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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0231000 |
| Transcript ID | LotjaGi1g1v0231000.5 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Photosystem I assembly protein Ycf3; TAIR: AT5G63200.1 tetratricopeptide repeat (TPR)-containing protein; Swiss-Prot: sp|Q6PGP7|TTC37_HUMAN Tetratricopeptide repeat protein 37; TrEMBL-Plants: tr|A0A151RVP9|A0A151RVP9_CAJCA Tetratricopeptide repeat protein 37; Found in the gene: LotjaGi1g1v0231000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:54159149..54163341) extracted from Lotus japonicus Gifu genome v1.2.
TTGACAAATGACGAAAACAGTCAAGATAAGAGTCTGTTGTCCAAAGACACTGATAGTACTGAAGGCGAAGGTAAAAAGTC GCACAAACTGGGGAAATGCCGCTCCAGACCTAGCAAGACAGATTCTCTTGATTGTGGGGGTGATGCAGATGTTGATCAAC ATGTACAAGGAGCTCCTTCATCCCGGGAGGAAAAAGTTAGCAGCATGAAGACTGTGAGTTCACTGTCACAAATCATTAAA ATATTCCCTTTTATCTAAACTATCCCACTGCTGAACTCAAAATTTGTCAGTTAATCAGTCGAACTGTGCTTAAGGATTTC AGTTAGTGAGTCAGTCAGTGTTTTCAAATATATGCCATGGCGGGTTTTTGGCTCTCCACCATGGCCCATATGCCACCATA ATCCGCATCATTTTTTGTCAAATATGGCGGGTTCTGGCTCCGCCATTAACAACCTTGGAGTCAGTCCATCTTTCCTAATA AAAATATTACCTTTTGTTGTAAACACGGAATCAAAGACCTCAGAATATCTTTTATGAATTATTTTTTTCTGTTTGTTGAA GTATTTAGGCAATCATTATGTTATCTGGGAAATCAGAACAGAAATATTTCGTCTGTATTTTTTTTCCAGTAAAATACATT AGTAGATGGATCATATGTAGGAATGCAGATGGAGATTTTTTTTTTTTTCACTCATGTTTTTCATGATTCATTGAAATATT TCTAGCCATCCAGTGTAGGATCTGATGGATGCCTGTTGAAGATAAAGGCATTTTGCTTGTTCCTATGTTATCATCTAAAA TGAAATTCCTAATATTTTTCTCAAGTGGTGAACATGAATAGTTGATGTAACTATTATGTATTGTAACGGAAAATGCTGTA TTTCTTGGGACAAAGTGAGCCAGTGAGGCACCAAAGCTAACATATCATGTCCCTCTGTCCTTCATTTCTATTTGCAGAAT AGCATGATTTAGATATCAACTCAATTCAGATGATTTATGCCTTAACTAATGTCTCTCAATTGGTCATTTATTGTTTTGCT TATCGTTTCTCATGATGGGGTTTATTCTATGACCATATTAGGATCTATGACCATGAATCATGTTGAATACAAGCTGTTCA ATGAATAACTTTACCATAAGTGAGTTTAGATTGCTTCCTTCTTATCACCATATTTCTCTGTTTGGATCAATGGTTTTTTG TGGCAAAGAGGGAGGATGGAAAACCAAAAATACAATATTGACACATTAGTAATATATTTTTATGGTTGGCCATTGTTATT GTTTTTGTTATAGACTTATTGTTGTTTATCATCATTATTGCTGCTGTTATTGTTTTTGTTTATTACTGACTACATATGTT CATGCTTGTAGGGCTTGATTCATGTTGCGAGGAAGATGCCCAAAAATGCTCATGCTCATTTTATACTTGGCTTGATGCAC CAAAGATTAAACCAGCCTCAAAAGGTTGTCCTTTAACATTCACGTGTTCGATTTTGTACATATATGTTTGCTCATTGAGT CATTAATTTTTTTTTGCAGGCTATACTGGTTTATGAGAAGGCAGAAGAGATCTTACTCAGGCCTGAGACTGAGATTGAGA GGCCAGATTTGCTTTCTTTAGTTCAGATTCACCATGCCCAGGTGCAATAACCTTGATTTGATAGATTAATGATTCTAATC TTTTGGTTCATTGACATTTTTTATAATCCTTATAGTGCTTGATACTCGAAAGCTCATCAGAAAACAGTTCAGATAAAGAA CTCGAACCTCACGAACTTAAGGAAATTCTTTCTAAACTTAAAGAGTCAGTGCAGTTTGATATCAGACAGGCAGCTGTATG GAATACACTAGGTTTTATCCTTCTTAAAACTGGTCGTGTGCAGGTACAAGTACCTTATGCTCTCTTCCTTATGCTTTTAT GTTCTCAAGGCATATATGATGTTTCTTTCAGTTTCAGTATTAGATGTGAGTCATGTGACTACTTTTCCTTTTCCTTCACC AATGTGAACTTCAAAAACATATGCAGAGTGCTATCTCAGTTTTGTCATCGTTGTTAGCCATTGCTCCAGAGAACTACGAT TGTCTAGGAAATCTTGGGATAGCTTATCTTCAAATGTAAGTTTGAATGGAAATTGCTGTATATTTATTACATTGAATTAT TTTGGAAATGTCATTTGTGTCTTCAATTGAAAAGAGTTTATATGTGTCTTTACTCCGTGCATATCGTTCCTCAGTACTGT TACTGTGTTACCTTGCAGTGGGAATTTGGAATTATCCGCAAAATGTTTTCAGGAGTTGATTCTAAAAGACCAAAACCATC CCGTAGCTTTGGTCAATTATGCTGCCCTTCTTTTGTGTAAATATGCTTCAGTAGTAGCAGGTACTATAAAGTCCATGCGC TCAATTTTTCATTTGTCTATTATTAAGTGGTTGAAGAAGTTTTTGTAATATGGTTTTCATTTTTCATCATATTGAATCTT CATTATTTCCAGGTGCTGGTGCAAGTGCGTCTGAAGGTGCTTTAGCAGATCAGGTGATGGCTGCTAATGTTGCTAAGGAA TGTTTGTTAGCTGCAATTAAAGCAGATGTCAAATCAGCCCATATCTGGGGAAATCTTGCCTATGCATTTTCTATTAGTGG TGATCATCGAAGTTCCAGCAAGTGTTTAGAGAAGGTGCTCATGGACCCTTGCTACAGTCATTTATAACGTATTTATTGTG AGGTTGTTCATTGGTTTTCTGGTCCTTGTTTTTGGTGGAGATGTTTTGATCTTTGATTCTCTGCAACAAATTTTTTGTCA TCCTTTCTTATGCGTTATGTATCATAATTAATATTAAAATTAGCAGGAATCACTAATTAATTATGCATGTATTGCATTTT GGCTAGTGTTACTGTCATTTTTAACATTTTTTAAAAATCAGCTTCTGCGGAAGCTTTTTGACTATGTGTATATTGTGATT TACATTTTCCCCCTTCCCTCTGATGCCATTGCTTTGTAGGCAGCAAAACTTGAACCTAATTGCATGTCTACCCGATATGC TGTTGCTACCCATCGAATGAAGGAGGCAGAAAGATCTCAAGATCCTAGTGAACTGCTTTCATTCGGTGGAAATGAGATGG CTTCTATAATAAGAGATGGTGACTCATCTTTGGTTGAGCTTCCAACAGCCTGGGCTGGGCTTGCCATGGTTCACAAGGCT CAGCATGAGATATCATCAGCATACGAAAGTGAACAGCATGTGCTGACAGAAATGGAAGAGCGTGCTGTTTGCAGTTTAAA GCAGGTAGTTTATTACTTTCCTCCATTTATCGCATGCTTTCTCTTAAGTATATACCTGCTAATTGGGCTCTTATCATGCA CGGTGTGCAGTTTACACAGCTTATCTGAAATGCCATTCTTTTTCTACTAGGCCGTAGCAGAAGATCCAGATGATCCTGTG CGGTGGCACCAACTTGGCGTTCATAGTCTTTGTACCCAGCAATTCAAAACATCACAAAAATACCTTAAAGCTGCTGTTGC CTGTGACAGAGGTTGTAGCTATACATGGTCTAACCTCGGTACTCTCTCTCTCTCTCTCTCTCTCTCAATAGGAATTTGCA TTTTCTCATGTTCAATGTTGTATGCTTTTGGTGTTGCCAATTGTAGTCTGGTACTTGGACTCCCTCTTTCATTAGTTTTT CCTGTTTGGATATGGATTAAAGAGTACTTATTGAAGCTTATCTACTTAAAAAAACACTGGATAAGCTTCAATGACTGCTC TTTGGTCCGCATCCAAACAGGCTCCTATTCCCTTTTATAGGTGTGTTCATGGGTTAAAAATGCATGTATAGGTGTATCAC TTCAACTATCGGAAGAGCCATCACAAGCTGAAAAGGCATATAAGCAAGCTTTGTTATTGGCAACAAAACAACAAGCACAT GCTATTCTGTCCAATTTGGGAATATTCTATCGCCATGAGAAGAAATATCAACGTGCGAAGGCTATGTTCACAAAGTCACT TGAACTGCAGCCTGGGTACGCTCCTGCATTCAACAATCTAGGTCTTGTGTTTGTTGCTGAGGGTCTGTTGGAAGAGGCCA AGTATTGTTTTGAAAAAGCTCTGCAATCTGATCCATTGCTCGATGCAGCTAAGTCTAACTTGGTTAAGGTGGTTACGATG TCAAAGATATGTAAAGGCCTTCTTAAAGAATGA
CDS sequence (LotjaGi1g1v0231000.5) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGACTGGCTTGATTCATGTTGCGAGGAAGATGCCCAAAAATGCTCATGCTCATTTTATACTTGGCTTGATGCACCA AAGATTAAACCAGCCTCAAAAGGCTATACTGGTTTATGAGAAGGCAGAAGAGATCTTACTCAGGCCTGAGACTGAGATTG AGAGGCCAGATTTGCTTTCTTTAGTTCAGATTCACCATGCCCAGTGCTTGATACTCGAAAGCTCATCAGAAAACAGTTCA GATAAAGAACTCGAACCTCACGAACTTAAGGAAATTCTTTCTAAACTTAAAGAGTCAGTGCAGTTTGATATCAGACAGGC AGCTGTATGGAATACACTAGGTTTTATCCTTCTTAAAACTGGTCGTGTGCAGAGTGCTATCTCAGTTTTGTCATCGTTGT TAGCCATTGCTCCAGAGAACTACGATTGTCTAGGAAATCTTGGGATAGCTTATCTTCAAATTGGGAATTTGGAATTATCC GCAAAATGTTTTCAGGAGTTGATTCTAAAAGACCAAAACCATCCCGTAGCTTTGGTCAATTATGCTGCCCTTCTTTTGTG TAAATATGCTTCAGTAGTAGCAGGTGCTGGTGCAAGTGCGTCTGAAGGTGCTTTAGCAGATCAGGTGATGGCTGCTAATG TTGCTAAGGAATGTTTGTTAGCTGCAATTAAAGCAGATGTCAAATCAGCCCATATCTGGGGAAATCTTGCCTATGCATTT TCTATTAGTGGTGATCATCGAAGTTCCAGCAAGTGTTTAGAGAAGGCAGCAAAACTTGAACCTAATTGCATGTCTACCCG ATATGCTGTTGCTACCCATCGAATGAAGGAGGCAGAAAGATCTCAAGATCCTAGTGAACTGCTTTCATTCGGTGGAAATG AGATGGCTTCTATAATAAGAGATGGTGACTCATCTTTGGTTGAGCTTCCAACAGCCTGGGCTGGGCTTGCCATGGTTCAC AAGGCTCAGCATGAGATATCATCAGCATACGAAAGTGAACAGCATGTGCTGACAGAAATGGAAGAGCGTGCTGTTTGCAG TTTAAAGCAGGCCGTAGCAGAAGATCCAGATGATCCTGTGCGGTGGCACCAACTTGGCGTTCATAGTCTTTGTACCCAGC AATTCAAAACATCACAAAAATACCTTAAAGCTGCTGTTGCCTGTGACAGAGGTTGTAGCTATACATGGTCTAACCTCGGT GTATCACTTCAACTATCGGAAGAGCCATCACAAGCTGAAAAGGCATATAAGCAAGCTTTGTTATTGGCAACAAAACAACA AGCACATGCTATTCTGTCCAATTTGGGAATATTCTATCGCCATGAGAAGAAATATCAACGTGCGAAGGCTATGTTCACAA AGTCACTTGAACTGCAGCCTGGGTACGCTCCTGCATTCAACAATCTAGGTCTTGTGTTTGTTGCTGAGGGTCTGTTGGAA GAGGCCAAGTATTGTTTTGAAAAAGCTCTGCAATCTGATCCATTGCTCGATGCAGCTAAGTCTAACTTGGTTAAGGTGGT TACGATGTCAAAGATATGTAAAGGCCTTCTTAAAGAATGA
Protein sequence (LotjaGi1g1v0231000.5) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKTGLIHVARKMPKNAHAHFILGLMHQRLNQPQKAILVYEKAEEILLRPETEIERPDLLSLVQIHHAQCLILESSSENSS DKELEPHELKEILSKLKESVQFDIRQAAVWNTLGFILLKTGRVQSAISVLSSLLAIAPENYDCLGNLGIAYLQIGNLELS AKCFQELILKDQNHPVALVNYAALLLCKYASVVAGAGASASEGALADQVMAANVAKECLLAAIKADVKSAHIWGNLAYAF SISGDHRSSSKCLEKAAKLEPNCMSTRYAVATHRMKEAERSQDPSELLSFGGNEMASIIRDGDSSLVELPTAWAGLAMVH KAQHEISSAYESEQHVLTEMEERAVCSLKQAVAEDPDDPVRWHQLGVHSLCTQQFKTSQKYLKAAVACDRGCSYTWSNLG VSLQLSEEPSQAEKAYKQALLLATKQQAHAILSNLGIFYRHEKKYQRAKAMFTKSLELQPGYAPAFNNLGLVFVAEGLLE EAKYCFEKALQSDPLLDAAKSNLVKVVTMSKICKGLLKE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 516 | 516 | 0.0 | – | |
| Gene3D | 6 | 205 | 200 | 4.7E-23 | ||
| SUPERFAMILY | 13 | 265 | 253 | 6.75E-24 | ||
| Pfam | 16 | 45 | 30 | 0.12 | ||
| SMART | 16 | 49 | 34 | 9.9 | ||
| ProSiteProfiles | 16 | 49 | 34 | 6.579 | ||
| ProSiteProfiles | 16 | 49 | 34 | 6.903 | ||
| ProSiteProfiles | 107 | 174 | 68 | 15.054 | ||
| ProSiteProfiles | 107 | 140 | 34 | 9.293 | ||
| SMART | 107 | 140 | 34 | 0.45 | ||
| Pfam | 117 | 176 | 60 | 1.4E-6 | – | |
| SMART | 141 | 174 | 34 | 0.016 | ||
| ProSiteProfiles | 141 | 174 | 34 | 7.405 | ||
| Gene3D | 206 | 285 | 80 | 6.4E-5 | ||
| SUPERFAMILY | 229 | 508 | 280 | 5.06E-24 | ||
| SMART | 230 | 263 | 34 | 0.036 | ||
| Pfam | 230 | 263 | 34 | 3.3E-4 | ||
| ProSiteProfiles | 230 | 263 | 34 | 7.877 | ||
| ProSiteProfiles | 230 | 263 | 34 | 7.846 | ||
| Gene3D | 303 | 511 | 209 | 7.7E-34 | ||
| SMART | 310 | 343 | 34 | 330.0 | ||
| ProSiteProfiles | 342 | 496 | 155 | 23.408 | ||
| SMART | 359 | 392 | 34 | 360.0 | ||
| ProSiteProfiles | 393 | 426 | 34 | 7.139 | ||
| SMART | 393 | 426 | 34 | 0.1 | ||
| SMART | 429 | 462 | 34 | 4.8E-4 | ||
| ProSiteProfiles | 429 | 462 | 34 | 10.06 | ||
| Pfam | 429 | 491 | 63 | 9.0E-8 | – | |
| SMART | 463 | 496 | 34 | 0.011 | ||
| ProSiteProfiles | 463 | 496 | 34 | 9.853 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0231000.5, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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