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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0244600 |
| Transcript ID | LotjaGi1g1v0244600.4 |
| Related isoforms 7 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transducin/WD40 repeat protein; TAIR: AT1G78070.1 Transducin/WD40 repeat-like superfamily protein; Swiss-Prot: sp|Q9Y7K5|YGI3_SCHPO Uncharacterized WD repeat-containing protein C2A9.03; TrEMBL-Plants: tr|A0A0L9UG10|A0A0L9UG10_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0244600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:58727813..58733358) extracted from Lotus japonicus Gifu genome v1.2.
GCTCTTTCCGCAAACCCTCACCGCTTCTTCTTCTTCTTCCTATTCGAATTCACTCTCTGAAAACCCTAACCAGTAACCAC CATGGAGCATTTCAACAACGATGACCTCGAGTACGTCGTCGACGATGGCTTCTACTCCGACAACGCCTCCGACTTCGAAG ACGACCACCACGCCTTCTCCTCCGACGACAAACGGAGCTCCTCCTCCGCCGATTCCCCTGACTCCGACTCCGACTCCGAT TTTGAAACGGTAATTTCTCTCTCTTTCTCTCTTTCTTGTTTTTGAAGTCTTTGTTAGCTTCGTCGATGGTGTTCACAATT CATTGGTTCAATTGATTTTGAAACAGAGTGGTAATAATAGTGCGAAAACTGACACCTCTGCTTCGGAAGCGAGGAACGGG AAGGATATCCAGGGAATTCCATGGGAGAAGCTTAATTATAGCAGAGACGAGTACCGTGTCACGAGATTGAAGCAGTACAT GAACTATGAGAATCTCTCTCGTTCACGTGAAGACCTACACAAGGTTAATTTTTATTTTTATTTATAATTTGGAATACTAC TACTATGTATGTAGCTTTTTAATTTTGTTATTAATTTTTGGTGTTTTTTGTTATTTTTGGTTCACAGGAGTGCTTGGAAG TGCAGAAAGGGAAGAGCTTCTATGACTTCCAGTTCAATACCAGGCTTGTCAAGTCCACAATTCTGCATTTTCAGGTACAG TTGAGGCTTTGTTCGTCGCGATTCATTAGTTAACTTAACTATGGATGTTCCACTATATTTGGGGGTTTTGGGGTGATTCA TTTGACTTTTACTGCTATTTATATGTTGGATTTTGACTAGAGTTGCCGTTATTTAGTGACTAAAAACTATTAATCCCAGC TTATGTTCATTGGTTTACTGCTGTTATGTTATCATGTTTGTTATTGCTCATATTTTACTGATATTGTTAACTGCTACTGC TAACTGACCATATAAATAATTTTTCTATGCATGATTTTGGTATTGTTCTAGTTTTGCAGGATTGTGTAACCTGTACTATT TCTTTACAGGATGGAATTAGTGGCTGCGCCTCCTGTATATAAAGATTTATATCAAATCTCTTTGGAATTTCACATGCACA AAACTAACAACCAACTTCAAGTTTGAGAATTTTTCAACACTAATTTATGAAAACCTTGTTCTTCGACTGGAACCCAAAGA AATTATTCAACTTTTTTGGAAGCAAGTCTTGAGTCTGATCTGGGTGAATTTTTTTCCATGCCCAGATAGAAGAGAAATGA GTTTTCTTTATGATATATTCTTCATAAAGGGTTTCCATACAGAATTTTATTCACTGCATCCTCTCTCTGTTTTTTTACTT TACAAATTTTCTCCAGGATGCTTCTTTCTTTCCTTAAAACTGTTTTTGAAATTTCTTTCTTTTTAAAAACAAAAAGTAAA CTTTTCTAAAGAATGATCTCCAATAGATGCCACATATTCTTTTGCACAGACAAGACGGTTTCATGCTAATTTATGGATAT GGAGGCATCAAGGCTATGGTATGACTTGGCATTCTTAAAATTTTGGTGATGATTTCCTGTGAAAAAGATGTTTTTTTTGC CTCTATGTAATGAGCTTTCATGCGACATACTGAATGACTGTGCACACACAGCACTATGGATCATCCTATAAAAGCTTTAG AGACTTCATACCATCTTCTTCCAGTGTCTGAAATGGATTTCTGATTAAGATTCAGCACCATGAATTGTATTATACAAGTA CAGTTTCTAACTAGAATCAGCAGAGTATTACACTAAAAAAAAGTTGGCCCCTTTATGTTAGTTCTTGTCAAACTAAGCCA ACAATCTGTCTGGGTCCTGAAGTCAAATATTCTAGTTAAGTGAAGATATGTTCAATAGGCTTGGAGACGAAAGCCTACAT GGCTGGCAGATTGTCTTTTAAGGCGGAAGGATTAACTTACATGGCACGAAACTGGTGACCATGCAATTAGTTGTCCTTTG ATAATGATAAATTATGTACTTACATGGTTTCAGAGTAGTCATTACAACTGCAACAACAGTTAATAATTCTTAAGCCAAGG TTTCAATATTACAAATTTTTACACCTTGAATAATTTTGGAAGCATTGTATGTTTCCCATGATTATGTCTGCTACGTTATT GTTATATCATTACCTTCTACAGTATATGTGTTCATTTGCCTTTGTAATTATGCACCTATTCATCTAGTAGCTGTTGCACT GTACGTTTCTGCTATATAATTTATTGCTTGACTTGTTTCTGCATTTAGGCCTTCTATTTCTCTCTTTATGTCAGCTTTTA AAGCAGGTGGAGTGTGAGCAGCTTGGCAGGACATTATCTTATGGTATGGTAGGAAAAATATCTGACCACATTTGAGAGGG CTCTAACATTATCAGTTATTTGTTAGTGTTGATTTTGACATTATCAGGAGAGGCCTTGCCTCATATTGTTTGGCTATATA TTTTTAGGATCTTCTTGTCTATAGAATAGTTATCATTTAAATATTTTTTACTTCATATTTAGTTACCTGTTAGATTTCTT GTCTGTCACCTGATTTCTGCAGTAGATTTTGTTTCATTTAGTATATGAAGATCACATTTTTTTTTGGAAGATAAATCATA TCGTTATCATAAAATTGAGTACAAAGGTCATTACAACATCCTTCTCATGAAGGCCCCTTAATTGTGAGCCATATCCTCAA AGCAAAACCAAGGAGGATCAACCCTATTACAACCAATCTTAGTTAGATAGTCTGCAATTGTATTAGCTTCCCAATACGCG TGTCTAACACCCCAGCAATTCACCTCCCCCAACAGAAAATTGATTTGATTCCACTCGTTGAGGAGCTTCCACGGCCTGTT TTGTTTTGAATTCACCCTAATATGAAGATCAATTATACTTCATGGAACTAGTTTTTTTTAATCACTAGTATTTTGAAGAA TTTTTAATTTTACATTTTTATCATCACAGGGCACAAGGTTTAAGTTGATGGAAATAAGTATAGTCACGTTTTCTTTAGAA GTTCTGTATTTTTGTGCTGGGCTTCTTGTTTGAGATCATAAACTCACTCTGCATAATAGTGATTCTTGACTTCAATAATG TTTCATGATTGATTATATAATGACCATTTTTGTGTTTACAACTTGATATTAACCATTTCCGTTTCTGTACTGTCATTGTC TTCCGCTTTCTCTCTACAGAAGTCAGGCTCGTCAGCTGTAGTTTGGCCACTGACTTGCTTCATAATTTTTAGCATTTCTA TTTTTTAAATTCTACCTTTCTTGCATAGTAAAAAGAGAAAAGTGGGAAAATGGCTTTTCTATCGTCTATTTTTCTGTGCT TTTGGACCAATATCAACCCCAACAAATCAAACACTAACCATCCGGTGAAGAAAAATAGAATTGAAGTAACGTATTTGTGT GGAGTTCAGTAGTAGTGTAACTTATAGAGGGTTATATCCACTGTTGAAGTTTTAGGATTATTATGGAAAAGCGTAATGAG AATTTGTTGTAAATATTACTGACCTCATATCTATATTTACACTAACAATCTAGGTCAAGTACGAAAATAGTACATGTGTA CTTGATTGAATGATATTGTCTTAGTGCTAATACTATAACTTACCAGATATTTGACATAGAATACCCTACTAATCTAACAT TGTATTGATATTTATTGATACTAACGTTTCTCATTAACGGATCATGTTTGATAATGGATTGTGATGCTTGATTTAACTAG AATGGTATCAATACCTTATTTACCAAAATCATATAATTATAATATCTTTCTTTCTTTTCCTGGTTGTGTATTATTACTAT TATCTTCATTATGTTTCTTTCCTGTGCAGCTGAGGAATTTGTTGTGGGCAACATCAAAGCATGATGTGTACCTTATGCAG AACTATTCAGTGATGCATTGGTCCTCACTACTCCGAAAGGGTAAAGAAGTGCTTAACGTAGCCAAACCAATTATTCCGAA CCTTGTACGTATCCATTTAGTTGATAAAATCTGCTTCTTTTGTATTCAATTGCATTGGATCTAAGTGTTCTGATATTATT TTGCAGAAGCGTACTGGCTTTTTAGCTCAACCTGTCTCCAGAGTGCAAGTAAGCACCATGGCTGTTAAGGAAAATCTGAT GGTGGCAGGTGGTTTCCATGGGGAGGTTATTTGTAAGGTAGGGTAAATCATGATTTCTTGCAATTGAATAATCAACTATA TGAAGGGCCCTTGTTTAATGCACGGATTATTTGTGTACCAGAATTTGAATCAGTCTGGAGTTGCATTCTGCAGTAAAATA ACTACAGATGACAATGCCATCACCAATGCTGTGGATGTTTTCCGCAATCCTGGGTAAGCATCTAAATGCAGAATCTTTGA ATTTGAAATTTTTGCTTTGGTTTGATTTGTAACCGAACCTTCACTTTGCAGTGGATCATTGAGGGTCATCGCAGCAAATA ATGACTCCCAAGTTCGGGTTTTTGATGCAGAGAATTTTGCTTCTCTTGGTTGTTTCAAGTATGTTTGGTCTGTCAACGTG AGTGTCATCAACTGATATTCCTATTACTAACTTCATCTCTAGGAACAGTATGCAAGTAACCATTATGTTTACATTTGCAG AATATTTCTGCTAGTCCGGACGGCAAGTCGTTAGCTGTTCTTGGGGACAGTACCGAGTGTTTGATAGCTGATGTTAATAC CGGGAAGGTATGTTTAACTTGCAGTTGTATTTTAGGTGTTATTATCCCTAATTTTTTGTTTAATATCTGATTTTATGCAT TTTACGGTGTCGCGTAGGTTACTGGGAGCCTAAAAGGACACTTGGACTATTCTTTTGCATCTGCTTGGCACCCAAATGGA CAAATATTGGCCACTGGGAATCAGGACACAACATGCAGGTTGTGGGACATTAGAAATCTTTCACAGTCCATGGCGGTGCT CAAGGGAAGAATGGGTGCAATAAGGGCCTTAAGGTTCACATCTGATGGAAGGTTTTTGGCCATGGCTGAACCAGCTGACT TCATCCATGTTTTTGACTCACATTCTGGATATGAGCAATGTCAAGAGATAGATATATTTGGTGAGATTGCTGGAGTATCG TTTAGCCCGGACACAGAGGCTCTGTTTGTTGGTGTTGCTGACCGAACCTACGGTAGCTTGTTAGAGTTCACCAGAAATCG TAATCATCATTATGTAGATACCATGTTTTAATGGAGTGGAGTGCCTTCAAGATGTACAGCGATCTGCTCCATGTTCATAT TTACCAGAGAGGATCTAGTATAGGTTTAATAATTAATATATGATTTTGCCAGGTCTCCTAGGTTATTTTGCTGTTGAATT TAGTGGAGAACGAGAGTTGTAAATTTTGGCTCTAGGAGCTGTTCCCTGAAGTTTTTTTCCTTTATAGTGTATGTTTTTTA ATCTTTCTACAATTGATTTAAGTAAAAATCAATTTTAGAGAGAATTTGTGTGAGTAGTTTCTTGTATAAGAATTGATTAT AAGAAAAGAGAAGTTAATCCAAATAT
CDS sequence (LotjaGi1g1v0244600.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTTGATTTAACTAGAATGGTATCAATACCTTATTTACCAAAATCATATAATTATAATATCTTTCTTTCTTTTCCTGG TTGTGTATTATTACTATTATCTTCATTATGTTTCTTTCCTGTGCAGCTGAGGAATTTGTTGTGGGCAACATCAAAGCATG ATGTGTACCTTATGCAGAACTATTCAGTGATGCATTGGTCCTCACTACTCCGAAAGGGTAAAGAAGTGCTTAACGTAGCC AAACCAATTATTCCGAACCTTAAGCGTACTGGCTTTTTAGCTCAACCTGTCTCCAGAGTGCAAGTAAGCACCATGGCTGT TAAGGAAAATCTGATGGTGGCAGGTGGTTTCCATGGGGAGGTTATTTGTAAGAATTTGAATCAGTCTGGAGTTGCATTCT GCAGTAAAATAACTACAGATGACAATGCCATCACCAATGCTGTGGATGTTTTCCGCAATCCTGGTGGATCATTGAGGGTC ATCGCAGCAAATAATGACTCCCAAGTTCGGGTTTTTGATGCAGAGAATTTTGCTTCTCTTGGTTGTTTCAAGTATGTTTG GTCTGTCAACAATATTTCTGCTAGTCCGGACGGCAAGTCGTTAGCTGTTCTTGGGGACAGTACCGAGTGTTTGATAGCTG ATGTTAATACCGGGAAGGTTACTGGGAGCCTAAAAGGACACTTGGACTATTCTTTTGCATCTGCTTGGCACCCAAATGGA CAAATATTGGCCACTGGGAATCAGGACACAACATGCAGGTTGTGGGACATTAGAAATCTTTCACAGTCCATGGCGGTGCT CAAGGGAAGAATGGGTGCAATAAGGGCCTTAAGGTTCACATCTGATGGAAGGTTTTTGGCCATGGCTGAACCAGCTGACT TCATCCATGTTTTTGACTCACATTCTGGATATGAGCAATGTCAAGAGATAGATATATTTGGTGAGATTGCTGGAGTATCG TTTAGCCCGGACACAGAGGCTCTGTTTGTTGGTGTTGCTGACCGAACCTACGGTAGCTTGTTAGAGTTCACCAGAAATCG TAATCATCATTATGTAGATACCATGTTTTAA
Protein sequence (LotjaGi1g1v0244600.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLDLTRMVSIPYLPKSYNYNIFLSFPGCVLLLLSSLCFFPVQLRNLLWATSKHDVYLMQNYSVMHWSSLLRKGKEVLNVA KPIIPNLKRTGFLAQPVSRVQVSTMAVKENLMVAGGFHGEVICKNLNQSGVAFCSKITTDDNAITNAVDVFRNPGGSLRV IAANNDSQVRVFDAENFASLGCFKYVWSVNNISASPDGKSLAVLGDSTECLIADVNTGKVTGSLKGHLDYSFASAWHPNG QILATGNQDTTCRLWDIRNLSQSMAVLKGRMGAIRALRFTSDGRFLAMAEPADFIHVFDSHSGYEQCQEIDIFGEIAGVS FSPDTEALFVGVADRTYGSLLEFTRNRNHHYVDTMF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 20 | 20 | - | – | |
| TMHMM | 21 | 43 | 23 | - | – | |
| Phobius | 21 | 41 | 21 | - | – | |
| PANTHER | 41 | 356 | 316 | 1.7E-192 | – | |
| PANTHER | 41 | 356 | 316 | 1.7E-192 | – | |
| Phobius | 42 | 356 | 315 | - | – | |
| Gene3D | 95 | 350 | 256 | 2.4E-31 | ||
| SUPERFAMILY | 97 | 336 | 240 | 1.65E-34 | ||
| SMART | 173 | 214 | 42 | 420.0 | ||
| ProSiteProfiles | 182 | 308 | 127 | 15.821 | ||
| SMART | 217 | 256 | 40 | 2.7E-7 | ||
| Pfam | 219 | 256 | 38 | 1.4E-5 | ||
| ProSiteProfiles | 224 | 265 | 42 | 13.884 | ||
| ProSitePatterns | 243 | 257 | 15 | - | ||
| SMART | 260 | 299 | 40 | 6.7 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0244600.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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