Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0231000 |
| Transcript ID | LotjaGi1g1v0231000.2 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Photosystem I assembly protein Ycf3; TAIR: AT5G63200.1 tetratricopeptide repeat (TPR)-containing protein; Swiss-Prot: sp|Q6PGP7|TTC37_HUMAN Tetratricopeptide repeat protein 37; TrEMBL-Plants: tr|V7AWL0|V7AWL0_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0231000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:54157898..54163341) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCGGATAAGCTGGGAGGAGCAGCAGCTGAACAGAGCTTGAACTCGAAGAGTTCACACCAAACGACTTCGAAGCTCGT CGTTTTGGCTGACCTCAACGTCAATCCTCCCGAAGCCGAAGCCGACGACGACGATTCTTCCCTTCTCCCTCCTCCCCAAA TCATTACCAGGTTTTCTTCCTCTCATTTCACTTCCATTTTTCTTTTTCCATTATTTTTTCTTTCTTATTCAGATTGAATT GGAATTTAGGAATGGAATTGTATTTATACACCAGTGTTTGCAAACTGATGCAACGAATCATGTAATGTAACTAACGCAAT TGCTAACTGACTAACAAACTAACTGATTAACTTTAAAAAATAACTTAATTGTTGTAAATTGTAAAAGGACCTTTGGAATC ATAACTTGTAATTTTATGAAACATAGTGTATGGCAATGAGGTTGTTGCTCAATTGGCAATTTCTTTTAAGACTTGGGTGA GATCCAAAGCTGGCTTACATTGAAATCCATTTTGTCATAAAAAATCCATTTTCTTGATCATTAATCATTCAGTCGTCCCA CAGTTTTTCCAGAAAAAATGTTATTGAGTTGGTTGGAGTGGGTGGGACCATAGTAGTCGAAATCGGGAAGGGGGATGTAA ATCGTAAAATCGATAAGTCATAAGATTTAGTACATTTCCTATATATATGTGCGTGCGTGCATATAAAATAGCACAAATAA AAACAGAATGGAGAGCAGAGAAAAAAAAAACACTAGAACAGAGTAAACAGCCAGTTTAGGGAGTTGGTGTGCAATTTAGC ACTGATTTAGCCGTGAAATTTGCAGAGATTTAGGGAGTTAGGGTGCGATTTAGCACTGATTTAGCCAAATGCGATTTAGA TGGCGATTAAATCACAGGGTGCTCTCGAATCGTAAAATCGTACAATTTAGCGATTTAGATCGTGATTTTGACTACCATGG GTGGGACCTGCTACTCTCAGATGAATTATCTAATCAGTGTTATCAAATAGCGGCTATAGCGGCGCTACGCCGCTCTCCGC TATAGCATAGCGGATTTTTGGCTAATCGCGACGGCGCTATTGCCCACTATAGCGTGCTATTCCCGCTATTCGCTGCTAAA TAGCGGCCGAAATAGCGGATTTTTGGCTCACCCCGATGGTCCGCGATCGCGATTTGACAACACTGATATTAATACTGAAT ATAGTTCTGTTGCTTCCTGTCATTTATTGATTTTTTGCATTCATGTATAGGTTGACAAATGACGAAAACAGTCAAGATAA GAGTCTGTTGTCCAAAGACACTGATAGTACTGAAGGCGAAGGTAAAAAGTCGCACAAACTGGGGAAATGCCGCTCCAGAC CTAGCAAGACAGATTCTCTTGATTGTGGGGGTGATGCAGATGTTGATCAACATGTACAAGGAGCTCCTTCATCCCGGGAG GAAAAAGTTAGCAGCATGAAGACTGTGAGTTCACTGTCACAAATCATTAAAATATTCCCTTTTATCTAAACTATCCCACT GCTGAACTCAAAATTTGTCAGTTAATCAGTCGAACTGTGCTTAAGGATTTCAGTTAGTGAGTCAGTCAGTGTTTTCAAAT ATATGCCATGGCGGGTTTTTGGCTCTCCACCATGGCCCATATGCCACCATAATCCGCATCATTTTTTGTCAAATATGGCG GGTTCTGGCTCCGCCATTAACAACCTTGGAGTCAGTCCATCTTTCCTAATAAAAATATTACCTTTTGTTGTAAACACGGA ATCAAAGACCTCAGAATATCTTTTATGAATTATTTTTTTCTGTTTGTTGAAGTATTTAGGCAATCATTATGTTATCTGGG AAATCAGAACAGAAATATTTCGTCTGTATTTTTTTTCCAGTAAAATACATTAGTAGATGGATCATATGTAGGAATGCAGA TGGAGATTTTTTTTTTTTTCACTCATGTTTTTCATGATTCATTGAAATATTTCTAGCCATCCAGTGTAGGATCTGATGGA TGCCTGTTGAAGATAAAGGCATTTTGCTTGTTCCTATGTTATCATCTAAAATGAAATTCCTAATATTTTTCTCAAGTGGT GAACATGAATAGTTGATGTAACTATTATGTATTGTAACGGAAAATGCTGTATTTCTTGGGACAAAGTGAGCCAGTGAGGC ACCAAAGCTAACATATCATGTCCCTCTGTCCTTCATTTCTATTTGCAGAATAGCATGATTTAGATATCAACTCAATTCAG ATGATTTATGCCTTAACTAATGTCTCTCAATTGGTCATTTATTGTTTTGCTTATCGTTTCTCATGATGGGGTTTATTCTA TGACCATATTAGGATCTATGACCATGAATCATGTTGAATACAAGCTGTTCAATGAATAACTTTACCATAAGTGAGTTTAG ATTGCTTCCTTCTTATCACCATATTTCTCTGTTTGGATCAATGGTTTTTTGTGGCAAAGAGGGAGGATGGAAAACCAAAA ATACAATATTGACACATTAGTAATATATTTTTATGGTTGGCCATTGTTATTGTTTTTGTTATAGACTTATTGTTGTTTAT CATCATTATTGCTGCTGTTATTGTTTTTGTTTATTACTGACTACATATGTTCATGCTTGTAGGGCTTGATTCATGTTGCG AGGAAGATGCCCAAAAATGCTCATGCTCATTTTATACTTGGCTTGATGCACCAAAGATTAAACCAGCCTCAAAAGGTTGT CCTTTAACATTCACGTGTTCGATTTTGTACATATATGTTTGCTCATTGAGTCATTAATTTTTTTTTGCAGGCTATACTGG TTTATGAGAAGGCAGAAGAGATCTTACTCAGGCCTGAGACTGAGATTGAGAGGCCAGATTTGCTTTCTTTAGTTCAGATT CACCATGCCCAGGTGCAATAACCTTGATTTGATAGATTAATGATTCTAATCTTTTGGTTCATTGACATTTTTTATAATCC TTATAGTGCTTGATACTCGAAAGCTCATCAGAAAACAGTTCAGATAAAGAACTCGAACCTCACGAACTTAAGGAAATTCT TTCTAAACTTAAAGAGTCAGTGCAGTTTGATATCAGACAGGCAGCTGTATGGAATACACTAGGTTTTATCCTTCTTAAAA CTGGTCGTGTGCAGGTACAAGTACCTTATGCTCTCTTCCTTATGCTTTTATGTTCTCAAGGCATATATGATGTTTCTTTC AGTTTCAGTATTAGATGTGAGTCATGTGACTACTTTTCCTTTTCCTTCACCAATGTGAACTTCAAAAACATATGCAGAGT GCTATCTCAGTTTTGTCATCGTTGTTAGCCATTGCTCCAGAGAACTACGATTGTCTAGGAAATCTTGGGATAGCTTATCT TCAAATGTAAGTTTGAATGGAAATTGCTGTATATTTATTACATTGAATTATTTTGGAAATGTCATTTGTGTCTTCAATTG AAAAGAGTTTATATGTGTCTTTACTCCGTGCATATCGTTCCTCAGTACTGTTACTGTGTTACCTTGCAGTGGGAATTTGG AATTATCCGCAAAATGTTTTCAGGAGTTGATTCTAAAAGACCAAAACCATCCCGTAGCTTTGGTCAATTATGCTGCCCTT CTTTTGTGTAAATATGCTTCAGTAGTAGCAGGTACTATAAAGTCCATGCGCTCAATTTTTCATTTGTCTATTATTAAGTG GTTGAAGAAGTTTTTGTAATATGGTTTTCATTTTTCATCATATTGAATCTTCATTATTTCCAGGTGCTGGTGCAAGTGCG TCTGAAGGTGCTTTAGCAGATCAGGTGATGGCTGCTAATGTTGCTAAGGAATGTTTGTTAGCTGCAATTAAAGCAGATGT CAAATCAGCCCATATCTGGGGAAATCTTGCCTATGCATTTTCTATTAGTGGTGATCATCGAAGTTCCAGCAAGTGTTTAG AGAAGGTGCTCATGGACCCTTGCTACAGTCATTTATAACGTATTTATTGTGAGGTTGTTCATTGGTTTTCTGGTCCTTGT TTTTGGTGGAGATGTTTTGATCTTTGATTCTCTGCAACAAATTTTTTGTCATCCTTTCTTATGCGTTATGTATCATAATT AATATTAAAATTAGCAGGAATCACTAATTAATTATGCATGTATTGCATTTTGGCTAGTGTTACTGTCATTTTTAACATTT TTTAAAAATCAGCTTCTGCGGAAGCTTTTTGACTATGTGTATATTGTGATTTACATTTTCCCCCTTCCCTCTGATGCCAT TGCTTTGTAGGCAGCAAAACTTGAACCTAATTGCATGTCTACCCGATATGCTGTTGCTACCCATCGAATGAAGGAGGCAG AAAGATCTCAAGATCCTAGTGAACTGCTTTCATTCGGTGGAAATGAGATGGCTTCTATAATAAGAGATGGTGACTCATCT TTGGTTGAGCTTCCAACAGCCTGGGCTGGGCTTGCCATGGTTCACAAGGCTCAGCATGAGATATCATCAGCATACGAAAG TGAACAGCATGTGCTGACAGAAATGGAAGAGCGTGCTGTTTGCAGTTTAAAGCAGGTAGTTTATTACTTTCCTCCATTTA TCGCATGCTTTCTCTTAAGTATATACCTGCTAATTGGGCTCTTATCATGCACGGTGTGCAGTTTACACAGCTTATCTGAA ATGCCATTCTTTTTCTACTAGGCCGTAGCAGAAGATCCAGATGATCCTGTGCGGTGGCACCAACTTGGCGTTCATAGTCT TTGTACCCAGCAATTCAAAACATCACAAAAATACCTTAAAGCTGCTGTTGCCTGTGACAGAGGTTGTAGCTATACATGGT CTAACCTCGGTACTCTCTCTCTCTCTCTCTCTCTCTCAATAGGAATTTGCATTTTCTCATGTTCAATGTTGTATGCTTTT GGTGTTGCCAATTGTAGTCTGGTACTTGGACTCCCTCTTTCATTAGTTTTTCCTGTTTGGATATGGATTAAAGAGTACTT ATTGAAGCTTATCTACTTAAAAAAACACTGGATAAGCTTCAATGACTGCTCTTTGGTCCGCATCCAAACAGGCTCCTATT CCCTTTTATAGGTGTGTTCATGGGTTAAAAATGCATGTATAGGTGTATCACTTCAACTATCGGAAGAGCCATCACAAGCT GAAAAGGCATATAAGCAAGCTTTGTTATTGGCAACAAAACAACAAGCACATGCTATTCTGTCCAATTTGGGAATATTCTA TCGCCATGAGAAGAAATATCAACGTGCGAAGGCTATGTTCACAAAGTCACTTGAACTGCAGCCTGGGTACGCTCCTGCAT TCAACAATCTAGGTCTTGTGTTTGTTGCTGAGGGTCTGTTGGAAGAGGCCAAGTATTGTTTTGAAAAAGCTCTGCAATCT GATCCATTGCTCGATGCAGCTAAGTCTAACTTGGTTAAGGTGGTTACGATGTCAAAGATATGTAAAGGCCTTCTTAAAGA ATGA
CDS sequence (LotjaGi1g1v0231000.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGGATAAGCTGGGAGGAGCAGCAGCTGAACAGAGCTTGAACTCGAAGAGTTCACACCAAACGACTTCGAAGCTCGT CGTTTTGGCTGACCTCAACGTCAATCCTCCCGAAGCCGAAGCCGACGACGACGATTCTTCCCTTCTCCCTCCTCCCCAAA TCATTACCAGTCAAGATAAGAGTCTGTTGTCCAAAGACACTGATAGTACTGAAGGCGAAGGTAAAAAGTCGCACAAACTG GGGAAATGCCGCTCCAGACCTAGCAAGACAGATTCTCTTGATTGTGGGGGTGATGCAGATGTTGATCAACATGTACAAGG AGCTCCTTCATCCCGGGAGGAAAAAGTTAGCAGCATGAAGACTGGCTTGATTCATGTTGCGAGGAAGATGCCCAAAAATG CTCATGCTCATTTTATACTTGGCTTGATGCACCAAAGATTAAACCAGCCTCAAAAGGCTATACTGGTTTATGAGAAGGCA GAAGAGATCTTACTCAGGCCTGAGACTGAGATTGAGAGGCCAGATTTGCTTTCTTTAGTTCAGATTCACCATGCCCAGTG CTTGATACTCGAAAGCTCATCAGAAAACAGTTCAGATAAAGAACTCGAACCTCACGAACTTAAGGAAATTCTTTCTAAAC TTAAAGAGTCAGTGCAGTTTGATATCAGACAGGCAGCTGTATGGAATACACTAGGTTTTATCCTTCTTAAAACTGGTCGT GTGCAGAGTGCTATCTCAGTTTTGTCATCGTTGTTAGCCATTGCTCCAGAGAACTACGATTGTCTAGGAAATCTTGGGAT AGCTTATCTTCAAATTACTGTTACTGTGTTACCTTGCAGTGGGAATTTGGAATTATCCGCAAAATGTTTTCAGGAGTTGA TTCTAAAAGACCAAAACCATCCCGTAGCTTTGGTCAATTATGCTGCCCTTCTTTTGTGTAAATATGCTTCAGTAGTAGCA GGTGCTGGTGCAAGTGCGTCTGAAGGTGCTTTAGCAGATCAGGTGATGGCTGCTAATGTTGCTAAGGAATGTTTGTTAGC TGCAATTAAAGCAGATGTCAAATCAGCCCATATCTGGGGAAATCTTGCCTATGCATTTTCTATTAGTGGTGATCATCGAA GTTCCAGCAAGTGTTTAGAGAAGGCAGCAAAACTTGAACCTAATTGCATGTCTACCCGATATGCTGTTGCTACCCATCGA ATGAAGGAGGCAGAAAGATCTCAAGATCCTAGTGAACTGCTTTCATTCGGTGGAAATGAGATGGCTTCTATAATAAGAGA TGGTGACTCATCTTTGGTTGAGCTTCCAACAGCCTGGGCTGGGCTTGCCATGGTTCACAAGGCTCAGCATGAGATATCAT CAGCATACGAAAGTGAACAGCATGTGCTGACAGAAATGGAAGAGCGTGCTGTTTGCAGTTTAAAGCAGGCCGTAGCAGAA GATCCAGATGATCCTGTGCGGTGGCACCAACTTGGCGTTCATAGTCTTTGTACCCAGCAATTCAAAACATCACAAAAATA CCTTAAAGCTGCTGTTGCCTGTGACAGAGGTTGTAGCTATACATGGTCTAACCTCGGTGTATCACTTCAACTATCGGAAG AGCCATCACAAGCTGAAAAGGCATATAAGCAAGCTTTGTTATTGGCAACAAAACAACAAGCACATGCTATTCTGTCCAAT TTGGGAATATTCTATCGCCATGAGAAGAAATATCAACGTGCGAAGGCTATGTTCACAAAGTCACTTGAACTGCAGCCTGG GTACGCTCCTGCATTCAACAATCTAGGTCTTGTGTTTGTTGCTGAGGGTCTGTTGGAAGAGGCCAAGTATTGTTTTGAAA AAGCTCTGCAATCTGATCCATTGCTCGATGCAGCTAAGTCTAACTTGGTTAAGGTGGTTACGATGTCAAAGATATGTAAA GGCCTTCTTAAAGAATGA
Protein sequence (LotjaGi1g1v0231000.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MADKLGGAAAEQSLNSKSSHQTTSKLVVLADLNVNPPEAEADDDDSSLLPPPQIITSQDKSLLSKDTDSTEGEGKKSHKL GKCRSRPSKTDSLDCGGDADVDQHVQGAPSSREEKVSSMKTGLIHVARKMPKNAHAHFILGLMHQRLNQPQKAILVYEKA EEILLRPETEIERPDLLSLVQIHHAQCLILESSSENSSDKELEPHELKEILSKLKESVQFDIRQAAVWNTLGFILLKTGR VQSAISVLSSLLAIAPENYDCLGNLGIAYLQITVTVLPCSGNLELSAKCFQELILKDQNHPVALVNYAALLLCKYASVVA GAGASASEGALADQVMAANVAKECLLAAIKADVKSAHIWGNLAYAFSISGDHRSSSKCLEKAAKLEPNCMSTRYAVATHR MKEAERSQDPSELLSFGGNEMASIIRDGDSSLVELPTAWAGLAMVHKAQHEISSAYESEQHVLTEMEERAVCSLKQAVAE DPDDPVRWHQLGVHSLCTQQFKTSQKYLKAAVACDRGCSYTWSNLGVSLQLSEEPSQAEKAYKQALLLATKQQAHAILSN LGIFYRHEKKYQRAKAMFTKSLELQPGYAPAFNNLGLVFVAEGLLEEAKYCFEKALQSDPLLDAAKSNLVKVVTMSKICK GLLKE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 117 | 117 | - | – | |
| MobiDBLite | 11 | 29 | 19 | - | – | |
| PANTHER | 12 | 642 | 631 | 0.0 | – | |
| MobiDBLite | 64 | 98 | 35 | - | – | |
| Gene3D | 112 | 405 | 294 | 7.3E-28 | ||
| ProSiteProfiles | 134 | 167 | 34 | 6.579 | ||
| Pfam | 134 | 163 | 30 | 0.16 | ||
| SMART | 134 | 167 | 34 | 9.9 | ||
| ProSiteProfiles | 134 | 167 | 34 | 6.903 | ||
| ProSiteProfiles | 225 | 258 | 34 | 9.293 | ||
| SMART | 225 | 258 | 34 | 0.45 | ||
| SUPERFAMILY | 225 | 521 | 297 | 9.49E-21 | ||
| ProSiteProfiles | 225 | 258 | 34 | 9.901 | ||
| SMART | 259 | 300 | 42 | 350.0 | ||
| SMART | 356 | 389 | 34 | 0.036 | ||
| Pfam | 356 | 389 | 34 | 4.3E-4 | ||
| ProSiteProfiles | 356 | 389 | 34 | 7.877 | ||
| ProSiteProfiles | 356 | 389 | 34 | 7.846 | ||
| Gene3D | 427 | 637 | 211 | 1.1E-33 | ||
| SMART | 436 | 469 | 34 | 330.0 | ||
| SUPERFAMILY | 438 | 634 | 197 | 2.47E-21 | ||
| ProSiteProfiles | 468 | 622 | 155 | 23.408 | ||
| SMART | 485 | 518 | 34 | 360.0 | ||
| SMART | 519 | 552 | 34 | 0.1 | ||
| ProSiteProfiles | 519 | 552 | 34 | 7.139 | ||
| SMART | 555 | 588 | 34 | 4.8E-4 | ||
| Pfam | 555 | 617 | 63 | 1.2E-7 | – | |
| ProSiteProfiles | 555 | 588 | 34 | 10.06 | ||
| SMART | 589 | 622 | 34 | 0.011 | ||
| ProSiteProfiles | 589 | 622 | 34 | 9.853 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0231000.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…