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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0238200 |
| Transcript ID | LotjaGi1g1v0238200.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | SWI/SNF complex component SNF12 like; TAIR: AT5G14170.1 SWIB/MDM2 domain superfamily protein; Swiss-Prot: sp|Q9FMT4|SNF12_ARATH SWI/SNF complex component SNF12 homolog; TrEMBL-Plants: tr|G7J5J5|G7J5J5_MEDTR Chromatin remodeling complex subunit; Found in the gene: LotjaGi1g1v0238200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:56774734..56777752) extracted from Lotus japonicus Gifu genome v1.2.
GAATGTTTGAGTACCAAACATGAGAAACGAAAACGACTGGGCAGGCAATTCACCCGTGAAACACGCTCCGGTGATTCAGC TTCAGTTCGTCTCTATCAGTTTCTGACACACAACCGTAAGAATCGTCTCTTTTGCTTCATTCTCCTCTTCTCTCTCATTT TTCTTCTTCTTCTTTATCTTCAGAAAACACTAAATGCCATGAAATCCTTAAAGTTGATCAAACTAATTTCAATTTGGTGT GTTTCGTTTCCAATTCATGCATCTTGTACAGACCTTGCATTTCCGTGATTAGGGATTTGTTTTGATCTTCGAATTTTCGT AATGTTGTTATGAGTTTGATTTTATTTTTATGTGTTTGTTTGTTGATTGTGGTTCAGTTTCAGTGAGTTTGCTTGTGATT GAGATTTTTTGATTCTGGGTTTGGATTTTCAGAAGAAGAAGCAGAGCAACAACAATGAATAACGATGGAAAGAATGTTGC TGCATCATCATCATTGTTTGGTCATTCTGGAACAGCCACACCGCCACAATGGAACCACACAACCAATTTTGTGTCTCGGT CAAACCCCCAAGCCCAATACCCTGGTCATTTTCAGCTTTCACAACCCCAACAATCGCAGCTGCTTGCGCAGGCTCAGTTT GCGCAAGCACGGGCACAATTGCAGTCTCAGGTAGTGCTTGCTCGTTTGCAATCTCAAGCTCAGATTGTTGAGAATTTACA TAATGCTAATGCTAGTATGGCTAATGTTATGTCAACTCCGGCCCCTGGAAGCTCAAGGCGAGCAGCCCAAAAGCTGCCTT CACGGTTTTCCGGTTCATCCAGTACCAACCAATCCTTGCGGGCCTCGGCTGATGGGGGAAAGAAGAGGGAGTTCCTGGAG AAGCAAATACCGGAGAAGGTTGCTGCACTTCTGCCTGAGTCTGCTCTTTATACTCAGTTGCTTGATTTTGAGGCTATGAT GGATGATGAGTTGGCCAGGAGAAAGATGGATGTACAGGAGGCTATTAGGTGCCCTCCCCATGTTCAGAAAACTCTTCGTA TGTATGTGTTTAATACCTTCTCGAAGCGCACCAAAATGGATTGTGGGAATGAAAGTGCTGAGGAACCTTCTTGGTCTCTT AAGATAACTGGAAGGATATTGGAAGATGGTAAGGATACTGTGCCTGGAAATTTGCAGAGATCAAGTCCTCCGTGCCCGAA GTTCTCTGCTTTCTTCAAGAAAGTTACCATATGCTTGGATCAGAGCCTTTATCCCGAGAATCATGTCATTGTATGGGACA GTGCTCTCTCACCTAAGCAACATGATGGTTTTGAGGTGAGGAGGAAAGGAGATAAAGAATTCACTGCCGTGATCAGACTA GAAATGAATTATTCTCCGGAGAAGTATATGGTCTCAACAGAATTGTTTAAGCTTTTAGGGGTTCAGGTTGAGACTCGCCC AAAAATATTAGCTGCTCTTTGGCACTATGTGAAGTCCAGGAATCTACAGAGTCGAGATGACCCTTCATTTTTCATGTGTG ATCCTTCTCTCCGAAGGTTGTTTGGGGAAGAAAAGATCAAATTCACCGTGGCAGCTCAGAAGTTGTTACCGCATCTGTCA AAACCACAGCCCATACAGTTGGAGCATAACATCAAGCTTTCTGGATATTGTCCAGGTGGAACTACATGTTACGATGTGCT GGTCGACGTGCCTTTTCCACTGGAGAATGAAGTGTCCGCATTTTTGGCTAGCACTGAGAGTCCAAAAGAGATGGAAGCTT TAGATGAGGTGATTTGTGCTTCCTTAAAGAAGATCCAGGAACATCGAAGGAGACGGGCTTCCTTTCTTAACTTTAGTCAG TCTCCAGCTGAGTATGTTAACACTTCGATTGCTTCTCAGAGCAAAGCTCTAAAACTTGTAGCTAGAGATGCCAGCTGTAA TGCTGTAAAGGAACAGCGGTCTGAATTCTACAATAAACCATGGTGAGTATTATGCTGATGAGTAACCTTTTTTCTCTGTT GCTTGTGAAGCATGCTGCATGATAAACTTCTGGTTACGACCTGAATTGTATTTATTTGCTAAATGTGAGAGTTGAAGATA TCAGCAACCTAGGAATTATACACATCAAATAAGAAGCTGCATTTGCGTAGGACACTTAAACTAACACAACATGACAGTAC ATAGAGAGCTATACTTATTGTTGTGTTAGATTGTCTGTGCTTAGGTGGCAAGTTGGCAACTATTATGAAATTGTGATACA ACATCATAGGATTTATCCTGATTTATGTTTTCACTCTGAAAATGATGCATCGGTTATTTATGAAACTGAAAGTGTAAGGT GTTAAGTCTGACCTTGATTTTATACTAGGGGAATGGAGTGTTAAGTGAGGGGCTCTAGTCGTTTGGGTATCTATGATGAA TAGAGAAAGTGGAAGACATGATAACAATAATAGAAGCTGTGAAAATGAGGTCCTATATGCTCCTTGCCCCCCCCCCCCCC CCCCTCCTTATCTGATATACCTATTAAATAAGGCATTTATCAAAGTATTTTTTAATTTGCTTGCGTTTATTTCTTGTAAC GTCTACAGGGTTGAGGATGCCGCCATTCGGTACTTGAACCGCAAAACTGCTGGAAGTGATACTCCTGGGGGCAACTAAGA GAAAATTGTAGAAGTGACATTTTTATTTACTTTTCTGACAACTGTATATGTATTTTCTTTTCATATATACCTAAGCCTGA AGAACAGAAGAAAGGAACGTGCCTAGGAACAAAGAAGATATTGTTTTCTAGTTAGTGGAAATCAAGGGGGTAAAGTGTTT CATCATGATAGTTTAGCAATTAGTTACCTTTTTGAATGTTTTGTACAAAGTTTCAGAAATTGCATATTGATCCATGAATC TTTGTTGCCTCCCTCAATTCATTGACTAAGACCAGTAATGCATGAATATATTGGAAAACCATTTCAGAAGGAGATGTAAA AGACCAGTTAAACTAATATGAGAGGGAAATTTATGAAAATATAAAAAATTACTCTGCTC
CDS sequence (LotjaGi1g1v0238200.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAATAACGATGGAAAGAATGTTGCTGCATCATCATCATTGTTTGGTCATTCTGGAACAGCCACACCGCCACAATGGAA CCACACAACCAATTTTGTGTCTCGGTCAAACCCCCAAGCCCAATACCCTGGTCATTTTCAGCTTTCACAACCCCAACAAT CGCAGCTGCTTGCGCAGGCTCAGTTTGCGCAAGCACGGGCACAATTGCAGTCTCAGGTAGTGCTTGCTCGTTTGCAATCT CAAGCTCAGATTGTTGAGAATTTACATAATGCTAATGCTAGTATGGCTAATGTTATGTCAACTCCGGCCCCTGGAAGCTC AAGGCGAGCAGCCCAAAAGCTGCCTTCACGGTTTTCCGGTTCATCCAGTACCAACCAATCCTTGCGGGCCTCGGCTGATG GGGGAAAGAAGAGGGAGTTCCTGGAGAAGCAAATACCGGAGAAGGTTGCTGCACTTCTGCCTGAGTCTGCTCTTTATACT CAGTTGCTTGATTTTGAGGCTATGATGGATGATGAGTTGGCCAGGAGAAAGATGGATGTACAGGAGGCTATTAGGTGCCC TCCCCATGTTCAGAAAACTCTTCGTATGTATGTGTTTAATACCTTCTCGAAGCGCACCAAAATGGATTGTGGGAATGAAA GTGCTGAGGAACCTTCTTGGTCTCTTAAGATAACTGGAAGGATATTGGAAGATGGTAAGGATACTGTGCCTGGAAATTTG CAGAGATCAAGTCCTCCGTGCCCGAAGTTCTCTGCTTTCTTCAAGAAAGTTACCATATGCTTGGATCAGAGCCTTTATCC CGAGAATCATGTCATTGTATGGGACAGTGCTCTCTCACCTAAGCAACATGATGGTTTTGAGGTGAGGAGGAAAGGAGATA AAGAATTCACTGCCGTGATCAGACTAGAAATGAATTATTCTCCGGAGAAGTATATGGTCTCAACAGAATTGTTTAAGCTT TTAGGGGTTCAGGTTGAGACTCGCCCAAAAATATTAGCTGCTCTTTGGCACTATGTGAAGTCCAGGAATCTACAGAGTCG AGATGACCCTTCATTTTTCATGTGTGATCCTTCTCTCCGAAGGTTGTTTGGGGAAGAAAAGATCAAATTCACCGTGGCAG CTCAGAAGTTGTTACCGCATCTGTCAAAACCACAGCCCATACAGTTGGAGCATAACATCAAGCTTTCTGGATATTGTCCA GGTGGAACTACATGTTACGATGTGCTGGTCGACGTGCCTTTTCCACTGGAGAATGAAGTGTCCGCATTTTTGGCTAGCAC TGAGAGTCCAAAAGAGATGGAAGCTTTAGATGAGGTGATTTGTGCTTCCTTAAAGAAGATCCAGGAACATCGAAGGAGAC GGGCTTCCTTTCTTAACTTTAGTCAGTCTCCAGCTGAGTATGTTAACACTTCGATTGCTTCTCAGAGCAAAGCTCTAAAA CTTGTAGCTAGAGATGCCAGCTGTAATGCTGTAAAGGAACAGCGGTCTGAATTCTACAATAAACCATGGGTTGAGGATGC CGCCATTCGGTACTTGAACCGCAAAACTGCTGGAAGTGATACTCCTGGGGGCAACTAA
Protein sequence (LotjaGi1g1v0238200.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNNDGKNVAASSSLFGHSGTATPPQWNHTTNFVSRSNPQAQYPGHFQLSQPQQSQLLAQAQFAQARAQLQSQVVLARLQS QAQIVENLHNANASMANVMSTPAPGSSRRAAQKLPSRFSGSSSTNQSLRASADGGKKREFLEKQIPEKVAALLPESALYT QLLDFEAMMDDELARRKMDVQEAIRCPPHVQKTLRMYVFNTFSKRTKMDCGNESAEEPSWSLKITGRILEDGKDTVPGNL QRSSPPCPKFSAFFKKVTICLDQSLYPENHVIVWDSALSPKQHDGFEVRRKGDKEFTAVIRLEMNYSPEKYMVSTELFKL LGVQVETRPKILAALWHYVKSRNLQSRDDPSFFMCDPSLRRLFGEEKIKFTVAAQKLLPHLSKPQPIQLEHNIKLSGYCP GGTTCYDVLVDVPFPLENEVSAFLASTESPKEMEALDEVICASLKKIQEHRRRRASFLNFSQSPAEYVNTSIASQSKALK LVARDASCNAVKEQRSEFYNKPWVEDAAIRYLNRKTAGSDTPGGN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 45 | 45 | - | – | |
| PANTHER | 59 | 525 | 467 | 2.4E-232 | – | |
| PANTHER | 59 | 525 | 467 | 2.4E-232 | – | |
| MobiDBLite | 97 | 139 | 43 | - | – | |
| MobiDBLite | 97 | 131 | 35 | - | – | |
| SUPERFAMILY | 301 | 391 | 91 | 2.05E-21 | ||
| Gene3D | 303 | 389 | 87 | 3.9E-21 | ||
| SMART | 307 | 386 | 80 | 1.1E-9 | ||
| Pfam | 310 | 381 | 72 | 2.6E-17 | ||
| CDD | 313 | 381 | 69 | 6.81677E-23 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0238200.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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