Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0249100 |
| Transcript ID | LotjaGi1g1v0249100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Serine hydroxymethyltransferase; TAIR: AT1G36370.1 serine hydroxymethyltransferase 7; Swiss-Prot: sp|Q84WV0|GLYC7_ARATH Serine hydroxymethyltransferase 7; TrEMBL-Plants: tr|G7J467|G7J467_MEDTR Serine hydroxymethyltransferase; Found in the gene: LotjaGi1g1v0249100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:59903784..59907624) extracted from Lotus japonicus Gifu genome v1.2.
CAAACGAATCTGGCCCTCATTCCGACCAGGTGCATCAAATTCTCACTCGCATCGCATCATTATCAAATCTTCCCCATAAA TAGTATTTAATTCGTTTGAATTCCACTCTTCTTCGCCAAAATTCCCACTCCTCTTCTTCTTCATTCATTCACCTCAATCT CATGCATCATCTGCATTATTCACTTCAATCCCAAACGACACCGTTTCCTTCTTGTTCTCTCTGTCCCTGTTGTTTCTCTT CAATTTTCCTTGTTTGATTCTTCCGGGTCGATCCATGGATTCTCAACCGGGTCTATCACTCGGGCTGAACGCTCCGACGC CATCGCCGCCGCCGACTGCTCATTCCGCCCTCTCTGCTCCGTGGCGTTTACACGACGAGAAACCCGAACCCGAACTCGAA GAAGAAGAAGAAGAAGAAGGAGAAGGTGAAACGATCAACTTCATGGGTAGACCTATGTGCTTGAAGAGGCACATAGAAGA AGAAGAACCACAACAACAACAATCGTGTTTCCCGGCGAAGCGCGTCGCGGTGGATTCCGCGGCGGAGGCGCGGCGAGGTT GGGGGAACCAGCCGCTGTGCGTTGCAGACCCTGAGATTCACGAGATCATGGAGAAGGAGAAATGGAGACAGTTCAGAGGG ATAGAGCTGATTGCGTCTGAGAATTTCGTGTGCAGGGCGGTGATGGAAGCTTTGGGTAGCCATTTGACGAACAAGTACTC TGAGGGAATGCCTGGAGCGAAGTACTATACTGGGAATCAGTACATTGATCAGATTGAGTTTCTTTGCTGTAAGCGTGCGT TGATGGCGTTTGATCTTGATTCCAACAATTGGGGTGTCAATGTTCAACCGTATTCATGTACTTCTGCGAATTTCGCTGTT TTTACTGGGCTTTTGCATCCTGGGGATAGGATTATGGGGCTTGATTCACCTTCTGGTGGGCATTTGAGTCATGGGTATTA TACTTTGGGTGGGAAGAAGGTTGCTGCTGCTTCCATTTTCTTTCAGACTTTGGCTTACAAGGTTAATCCTCAAACTGGGT ATATAGATTATGACAAGCTTGAGGAAAAAGCTGTGGATTTTCGACCTAAGATACTTATTTGTGGTGGAAGTTCTTATCCT AGAGAGTGGGATTATGGGAGGTTCAGGCAGATTGCTGATAAATGCGGGGCGGTGTTGATGTGTGACATGGCTCATATCAG TGGTCTTGTGGCAGCTAAGGTACTCTATGTTCTCTCTTATTTATGTACTAATCAAATCATGAACATTGCTTTTTTGTGAT CATGAGTTCTGATTTAGTTTTCTTTATATGGTAGAGGCAGTTGTATACTTTAGAACTTGTAAGATATAGTTTAGGTGTGT TGAACAATGAAGCTCCCTGTATTGTCAACATCTTTAGACTTGTTCCTGTCCTTCTCTGTTTGATGAAAGTAGAAATAATT TAAATGATTTTGATATTTAGCCACAGGAGTAGATATCCTGTTCAGTTCTTGCAGGTAGGAAGCATCAAAAGCAAAATTAT CTCTTCTTTGCTTTTTCCTATCCTTTCCTGATATTTATATGCTTGGTATTTTGATGAAATTGCCTTTTGCAATGGAAATT CTATATCAAATTGGTTAATTGTTTTTTATTTCCACTGATTCATGAAGCAAACTAAGGAACTCAGGTTTATTGTTTACATG TTTGGTGGAAGTCAAATTGCTTCTGTAGTTTCAGAAATCTACATCTTTTAAATGCTTGTGTGCCAAGTGTGCTGTTCTTT TTATATGTTTGCCTCTTTGTAAAGGATTTTAATTTTTCCATTCCGACTTTGAATATATTTTAAGTATATTGACAATTGTT TTAACAGGAAGGAGTTAGTCCATTTAATTACTGTGATATTGTTACTTCAACAACCCACAAAAGTCTCCGGGGTCCAAGGG GAGGTATCATCTTTTACAGAAAAGGGCCAAGACCAAGGAAGCAAGGGTCGGTTCATAATCACGGAGATGATATCAATTAT GATTTTGAGGAGAAGATAAACTTTGCATTATATCCATCATTACAAGGTGGACCCCACAATAATCACATTGCTGCTCTTGC CATATCTTTCAAACAAGTTGCAACTCCAGAGTACAAAGCATATATGCAGCAGGTGAAGAAAAATGCACAGGCATTAGCAT CTGCCTTGATGAGAAGAAAATGCAGATTGGTGACTGATGGGACGGACAATCATCTTTTGCTCTGGGATCTAACTGTGCTT GGCTTAATTGGTATTTTGTTTTTCAATCTGCCTCTTTTTTATATAAGTATATTTTATAATTACAACTGAATTTGAAATGA ATATGCTGTTTTTTCGTCAACGACAATGAGTTATTATTTGGATACTGATGGTGGGAAAAGATGCAATTACAGAAACGGCT TAACCTCCAGTATGCATGTCTTTGTGTCTGACTAACGACGCAACAATGAGTTATTATTTGTTTTACTGGGTATTTAAAAA AACTAATTTCAGTATGCATGTCTGTGTCTGATTAATGATTTTTTATACTCCTTTTCGCCTCTACTCAATTAATTTGTTTT TGAAGTTGGCATTAGCAAGGTCTCTTATATCATGTTATTATGTTTATACAGACAGAAACTATGAGAAGGTCTGTGAGGCT TGTCATATCACTATCAATAAATGTGCCATTTATGGTTCTATTTCCTCAGGAGGTGTGAGAATTGGTGAGTACCTCTCATA GTCTTATACTTATAGTATGTCTGAAGTCATTGTATTAGTACAGTTTCAATTTACGTGAGTTTTTCAGTCAAATGTGTTTG TAAGTGCACCAAATATCCCATGTTTGCTATGCCATTTAGTTTATCATTTACTGGTACATTCGTAGTTTGTAATTGTTAGG TAACAGCAAGTCTCTGATCAAAACTCTAAATAGAAGAATTTCCTATTAAGCTCCATTTTGTTAGAAAGTAAATGGCCTTT CATTCCACATATTTAGTTATGGTCCTTCAAATCTTTTAATTTCTAGGGAAGAGATGCAAAGAAAGGAAAACAGTACCTTA TGGCCACAGCCTCCCCCTTCCATGTGCAGGAGATCATAGATGATCCATGTCACATTTATTCATGGACTTAAAGTCAATTA TATTGCTGTATAGTTTCCAATTTCCATGTTTAAACAAATTACTGTTGAGTCTTCTGAATCCCCTTATTTTTTAATCTTTC CCTCAAGACCCTTCATTTCATTGGTATTCAGGCACTCCTGCAATGACAACAAGAGGCTGCTTAGAGAATGATTTTGAGAC CATAGCCGATTTTCTTCTGAGGGCAGCTGAGATTACTAGCATTATACAGAGGGAACATGGGAAATCGTGCAAGGAGTTTC TCAAGGGTCTTCAGAACAATAAAGATATTGCTGAGCTCAGAAATCGTGTTGAGACATTTAGTTCCCAGTTTGCAATGCCT GGATTTGATATTTGATTACGTCATGCCTTACCATGTTTTGCATTATCAAATTATTTTTTCCTTGATCTTATATCAAGTTA GCTCCTGTAAATTATACATATGCAGATGGAGTATAATCATCATGTGACGGCTATAGGTCACACTTCAGCTATTGTCCGCT TAGTACTTAGTGATTGTACAATTATTAAGGTTTGATACCCTTTTCTTGAACTACAACTTTTGTAGCTACCCTTTGTTTAT GAAGAAACTTCAGTAATTACGACACTACTTTAATATAAAATGGTGCTCATTTTGATATGTTATTTAATTTGAAGTGAGCT TGAATTTAATGTATAGTTGTCACTGCTATTCGCGTGTTTGGATCATCTTCTCTTTCCTCAGAATCAATTCTATAACTCAG A
CDS sequence (LotjaGi1g1v0249100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATTCTCAACCGGGTCTATCACTCGGGCTGAACGCTCCGACGCCATCGCCGCCGCCGACTGCTCATTCCGCCCTCTC TGCTCCGTGGCGTTTACACGACGAGAAACCCGAACCCGAACTCGAAGAAGAAGAAGAAGAAGAAGGAGAAGGTGAAACGA TCAACTTCATGGGTAGACCTATGTGCTTGAAGAGGCACATAGAAGAAGAAGAACCACAACAACAACAATCGTGTTTCCCG GCGAAGCGCGTCGCGGTGGATTCCGCGGCGGAGGCGCGGCGAGGTTGGGGGAACCAGCCGCTGTGCGTTGCAGACCCTGA GATTCACGAGATCATGGAGAAGGAGAAATGGAGACAGTTCAGAGGGATAGAGCTGATTGCGTCTGAGAATTTCGTGTGCA GGGCGGTGATGGAAGCTTTGGGTAGCCATTTGACGAACAAGTACTCTGAGGGAATGCCTGGAGCGAAGTACTATACTGGG AATCAGTACATTGATCAGATTGAGTTTCTTTGCTGTAAGCGTGCGTTGATGGCGTTTGATCTTGATTCCAACAATTGGGG TGTCAATGTTCAACCGTATTCATGTACTTCTGCGAATTTCGCTGTTTTTACTGGGCTTTTGCATCCTGGGGATAGGATTA TGGGGCTTGATTCACCTTCTGGTGGGCATTTGAGTCATGGGTATTATACTTTGGGTGGGAAGAAGGTTGCTGCTGCTTCC ATTTTCTTTCAGACTTTGGCTTACAAGGTTAATCCTCAAACTGGGTATATAGATTATGACAAGCTTGAGGAAAAAGCTGT GGATTTTCGACCTAAGATACTTATTTGTGGTGGAAGTTCTTATCCTAGAGAGTGGGATTATGGGAGGTTCAGGCAGATTG CTGATAAATGCGGGGCGGTGTTGATGTGTGACATGGCTCATATCAGTGGTCTTGTGGCAGCTAAGGAAGGAGTTAGTCCA TTTAATTACTGTGATATTGTTACTTCAACAACCCACAAAAGTCTCCGGGGTCCAAGGGGAGGTATCATCTTTTACAGAAA AGGGCCAAGACCAAGGAAGCAAGGGTCGGTTCATAATCACGGAGATGATATCAATTATGATTTTGAGGAGAAGATAAACT TTGCATTATATCCATCATTACAAGGTGGACCCCACAATAATCACATTGCTGCTCTTGCCATATCTTTCAAACAAGTTGCA ACTCCAGAGTACAAAGCATATATGCAGCAGGTGAAGAAAAATGCACAGGCATTAGCATCTGCCTTGATGAGAAGAAAATG CAGATTGGTGACTGATGGGACGGACAATCATCTTTTGCTCTGGGATCTAACTGTGCTTGGCTTAATTGACAGAAACTATG AGAAGGTCTGTGAGGCTTGTCATATCACTATCAATAAATGTGCCATTTATGGTTCTATTTCCTCAGGAGGTGTGAGAATT GGCACTCCTGCAATGACAACAAGAGGCTGCTTAGAGAATGATTTTGAGACCATAGCCGATTTTCTTCTGAGGGCAGCTGA GATTACTAGCATTATACAGAGGGAACATGGGAAATCGTGCAAGGAGTTTCTCAAGGGTCTTCAGAACAATAAAGATATTG CTGAGCTCAGAAATCGTGTTGAGACATTTAGTTCCCAGTTTGCAATGCCTGGATTTGATATTTGA
Protein sequence (LotjaGi1g1v0249100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDSQPGLSLGLNAPTPSPPPTAHSALSAPWRLHDEKPEPELEEEEEEEGEGETINFMGRPMCLKRHIEEEEPQQQQSCFP AKRVAVDSAAEARRGWGNQPLCVADPEIHEIMEKEKWRQFRGIELIASENFVCRAVMEALGSHLTNKYSEGMPGAKYYTG NQYIDQIEFLCCKRALMAFDLDSNNWGVNVQPYSCTSANFAVFTGLLHPGDRIMGLDSPSGGHLSHGYYTLGGKKVAAAS IFFQTLAYKVNPQTGYIDYDKLEEKAVDFRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLVAAKEGVSP FNYCDIVTSTTHKSLRGPRGGIIFYRKGPRPRKQGSVHNHGDDINYDFEEKINFALYPSLQGGPHNNHIAALAISFKQVA TPEYKAYMQQVKKNAQALASALMRRKCRLVTDGTDNHLLLWDLTVLGLIDRNYEKVCEACHITINKCAIYGSISSGGVRI GTPAMTTRGCLENDFETIADFLLRAAEITSIIQREHGKSCKEFLKGLQNNKDIAELRNRVETFSSQFAMPGFDI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 53 | 53 | - | – | |
| PANTHER | 72 | 554 | 483 | 0.0 | – | |
| PANTHER | 72 | 554 | 483 | 0.0 | ||
| SUPERFAMILY | 97 | 551 | 455 | 2.36E-160 | ||
| Hamap | 100 | 551 | 452 | 38.395 | ||
| Pfam | 104 | 501 | 398 | 9.6E-163 | ||
| Gene3D | 105 | 550 | 446 | 2.5E-196 | ||
| CDD | 105 | 543 | 439 | 0.0 | ||
| Gene3D | 130 | 409 | 280 | 2.5E-196 | ||
| ProSitePatterns | 325 | 341 | 17 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
| Molecular function | Glycine hydroxymethyltransferase activity | Catalysis of the reaction: 5,10-methylenetetrahydrofolate + glycine + H2O = tetrahydrofolate + L-serine. | ||
| Biological process | Glycine biosynthetic process from serine | The chemical reactions and pathways resulting in the formation of glycine from other compounds, including serine. | ||
| Molecular function | Pyridoxal phosphate binding | Interacting selectively and non-covalently with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6. | ||
| Biological process | Tetrahydrofolate interconversion | The chemical reactions and pathways by which one-carbon (C1) units are transferred between tetrahydrofolate molecules, to synthesise other tetrahydrofolate molecules. |
Expression pattern of LotjaGi1g1v0249100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…