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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0261300 |
| Transcript ID | LotjaGi1g1v0261300.2 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RING/U-box superfamily protein, putative; TAIR: AT1G68070.1 Zinc finger, C3HC4 type (RING finger) family protein; Swiss-Prot: sp|Q8LPN7|RNG1L_ARATH E3 ubiquitin-protein ligase RING1-like; TrEMBL-Plants: tr|A0A1J7H5C8|A0A1J7H5C8_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0261300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:63952005..63960524) extracted from Lotus japonicus Gifu genome v1.2.
CTCACTCTCAGAACTGAGAACTCGTTCCATGGAGCTTACGATTTCAAGAGATTTCCACCGATTTCTCCTCGTTTTGCACC GATTTGATCTCGTTTTGCACCTATTTGATCTCGTTTTCCACCAATTTCCACAGATTTCAACCACCGCACGCCGCCGTAGC AACAGCCTCCTCCGCCGTCGGTATGACCTCGTTTTCCTCCGATTTGATCTCGTTTTGCACCTTTGCTTTTCGTTGCTATT TAATTCGCAGTTCATTCATTCGCAGTTCTCTCTGCGATTTTCTCATGGATGCATCGCTCAGAGACTCAACAACCTCTACT CCGTCGCATGCTGCACTCTCTGGTACCGATTTTTTTCTTAATTAACCCATTCAGATTTCTAAATTAGGTTTTCATTCTCT GGTGTGAAGTCTGGTTGATCGGTTATTCTTTAGGTTTTATTTCATTGAGCACATTGATCCTGATCCTTCACTTGGCTTCT GCTATTTTGATTTGTTTTGTTTTGAAGTTTATGCCTGTATTTAGAACCTAATGGAAATCCTTTTTGAGTATTCGATATAA AACTTTTCCATGTACATGTGATTACTGAGTTCTATGATGAAATTGCGAGGACCCGTGATGGGTAGTTTGCTGAAGAGGTC TGTGTACATGTATGTATTATCTGATCCACCTAGTCTTTGGTGTTTTTCCATGTTATATTATATGATTGCATGTTGTGCTG CTTTTAAAGTCCCCCCCACTGTAGGATATGGGGAAATCCAACTCTGACTATCGTTTAGTTATATAAAGCTATGAGCAACT TTCTTATATTTATAAGGTTGCTGTTGGATGGAATCAAAGGTTGCTCTAATCCAGTCACCTTTTGATGTTTTAATAGTATT GCGATAGCACTCAAGAAATTCTTACTAACCCATGTGATGGAACATGTATTATTTTCTAAATCAGATTTATGCCTCGTAAT TTCCTGAATGTGTTTGGACTTTGGAGTTATAAATTACTAATCATGCTTTTTAGAATTTAAAGGAATTTTGATTCTTATTA TTGGAGTTTTGGGATGTTTAAGTTCTTAGTTCACAAACCATTGCTTAACATAAATAGTGATCTTGTAGGAGAGGCCTGTG ATACTGTAGTTTTGGCTCACTTTCAATTTGTGATCCGGGCAGATTGACATTAGATCAAAGGGGCAAGCCTTTGGTTAAAC CTATGTATCCAATTGAAACTTGAAAGGGTCATTTTTATATTTCCTGAATTCAACATATTCAGGTTGAATATATGCTTGAC TTTGTAGGGCCTAGTCACCTTTCACCTGCTTGCAAATTGAAATCCTGTAAACATTAGGATGTCTTAAAATTGACTTATTT TGAAGACCAGAAAATTAAAAGCAGAATGGCTTGTACTCTCTGTTAAATTTGTGTTTTATTTTCAATTTTGCTTTAGTGCA TTGTGACAAAACAACAGAATCCACATTGATTAAGAGATGAGAAGTTCTCTGCAACCAGAAAGATGCAGCATAAGATTTGA TAGTGAAAATGAGAGTTGCATCCCAACCAGAAAAATTAGAACCCTGCTTTCCTGCACGTCTAATTCACGGGATATTTGCT TTCACTTCATTTCACCCCTAAATCAAAATCCAAATGTCAACTTCCTAAAGTGGTGGCCTAGTCAATTTAGTGCTTGTAAA AGCAGAATGACTTTTACAAGCACTAAAGCAAAATTGTCTACCTTGTCAATTCATAAATTTGTGTTTTATTTTGATAGAAA AAGCGAATGGCTTGTACTCTCTGTTAACGTTTTCACTCATTTTTACACTAGTAAGTAGTAACATATCCAAAATGCTTATT AATATATTGTGGATTGGGATAAGATGTTTAATCTATGTGAAATTTCTTTCTTGGTAGTTTTAGTCCATCCCTTGTCTCAC AGTATATTTATAGTTACATGAACTTAGATATCTATACTTTATGTGCTTATGAGACTGAGAGTACTTTAATCCTTTCCTTT AGTGCTTGTAAATTTCAAGCTGAAAGTTCTGTTTGTAGTATCTATTATGCTTACTGATTCATCAAGCAATGGTTTTGTTG TCTACTATGAATGAAAATACATATTGAGATATGAGTGAGAATACAGTTTCCATTTTATATTGAGTTGTTCTAAGTCTTAT TTCATTGGTTTTGACCTTCCTCATTCGTTTCAGAGAAACAAGATTGATTGGTTGATTGGTTGATTAGAGGCAAAACACAC AATCTACGAAACTGTGTATTAGATTAGCATCCTCGTAAGTATTCAAATCTGAATCTTAATGCAGTTTTGTGATTACATTA TTCTCTTTGTCATTTTTGTAATCTGAGATTGTGTTGTTGTTTTGCTCTTTATATTGATGCCCTCTTCTTTAGCTTATCTT ATGACATAAGTAATTATGGAAGTGTCTTGATAAGCTTATATATACAATTAGCTTATGATATTATCCTATTAACTTATTTT AGCTTATTTCTAAATTTCTTGTATTAACTTATGATAAGTACTTATATCAACCTATAAGCTATTTCGAGCTTATTTCAATA AGCTTCTCAAATAAGCTTATGAATATGTGTTTATGTGATAAGTACTCAGGTTGCCTTGTTAATATATAATACAACATTAA GCCAATGAAAGTAAGTAACACATGCATAATTCAATACCCTACTACCTAGCCTATGTTCAGTTCAAAAGGTAACTTTTTAG ATGCAAAAGCATTTCTGGTGCCTGCCTCCTAAAGAGCTGTTGACTTCATTACTATCTATTAATTCATGGAGAGCTGATCG GAGATTGTTGGCTGTTCCTGAAGATATTGAGAGAGTGCTGGTTGGTGTTGAGGCTTACTAGAGCATCAGAAGGCATAATT TTGACACTGGTTTATCCTTCTTTGAGAGTGATGATGAAATTGAGAGAGATGGTAACAATACTTTTTCATGAGTTCTTGGT CTGTTCCTTGAGCAACATATCATTATCAGTTTCTGAGCTGTATATGTCATTATGTGATGATATTTCCCCACATACATATG TTTGTTTTTCGTTGTGTTAGGATGATATTTCCCCACATATGAGATTCGATTTTCATACATTAGTTGACATGTTGTTTCAT GCTACAATATTGAATGCACAGTTGTTGGGCCAGCATCTTTTTTGTTAGCTTAACCATTTAAATAACTAGTTCTGTGCTTC TGTCTTGAAGTTGGGATGTTTTAAATCTTTATGTGGAGGATAATATAAATACACAATCCAGATTCAGTTCTGTATTCTGT CATCCTGAATTTTGGACAATTAGTTACCTAGTTTTTTTAATGTTAAGCTCATGATGCGCATTCACTTTCAATTTTCTTCC TTTGTCTTCAGGAGCCTGTGAAGACCAAGCATCCTCAACTGCACTATGAGTCAAAATTGTATATGCTTCTTCAAGAGGGT AGTAAGTTTTTATGCTTTTTCTCCCTCTTCCCAATTTATACACCTTCATGTTCTTTCTTGTAGGCAAGACATGTGTTTGT AGCTTTACAGTCATAAAGTAAACTTGTCTTAAAAATTTGTTCATTTGTTAATTTTTATTTGTTGAAGCTGGGGTGCCCCA TATAAAATGGTATGGAGTTGAGGGCAACTACAATGTCATGGTTATTGACCTTCTTGGACCAAGTCTTGAAGACTTATTTA ACTATTGCAATAGGAAATTCTCTCTGAAAACAGTCCTGATGCTAGCTGATCAGCTAGTATGACTTTAATTTCAAAAAAAC TATGCTTGTAACAGAAAGCTACTGTGTTCTCACACTTCCCCCAATTTTATATGCCTTTGTGTATAACAGAAAGTTGAGTA CATGCATTCCTGGAGCTTTCTGCACTGTGATATAAAGCCTGATAACTTCTTAATGGATTTAGGACGTAAGGCAAATCAGG TATCTTGTGTATCCGGAACTAGCTCTTTTCTGGTACGACCAGTGTTTCAATCTTCTATTGATAATGGTACTGGCTTGATA AAACTTATGGGAGTTTATTCTGTTGCCCTCAACCAGAGCCTGGGTTGCAGCTGTGGCCAACAAACTAAGAGGTAAAGGCA TTAGCTTGTTTACATATTTTTTACATCATATTATTTGATTGTGAAACGCAACACTTCATAAATTCACAATTTCTTATGTT TTTTTACATCATATTACATAGTTGATCTGTAGATTGTAAGATATAAAAGAAGTACTATGAAAATAATTGGTATACAGGTT TGTTTACAACTCAATCTTGCTCGATTGATAGGTGGTTCAGAGTTGAGATGAAATTGCACTAGATTTACTTCTATTTAGCA TTTAGATGTTACCATCATATTACATAACCTGTGCTTTTTTGTTGTTGTTATCTTGTTACAAAATTCATTGATTAGCACAG ACTTCTATGTGGGAAGAGTGCAATAGAGCTAGTCTTTAAACCATGTCACATTACATTGGTAATTTGCAATAGAGCTTTAT TAATTCATATTATGTGCATTTAAAATTAATATTTGTAGGATGTTTAGAAAATCACTTTAAATGGTTAAAAAGTATACTCC ACAATTAAATGAGGTTAAAAATGTCCCTAGAATAAACTCTGGTAGCCAAGGGAGGGTTAAGGGAGGCTTAAAACTGTAAA TAATCTCTTGCATGTAAGGGAGTTTAAAACTCCCGTTAAAAAAAAGCTTGCGGATAAGGGAGGTTTAAAACCCCCGCAAA AAACCGCCGCTAAATCCATATGCAGTACCAGGGTTTGCTAAAAAACGCCGCTAATAATTTGTGGCGAGTGTAACTTTGGG ATTTTTCAAAACCCCCTCTAAGTAACTCGCGGGGCTAAGTATAAAAAAAAACCCCACTAAATAACGTTTTTTTTTTGTAG TGCATGTAGAGCAATACGTTTCAAAAGATTGTAAACTGCATCAGCAGTGCCAGGACGGATTACAGAGCTCTAATCCAGAT TCACTTATCACGGGTAATTTGCTAAATGAGTATACTGCTTTTAGTTTACATCCTTTGGCTTAAATATGTTTTTATTCCTT ATAATATACCCTCTTTCCATTTTTAGTCTTTTTAAAAAAAAAAGTTTTCCATCCTCAACATATCAAACGATATGTTTTTT TAGTCATTGACATCAAATTTTCCACAAAAGGTTACAATAAAAATAACACCAAAAAGAAAACCTATGAGGCCCAACAAGTG TAAGTCAACAACTAAGAAGAGCAAGGTACCTGTTGGTGGTGGTGATGAAGTTGTAGTGCATAAGATTGATGATGATGACC TGAATGCTATCGATTGGCTCATGAAGGATGTGAGCTGTGTGGGAGTCATTCATTCTCTTAGAGAAGCTAATGGGGAGGCT GATGAACTAGCTAAATCAGGCTGCGATCGAGCTAATCCTCTGTGTGAGAAACTATTGTGATGTGATACTTATTTTGGGCC CTCTGGTTTCATGTTATTGCTCCCTCATTTCTGCTTCTGGCTGTCATGAAAAGTGGTGCTCTAGCAATAGTTCGCGGCAA GCTTCATCCTCATTGTGCACTCGCAAGCCTTGCTGATGTGGAGCCATGTTTATTCCTGTGCTGTTTGATTCACTAATCTG TTATTTCTTTTATTTGCTTTGCTGCTCTTTTTTTTTTTGTTTTTACTTTCTATTCTTCTGTTCTTGGCCCTTGCGTTCCT CTTGTTAGGATCCTTGGCGCTGCCCTGCTTCTTTTTCCTGTATAGCTTGGTGCTTTTGTCTTCTATTTAATTCCAATAAA GTGCTTTTGCTTCCAAAAAAAAAAGATTGATGATGATGACTATCAAACTGAAGAACTTCTTAGTGATGCATGTGATGAAT ACAATGATGATTCTTCTACACAAAGGTTTGAGAGGTTTAAGGAAGAAGATATGATACAAAATCTCATAGACGGAAGGGGT TCTTGGAACTGCTTCGGGATGAAAAACTTAACGTCAATGATTAAAAACAGAACGTTTCATATGTTGGGGATGGAAAATGG AAAAAAAAGTAAACGGACTAAAAACGAAAATAAAATAAGGACGAAAAACATATTTTAGCCAAATCATTTTTACTTATTTG AATTCATATGTCCATATTCTACTAAAAAAAGGAATTTTTATTCGAATAAGTTGACTTGTAAATTGTAATATAAATATTTC TCTCTCCTAATCTACATAGTGCATCTTCATAAAAAAAAAAAAAGAGAAAAAGATGATGCACCGACAGTGTAAAGTTTTTT TACATCGTCAATCAATCATCAGATTTCAAGGATGTGTCACGTCAATTAATGATATTAAATAAAAGGAGAGATTCTCACAT CCTTAAAATCTGATTGGTTGACGGTGTAAAAAAGCTTTACACCGTGCATAGAAATTAAACTCAAAAAAAAAAACTTATTA GTGCATTGAGATTGTTTTTTTTCTGTTACATTTTTTTTGGGCTTAAATGCACTTTTGGACCCTCATGTTTTAACTTTTTG CGATTGTCAACCCTCATATTTTTTTTCTACGAATGGGAACCCTATTCTTTTAAAACGCTACACTGTTTATCCTTCCGTCC AAATCCGTCAAAAACTTGATGGAACACGCTGATATGACCTTCCACGTGGATAAAAGGGGGATTTAAAAAAATGGCTTAAA TGCACTTTTGGACCCTCAAGTTTACATTTTTTGCGATTGTTGACCCTGATCTTATTTTTAGTTTGAATGGAGACCCTAAT CTTTTAAAACATTGCACCGTTTACCCTTCCGTCAGAAGGCCAGGTAAGTGAGTTCCGTCAAGTTTTTGACGGATTTAGAC GAAAGGGTAAACGGTGCAACATTTTGAAAGATTAGGGTCTCTACTCGTAGAAAAATAAGATCAGAGTCAACAATCGCAAA AAATATAAACTTGGGGTCCAAAAGTGCATTTTAGCCCTTTTTTTATCTGATGATTAAGGTGTTTTTAGTTTACTCTTTTG GATTTTAAAACTCCTTTTTAATTTATTTTAATTCCTATACAAGCTCTGGAAAGTTGACACATGTCAAAACTGCCCCTCTA GATTTAGATTTAGATTTTTTTTAAAAGGAGATTTATATATATATATATATATATATATAGATTTAATTGCTAAGAAAAAC TATTGAAAGATAAAAGCTGATTAATGACTAATGAGAGTATCAGACACATGTCTTTTTTTTAAAAGGTACCAGACACCTGT CGCTCCTCAGGATTTGTTGCATAGCAAGTCCAATAAAACCCCTTTTAAAAAAAGTCCAATAAAATTAAGGATAATTATGA GTTAGGCAAATATGAATTTCAATTATTAGTTTTAAAAAAAAAACGAATTGCAATTAATTTTCAAATTGAATACGCGTTTT TTCTTCTTAATGTTGTGATAATAACAACGGTAAAGCCCCTAAAAAAACCAACGGTAAAATATCGATCAACATCTTGAACA AATCTTTTATTTTTAAATGACATCTTGAACAAATCTTTAATGATTTGATTTTGATATCATTAGATATTTTGTTTCTTTAA AAAAATGATATTCGCTTGTCATATTTCAAGTTAAACGATTAGTGAGTGTGCAGATTAAGTCTCAATTTACTCCTTGTGCA AGGATCAAAGTTGCCATTACTGTGTTCCCTTTTCTGATCAAGAAGTGCATAACAATTCATTCTTGAAGAGTAAGATCGAG TCATGTCGATGATGATAGATACTTATTTCACATGGGAACTTCGTCGTTCCCGAATGGATGAAGATGACCGAGTGCTTGTT CGAACTCTGCAGCAAGATTATGTTGCCCTTGGAGATTATTTGTGCATGGAAGTTCGCATTAAACGTGAACTGTACAATAG GCTTTATCCAGAGAGTGAGAGCTCCATTGTGGTATCTTGGGATGAATTACTAAGCGGTGATCTATCAAGCATCGAAAGAA ACTTGTTTGATCATCATATCATTCCCCCTGAGTTCATTCCATCACTGGCGTCAGATGTGGTATCACGTGCAAGCGAATTG GTACAAGATTGTCCCCTGAATTCCAATCATGAAAGGCCACACAGGGTCAAATTTGTTTTGAATATTACTGCTCCTGATGA GTTATTTAAGTTCTGGGAGTCCTGTATGGAAGAGGAAGAAAGTGAAGAGGAAGAAAGTGAAGAACCCCATCACCACAAGA GAGTGAGGGTGGAAGAAGGAGAGGAAGACAGTGAAGAACCCCACCAAAAGAAAGTGAAGGTAGAAGAAGAAGATGCTGAC GCAGAAGGCTGTTGTATTTGTCTAACAGAGTATGAAGATGGTGTGCAGGTTCTACAAATGCCTTGCAAGCATCTGTATCA TGAAGAGTGCATTGTTCAATGGCTAGAAGAAAGTCCAACTTGTCCTTTGTGTCGCTCTACCATGCCCCTCACTGACTGAT TAGAAATTTGTATTTGAATTCAAGTAATTTGTCTTTAAATTCTTAGACTTCAATAGCTGTTAGAGATTGTTAATAATAAT TTCTACTTTTCAATACATTTCAAACTATTTTGGTTTCTGC
CDS sequence (LotjaGi1g1v0261300.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCGATGATGATAGATACTTATTTCACATGGGAACTTCGTCGTTCCCGAATGGATGAAGATGACCGAGTGCTTGTTCG AACTCTGCAGCAAGATTATGTTGCCCTTGGAGATTATTTGTGCATGGAAGTTCGCATTAAACGTGAACTGTACAATAGGC TTTATCCAGAGAGTGAGAGCTCCATTGTGGTATCTTGGGATGAATTACTAAGCGGTGATCTATCAAGCATCGAAAGAAAC TTGTTTGATCATCATATCATTCCCCCTGAGTTCATTCCATCACTGGCGTCAGATGTGGTATCACGTGCAAGCGAATTGGT ACAAGATTGTCCCCTGAATTCCAATCATGAAAGGCCACACAGGGTCAAATTTGTTTTGAATATTACTGCTCCTGATGAGT TATTTAAGTTCTGGGAGTCCTGTATGGAAGAGGAAGAAAGTGAAGAGGAAGAAAGTGAAGAACCCCATCACCACAAGAGA GTGAGGGTGGAAGAAGGAGAGGAAGACAGTGAAGAACCCCACCAAAAGAAAGTGAAGGTAGAAGAAGAAGATGCTGACGC AGAAGGCTGTTGTATTTGTCTAACAGAGTATGAAGATGGTGTGCAGGTTCTACAAATGCCTTGCAAGCATCTGTATCATG AAGAGTGCATTGTTCAATGGCTAGAAGAAAGTCCAACTTGTCCTTTGTGTCGCTCTACCATGCCCCTCACTGACTGA
Protein sequence (LotjaGi1g1v0261300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSMMIDTYFTWELRRSRMDEDDRVLVRTLQQDYVALGDYLCMEVRIKRELYNRLYPESESSIVVSWDELLSGDLSSIERN LFDHHIIPPEFIPSLASDVVSRASELVQDCPLNSNHERPHRVKFVLNITAPDELFKFWESCMEEEESEEEESEEPHHHKR VRVEEGEEDSEEPHQKKVKVEEEDADAEGCCICLTEYEDGVQVLQMPCKHLYHEECIVQWLEESPTCPLCRSTMPLTD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 116 | 236 | 121 | 3.3E-24 | – | |
| PANTHER | 116 | 236 | 121 | 3.3E-24 | – | |
| MobiDBLite | 145 | 181 | 37 | - | – | |
| MobiDBLite | 152 | 181 | 30 | - | – | |
| Gene3D | 166 | 235 | 70 | 8.2E-20 | ||
| SUPERFAMILY | 189 | 235 | 47 | 8.97E-19 | – | |
| CDD | 190 | 231 | 42 | 3.10368E-17 | – | |
| ProSiteProfiles | 190 | 231 | 42 | 12.902 | ||
| Pfam | 190 | 231 | 42 | 7.1E-14 | ||
| SMART | 190 | 230 | 41 | 1.7E-6 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0261300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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