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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0255400 |
| Transcript ID | LotjaGi1g1v0255400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein; TAIR: AT4G08210.1 Pentatricopeptide repeat (PPR-like) superfamily protein; Swiss-Prot: sp|Q9SUF9|PP305_ARATH Pentatricopeptide repeat-containing protein At4g08210; TrEMBL-Plants: tr|I1KA62|I1KA62_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0255400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:61653934..61657828) extracted from Lotus japonicus Gifu genome v1.2.
AAACGTTACAAGTTTCTCGTAGTTTAAAACCGCCAGAAACTGTCTCGTGCACATTTCACGAAAAACTTGTCGTACCATTC AGCATTTTCCATCAAAAATTAAGCCCAACAAAATTATCACGCGGCAAAAACAAGTGTATACGGTATACCACTAACTGTTT TGAAGGTTGTCCTCTCAACAATGCTCAGAGTTTGGTAATTCAACGGCAATGGTTGTGCAATGGATTTGAATCATATCCAG TTTGCTTTACGCTATTGCAGACGCTTTAGAGCTATCAAACATGCCAAATCACTCCATTCGTATATGATAAAATCTGGACT TTTCAACCATGTTTTTCTCCTAAACAACATGATCTCTGTCTATGCAAAGTGTTCAAGTTTCCATGATGCACGAGCCCTGT TCGACGAAATGCCTCACAGGAACATTGTTTCTTGGACAACAATGGTCTCTACACTCACCAATTCTGGGAAGCCCCATGAG GCTCTTACACTCTACAACGAGATGCTGGAATCCAGAACTGAGCATCCCAATCAATTCTTGTACTCTGCGGTTCTCAAGGC GTGTGGTATCGTGGGAGATGTTGAATTGGGCAAGTTGGTTCACCTCCATATATCTGAAGATAAGCTAGAGTTTGACACTG TTTTGATGAATGCCCTGTTGGACATGTACATCAAATGTGGGAGCTTGAGTGATGCCGAACGAGTTTTCTATGAAATCCCG CGTAAAAATTCCACCTCATGGAACACCCTCATTCTGGGGCATGCCAAACAAGGGTTGATGGGTGATGCGCTGAAACTGTT TGATCAAATGCTGGAACCAGATCTTGTATCTTGGAATAGCATGATTGCTGGTCTGGCAGATAATGCTAGTCACCATGCAT TGCAGTTTGTTTCTATGATGCACCTGAAGGGCCTTAAACTAGATGAGTTCACATTCCCCTGTGCCCTTAAAGCCTGTGGT CTTTGTGGTGAGTCAACCTTAGGGAGACAGATTCATTGTTATATTATCAAGTCGGGGTTTGAGTCTTGCTGTTACTGTAT ATCGGCGTTAATTAATATGTATTCGAATTGCAAGCTATTGGATGAAGCAAGGAAGATATTTGATCAATTCTTTAGGAACT CTCGTGTTTCTGAAAGCTTGGCACTGTGGAATTCTATGATCACTGGGTATGTTGCCAATGAGGATTATGCAAATGCTCTC AGTCTGATTGCTCGTATGCATTATTCTGGTGTACAATTTGATTTTCATACCTTCAGTGTTGCTTTAAAGGTCTGCATCTA CTTCCATTACTTGAAATTGGCATCTCAAGTGCATGGATTGGTCATCACCAGTGGTCATGAGTTAGATTGTGTTGTTGGAA GCATTCTTATTGATCTATATGCGATACAGGGTAATATTAACAATGCATTAAGATTGTTTGAAAGGCTTCCGGATAAAGAT GTTGTGGCCTGGTCCAGTTTGATTGCTGGTTGTGCTAGATTTGGGTCAGAAACATTAGCTTTTTCCCTCTTTATGGATAT GGTTCATTTGGGTCTTGAGATAGACCATTTTGTCCTTTCAATTGTTCTGAAAGTTTCTTCAAGATTGGCATCACATCAAA GTGGCAAGCAAATTCATGCTTTATGTCTTAAGAAAGGGTATGAATCTGAGACAGTTATTACAACTGCTCTTATTGATATG TATGCAAAATGTGGTCAAATTGAGGACGCCTTGGCTTTGGTTCATTGTCTTTCGGAAATAGATACCATGTGTTGGACAGG AATTATTGTGGGATGTGCACAAAATGGAAGAGCAGTTGAGGCAGTTAGTCTTCTGCATAAGATGGTAGAATCTGGTACGC AGCCAAACGAAGTCACCATTCTAGGTGTCCTTACTGCATGCAGACATGCTGGTCTAGTTGAAGAGGCATGTGCTATATTT AGTTCTATTGAAACAGAGTATGGATTGACACCAGGCCCAGAACATTACAATTGTATGGTTGATTTACTTGGTCAAGCAGG ACATCTGAAAGAAGCACAAAAACTGATCACTGACATGCCATTTAAGCCTGACAAAACTATATGGTGCTCCTTGCTTGGTG CCTGTGAAATTCACAAGAACCGATATCTTGCAAATATTGTTGCTGAGCATCTTCTTGCTACCTCACCAGAAGATGTTTCT GTACATATAATGCTGTCAAATGTTTATGCAGCCCTTGGAATGTGGGATAGTTTGAGTAAGGTAAGAGAAGCTGTCAAAAG AGTAGGCATAAAACAAGCTGGAAAAAGCTGGATTGAGATCTCTAGTTGAGAATGCTAAACTTGTGAATGGCTAGGTTAAT CGTCATACATAAGGCATTTCCGGATGAGTCACTCATTTTCTAGCATATAAGGACTGGTATGTGACTGAAATCTGAATTGT GAAAGGCCGTCTCAGGTTATGGTGATTGCATCAGCTCAATTAGAAGGTAAAAGCGTGGAAGTGTCAATTTTTCAACGAAT TTTAGATAGGAGAAACTGCATCAAAGACTACAACATTACGTACAATGAATGCAGCAGTTCAATCTAATAAGCTTTCCATG CCTACAATTGTCACGAGGTTTCTCACATCCATTGTTTGCTTTCCCTCCAAATAAAGTTAGAAACTAAAAAGGTAAATTCA ATTTTACTTTTAATACTATTTATCCCTTTTGTAAATTGAACTAGTTTTAATTTTAAACATCAATTAATCACTTTCAGTTT CATATTGATAACATCACAATTAAACTTATACCACTAACTAATCCAATTAGCAACTTTTTGTATTAAGCACTCATTGCCAG AGGTTAACTCTAATAGGTATATTAAAATCAGAGGTGGCTTTTTTACCACTTGCAAATGCATCTCAGATCATGTCATTTTT AAACAGGTATATTAATTCCCTATCCTTCTAAATTATTTTCGGCTTTTTTGTGCTCAAGTATTGTAATTAAACAAAGTTAC TCTTTATGAATTTTTTATGCTGTATTCATTGCTGTTTGCAGAAAGTCATCGGGTCTCAGCTCATCTTTTAGCATGGTTGA GCAGCTTTTAACATTTTCAGCTTTTATTTGACAAGCTTCATTCTGATGCACATGTGGTGAGATCAGCTTTTTTTCTTTCC TTTCACCTTTGTATAGTGAATTCTGTCAATAAAATTTTCTAAAAGGGGTTTGAGATATGATAATAATGTAGACTTATTGA AAAATGTTATGATAATTACAATAGTTAATCTATGATGACAGAAAAAATAGTTAGGCTTTTGATGTATATAACATAATAAT TGCCTTGGTTTTAATTCCAAATGTTCAGTTTCCAGGTTCTTCTTTCTGAACTTGTTCTGTCTTTTGTTATTTTTTTTATA ACTGGACCTAACAGTGAAGTGATGATACTTTTCACCCTCTTTTTGCCTTTCGTTGCTCTGTCCAATTGCCCAAGGTGGAA GAACAGATTGAGACACCACTAGGCTGCACGGGGTTATGTTGGGTTGGGCATAAACCTTTCTTGAGCTGTCTACCACTTTT TTTAATATTTGACCAGAGAGGATGTTGACTATCTGGTCAGAAGCAAACAAGGATTGAACACCCCTAATAGTTTGATTTGC AACAATTTTTTCATAAGCGAAAATCTTTTATTACGTTTTTACTTGAACTGATTTGTATGAAAAGCAAGAAAAAAATGTCA TTTATGCCAGGAGTTAAATGTTATACATTAGGCTTGGCCGTGATTAGAACTGCACCCGGCGACATCTTTGGCATTTCCAT GCCATACTGTTAGGAATGAGTAGGGCCAGTTTGTATATGTTGAGATATGTAGATAAAATAAATAGGGATAAATATATTTA GTATATTTTATCTTTTATTAGGATAAATCTTTTCCTTATTTAGCTATCCCTAAAC
CDS sequence (LotjaGi1g1v0255400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATTTGAATCATATCCAGTTTGCTTTACGCTATTGCAGACGCTTTAGAGCTATCAAACATGCCAAATCACTCCATTC GTATATGATAAAATCTGGACTTTTCAACCATGTTTTTCTCCTAAACAACATGATCTCTGTCTATGCAAAGTGTTCAAGTT TCCATGATGCACGAGCCCTGTTCGACGAAATGCCTCACAGGAACATTGTTTCTTGGACAACAATGGTCTCTACACTCACC AATTCTGGGAAGCCCCATGAGGCTCTTACACTCTACAACGAGATGCTGGAATCCAGAACTGAGCATCCCAATCAATTCTT GTACTCTGCGGTTCTCAAGGCGTGTGGTATCGTGGGAGATGTTGAATTGGGCAAGTTGGTTCACCTCCATATATCTGAAG ATAAGCTAGAGTTTGACACTGTTTTGATGAATGCCCTGTTGGACATGTACATCAAATGTGGGAGCTTGAGTGATGCCGAA CGAGTTTTCTATGAAATCCCGCGTAAAAATTCCACCTCATGGAACACCCTCATTCTGGGGCATGCCAAACAAGGGTTGAT GGGTGATGCGCTGAAACTGTTTGATCAAATGCTGGAACCAGATCTTGTATCTTGGAATAGCATGATTGCTGGTCTGGCAG ATAATGCTAGTCACCATGCATTGCAGTTTGTTTCTATGATGCACCTGAAGGGCCTTAAACTAGATGAGTTCACATTCCCC TGTGCCCTTAAAGCCTGTGGTCTTTGTGGTGAGTCAACCTTAGGGAGACAGATTCATTGTTATATTATCAAGTCGGGGTT TGAGTCTTGCTGTTACTGTATATCGGCGTTAATTAATATGTATTCGAATTGCAAGCTATTGGATGAAGCAAGGAAGATAT TTGATCAATTCTTTAGGAACTCTCGTGTTTCTGAAAGCTTGGCACTGTGGAATTCTATGATCACTGGGTATGTTGCCAAT GAGGATTATGCAAATGCTCTCAGTCTGATTGCTCGTATGCATTATTCTGGTGTACAATTTGATTTTCATACCTTCAGTGT TGCTTTAAAGGTCTGCATCTACTTCCATTACTTGAAATTGGCATCTCAAGTGCATGGATTGGTCATCACCAGTGGTCATG AGTTAGATTGTGTTGTTGGAAGCATTCTTATTGATCTATATGCGATACAGGGTAATATTAACAATGCATTAAGATTGTTT GAAAGGCTTCCGGATAAAGATGTTGTGGCCTGGTCCAGTTTGATTGCTGGTTGTGCTAGATTTGGGTCAGAAACATTAGC TTTTTCCCTCTTTATGGATATGGTTCATTTGGGTCTTGAGATAGACCATTTTGTCCTTTCAATTGTTCTGAAAGTTTCTT CAAGATTGGCATCACATCAAAGTGGCAAGCAAATTCATGCTTTATGTCTTAAGAAAGGGTATGAATCTGAGACAGTTATT ACAACTGCTCTTATTGATATGTATGCAAAATGTGGTCAAATTGAGGACGCCTTGGCTTTGGTTCATTGTCTTTCGGAAAT AGATACCATGTGTTGGACAGGAATTATTGTGGGATGTGCACAAAATGGAAGAGCAGTTGAGGCAGTTAGTCTTCTGCATA AGATGGTAGAATCTGGTACGCAGCCAAACGAAGTCACCATTCTAGGTGTCCTTACTGCATGCAGACATGCTGGTCTAGTT GAAGAGGCATGTGCTATATTTAGTTCTATTGAAACAGAGTATGGATTGACACCAGGCCCAGAACATTACAATTGTATGGT TGATTTACTTGGTCAAGCAGGACATCTGAAAGAAGCACAAAAACTGATCACTGACATGCCATTTAAGCCTGACAAAACTA TATGGTGCTCCTTGCTTGGTGCCTGTGAAATTCACAAGAACCGATATCTTGCAAATATTGTTGCTGAGCATCTTCTTGCT ACCTCACCAGAAGATGTTTCTGTACATATAATGCTGTCAAATGTTTATGCAGCCCTTGGAATGTGGGATAGTTTGAGTAA GGTAAGAGAAGCTGTCAAAAGAGTAGGCATAAAACAAGCTGGAAAAAGCTGGATTGAGATCTCTAGTTGA
Protein sequence (LotjaGi1g1v0255400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDLNHIQFALRYCRRFRAIKHAKSLHSYMIKSGLFNHVFLLNNMISVYAKCSSFHDARALFDEMPHRNIVSWTTMVSTLT NSGKPHEALTLYNEMLESRTEHPNQFLYSAVLKACGIVGDVELGKLVHLHISEDKLEFDTVLMNALLDMYIKCGSLSDAE RVFYEIPRKNSTSWNTLILGHAKQGLMGDALKLFDQMLEPDLVSWNSMIAGLADNASHHALQFVSMMHLKGLKLDEFTFP CALKACGLCGESTLGRQIHCYIIKSGFESCCYCISALINMYSNCKLLDEARKIFDQFFRNSRVSESLALWNSMITGYVAN EDYANALSLIARMHYSGVQFDFHTFSVALKVCIYFHYLKLASQVHGLVITSGHELDCVVGSILIDLYAIQGNINNALRLF ERLPDKDVVAWSSLIAGCARFGSETLAFSLFMDMVHLGLEIDHFVLSIVLKVSSRLASHQSGKQIHALCLKKGYESETVI TTALIDMYAKCGQIEDALALVHCLSEIDTMCWTGIIVGCAQNGRAVEAVSLLHKMVESGTQPNEVTILGVLTACRHAGLV EEACAIFSSIETEYGLTPGPEHYNCMVDLLGQAGHLKEAQKLITDMPFKPDKTIWCSLLGACEIHKNRYLANIVAEHLLA TSPEDVSVHIMLSNVYAALGMWDSLSKVREAVKRVGIKQAGKSWIEISS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 123 | 123 | 2.4E-23 | ||
| PANTHER | 11 | 125 | 115 | 6.7E-126 | – | |
| ProSiteProfiles | 37 | 67 | 31 | 8.002 | ||
| SUPERFAMILY | 39 | 664 | 626 | 3.29E-6 | ||
| TIGRFAM | 42 | 70 | 29 | 2.0E-4 | ||
| Pfam | 68 | 115 | 48 | 1.2E-7 | ||
| ProSiteProfiles | 68 | 102 | 35 | 10.052 | ||
| TIGRFAM | 70 | 100 | 31 | 9.6E-6 | ||
| ProSiteProfiles | 104 | 138 | 35 | 6.27 | ||
| Gene3D | 124 | 246 | 123 | 2.4E-25 | ||
| PANTHER | 127 | 201 | 75 | 6.7E-126 | – | |
| ProSiteProfiles | 139 | 169 | 31 | 8.78 | ||
| Pfam | 142 | 170 | 29 | 0.01 | ||
| ProSiteProfiles | 170 | 204 | 35 | 10.633 | ||
| TIGRFAM | 173 | 199 | 27 | 2.5E-5 | ||
| Pfam | 173 | 199 | 27 | 4.9E-6 | ||
| PANTHER | 204 | 354 | 151 | 6.7E-126 | – | |
| ProSiteProfiles | 235 | 269 | 35 | 6.697 | ||
| Gene3D | 247 | 355 | 109 | 4.7E-17 | ||
| ProSiteProfiles | 270 | 304 | 35 | 6.785 | ||
| Pfam | 275 | 296 | 22 | 0.095 | ||
| ProSiteProfiles | 306 | 340 | 35 | 8.758 | ||
| Pfam | 310 | 338 | 29 | 9.9E-4 | ||
| ProSiteProfiles | 341 | 375 | 35 | 5.064 | ||
| PANTHER | 344 | 454 | 111 | 6.7E-126 | – | |
| Gene3D | 356 | 456 | 101 | 1.4E-15 | ||
| ProSiteProfiles | 376 | 406 | 31 | 6.928 | ||
| Pfam | 381 | 407 | 27 | 0.3 | ||
| ProSiteProfiles | 407 | 441 | 35 | 9.679 | ||
| Pfam | 409 | 438 | 30 | 0.0011 | ||
| PANTHER | 447 | 672 | 226 | 6.7E-126 | – | |
| Gene3D | 457 | 573 | 117 | 4.0E-23 | ||
| ProSiteProfiles | 477 | 507 | 31 | 6.643 | ||
| Pfam | 482 | 502 | 21 | 0.025 | ||
| ProSiteProfiles | 508 | 542 | 35 | 10.797 | ||
| TIGRFAM | 511 | 544 | 34 | 3.3E-6 | ||
| Pfam | 511 | 539 | 29 | 7.3E-5 | ||
| ProSiteProfiles | 543 | 578 | 36 | 6.686 | ||
| Gene3D | 574 | 689 | 116 | 4.5E-9 | ||
| ProSiteProfiles | 579 | 609 | 31 | 7.585 | ||
| Pfam | 582 | 606 | 25 | 0.011 | ||
| ProSiteProfiles | 645 | 679 | 35 | 6.204 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0255400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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