Phobius | 16 | 23 | 8 | - | – | |
| Phobius | 24 | 406 | 383 | - | – | |
| SUPERFAMILY | 36 | 400 | 365 | 2.04E-103 | ||
| Gene3D | 57 | 399 | 343 | 6.6E-125 | ||
| PRINTS | 80 | 97 | 18 | 3.1E-84 | ||
| PRINTS | 104 | 129 | 26 | 3.1E-84 | ||
| SMART | 132 | 329 | 198 | 8.3E-102 | ||
| Pfam | 139 | 323 | 185 | 2.0E-21 | ||
| PRINTS | 140 | 156 | 17 | 3.1E-84 | ||
| PRINTS | 204 | 225 | 22 | 3.1E-84 | ||
| PRINTS | 284 | 303 | 20 | 3.1E-84 | ||
| PRINTS | 306 | 325 | 20 | 3.1E-84 | ||
| PRINTS | 348 | 372 | 25 | 3.1E-84 | ||
| PRINTS | 377 | 400 | 24 | 3.1E-84 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0230700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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