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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0265100 |
| Transcript ID | LotjaGi1g1v0265100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Signal peptidase I family protein; TAIR: AT3G24590.1 plastidic type i signal peptidase 1; Swiss-Prot: sp|Q8H0W1|PLSP1_ARATH Chloroplast processing peptidase; TrEMBL-Plants: tr|I3T671|I3T671_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0265100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:64778533..64782934) extracted from Lotus japonicus Gifu genome v1.2.
GAGATGTAATAAGACATTATATTTTCATCATTTCTTCTTTCTTATCTGTTGGTTACACAGTCACATAGTTGTTTTTCCTG TTATATGTATTATGGTTTGACTGACATAAGCATTTATTGAAGTTAGCATAAAAGTTGAGACAAAATTAGAAAACCGCGTA CGCTGTGGAAACTTAGTCAGTAAGCCAATCACATATATCTCTCTCTTTCTCTTCTCTTGTCCTGTTTCAGACACAAACTG AAATCTCATTTCCTTTTTACGAAGAGTGTGTGCTTTCGTGATGAGTTTCTTGAGACCCTCTGCATTGTACCATTTCCTGA TCACATACTCTTCTCTGCGATGGATGCCATGTCAGAGTTCGGGCTTCCTTCGTTGGCCTGGTCTCGATGGTTTCTTGAGG CTTCTGGTTGTTGGGCTCCTCTGGTCTACCTTCTCTGAGCTTCGTTCCATACCTTCATCTTCCATGTTTCCAACTCTCCG TGTTGCCGATCGAATTATCGTTGAAAAGGTACCTTGATTCACTATCTACCAGTAGGATATATATTTATGTAAATGGCTAA AGCTAGCTGAAAAATATTTGGTTTTTGTTGTTGTTGTTTGTGGTGCCAATTTGGATTTGAGTGCATCTCACTAGCTAAGT GGGTACATGAAAGATGGACCCTTTTTGTCCTTTTTCTCTAATAGGAATATCTTAATTGCTACTTCTTTTTACCCTTACTG TCGCTAGCTTTCATTTAGTGTTACTACTAGATGGAGTATCTATAATCATAATTTCCAATGTCCCTTGTGCTTTGGCTTAA AAGGGGATCCATATTTTTGCTTAAGTATCCAATACATGAAAAATCAACTTTACGGATGTTGTTGATATGAGGAAATGTAT TGGAATGTTAGAATTTCACCCAATCAAATGATTTGAGAGCTAGCAGATCAACGTCAAGATATTTTTTGAGCGAGCATTCT ATTTAATCTTAAAAGTGTTGATTATTTTTCCTTGGTTTGGTTTTTATACTGAAAAGTAAAAGCTAACTATCCATTTATTC AGCATTTATAGTTTGCACAAAGGGCTATGGATAAAGTGGCTGGTCATATCATAGGATTCATAGCTAAACTTCATAGTTAT TTTCCTTTCTTATCTGATTCTAGAATTTTAATCAATTGATGCACAAGATTAAAGGAAAAGAGCTTGAAATTGACTGAGAG TCTCTTTTCATTGAACAAAGCTGTCTTAAGCTACAGATGTTTCTTGTATAGTTTTTAATCTTCCAAAATCGCTACAATTC TTCAAGTATGATGTGTTGTTATGAAAAAGATATACGTATGAGATCGACTATGGCATTGAAGTTTACCATTATCAAGGAAA GTATGCCATCTATCATGCATTTTTGTTCCAAAAGAATGTTATATACACTCAACTTTAGGAGATGGATTAGGACAGACGCT TGAAGCTATTGTTGATTAGTGACTTAAACGGTTTATTCCTTTTAAGGTCATCATAAAAACTGAAATAAATAAGTGATTAC ATAGAGGGTCCAGAAGGAATATTAGAACTGGTTTTGTCAAGGGAAATTTTTGGAAGGCTAGTTCTCATTGTTGTTCTTTC TCATTTCGGTCAATGGCTTTGAAGTTTTAGTGATAAACTGTGCCTTCTGAAACAATAGTTTGGCATTTAAACAACAACTT CTAGTTTGTTACATTATGTTTTACTTACATGCTTATTTGATTCACCGTATATCCATTTGCATTCTGATGAGTAACACTTT CGGAAATAGGATCGATGGATATTTTCTAGTCTTATCTCTATTTTTCTACTTGTTACGTCCTTTTTTAATATTGGAATTGT GATGTTAGTTTCCTTGAAAACTTCCTCAGGCTTCATATTACTTCAGGAGTCCTGCTATCCATGAAATTGTAACGTTTCGG GATCCAACACAGGTATGTTGTGGTGGTATAGAATCTGTAGCCTACTTGCTGATATCCCTAGGGAAACAGCTGATAACCCA GTTCAGTTTTCTATGTAGCTTTCTGGAGACAACCCAGATGTTGTTTTTATTAAGAGAGTTGTCGCAAAAGAAGGTGACAC CGTTGAGGTATAAATAATGTCTTTTGAAATGCCCTTTATGCATTAAGTTAGAGATTTGATAAAGCCAACATTGCTATGTG AACATTTGAAGAGATATAAGGGAATCAAACTATAATTCCTAAATTTACTAGCTTTGAACCAAGTCTATGATTTTAGTTGT TTACTCTTTGATTTAGTTAATTGTATGGTGGACTATTCAGATGCTAATATGTCAAACACTGTTAACTAATTAATTTGATG AGCACAGAGGAACGTAACTGACATCAGGTTTTTCTCACTTCAATGGTTGCAGGTTCATCATGGGAGACTCTACATAAATG GTGTTGCTCAGGAGGAAGATTTCATTGCAGAGCAACCAGCATACACAGTGAAATCAACTGTGAGACCATTGCTAATTGCT CGTCCTTTTTCATTTTACTTTTTCGCCCAATAATTTTGATGTAACCATGGATTACATTCATAAGCATGAAGGAGTGGAAA TTGTCAGGATAAATTGCTTTGCACAATAACCAACTAAGCTCATTTCCCTTTTCACCATTCGAATAAATGAGTTCAACAGT TCTCAGTTCAAAGGTTTTCTGGGACAACTTCAGAGTCCTATCTGATTAATGATGTCCCCTTTATGAAGACTCACCTCTTC TATCCACTCCCTTTTATATTTGTTTTTGGACTGAATTCAAATTACTAATCTTATTTCTGTAAAGATCCCATGTTAGCTGG GTGTATCGGTCGAGTTACTCCTTATAATAAATTAAACTATCTTCCGCCAGTTGAACCAACTTTTAGGGTTGAGTTAGACC AAGACCACTCTCAAGTCTAATATCGCATTAAAGCTTATTGCAGGTTTGATATTGAACAACTCACAAATGTCCACTCAAAA ATCTTTTGTTTTGTGTGTGAAGGGGGTGTGTTGAGTTCTCACATCAACTAGGTATATGGCTAAAATACCTTATAATAAAT TGTAGAATTGTTTCCTGTTAAGCTAACTTTTAGGGTTAATTTTGGCTTATCCATTACAAGTCATATCATTAGTTGTTTAT TCAATATTCATTATGTTCTCTCCTCATGATTACTTCTATGCTTGCAGTATGTGCCCAAAGGCCATGTTTATGTCTTGGGG GATAATCGTAACAATAGCTATGACTCCCATGTATGGTAAGCAACTATTGCAACAAGTTAATTGTACTTCCATTTTTCCTT CTCCATTAATTTTGAACTTTCAGGAGAGGCATGGTTTTCTAAATGTGTTGATGTACAATTCAATTGATCTGTTTCTACAT GAATTTTTTCATAATGATCTCGTAATAAGTTTGAGGAAATATAGATGTTTTCCTTTGTTTAAGTGAAATGAGGAAAATAC AGTTTTATAGAAGCACTTGTACATATAGTGTGAGAAGGATATCTTAATTTCCTCTCTGTTCTGTTTGGATCTTAATTTAA ACTCTTTCTCATACTATCATATTTTTTACCTCTTGTTCCTCTTGATTCTTATATATCTTCTCTTTATGATGAACAGGGGA CCACTTCCTGTTAAAAACATAATTGGAAGATATGTCATGTGCTTTCACAGACCAACAAATTGACACAAATTGAAGAAATA GTTGTTTTCTATGGTCTTACCAATGGGATGACATAATAGTCCATGTGATTTCCATGAAGAGTTCCATCCCGCTGTTCCAT TACTGAAGCATATCATCTGCTAAATCTTTATGGGAATTGGATTCTCTTATGCTCATCTTGAAGCTTCCATCTTTCAAAGT ATGAAACGAACTTGCAGAAGTAATGCCATGCTATTTCTGCTGGGTTCACTGTTATGTCATTTGCTATGTAGTATTCTCAT AGGAATCTGATTTTCTCCATTAGTATTTGTTATATCTTGTTTAAGCCATGGTCAATTAAATGTGTGTGAAAGACAAATAT CTTGTTCATATTTTGAACTTTTTGGACATTTGTAAGTCTATATCCGAAATATTTTGCCTGAGGCTGTCACTCTACATGCA TTCATTTTTCCTTCAATGCTCATTCAAATCATATCATCCCATGCTATTCTCTTGTATCTCTTCAAATGTTTAATCTCCTT TCTCTGGGATTCCAATGATCAATATTTTACTGGAAGTATATCCTTCATGTTAAGTGATTTTACTCGAGCTGGTAGGATTT CTATGAATGACACACACCTTGCAAGTTATTAGAATTGATTTGACGAAATAATAAATTAAATACTTGTAAAAACGATTTTT TCGTACAATTAATCAGTATAAATCGAATAAACTTGGGGCAAAAATATCTATGTTCTATAAATATATGATAGTTTCACTTG TG
CDS sequence (LotjaGi1g1v0265100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGTTTCTTGAGACCCTCTGCATTGTACCATTTCCTGATCACATACTCTTCTCTGCGATGGATGCCATGTCAGAGTTC GGGCTTCCTTCGTTGGCCTGGTCTCGATGGTTTCTTGAGGCTTCTGGTTGTTGGGCTCCTCTGGTCTACCTTCTCTGAGC TTCGTTCCATACCTTCATCTTCCATGTTTCCAACTCTCCGTGTTGCCGATCGAATTATCGTTGAAAAGGCTTCATATTAC TTCAGGAGTCCTGCTATCCATGAAATTGTAACGTTTCGGGATCCAACACAGCTTTCTGGAGACAACCCAGATGTTGTTTT TATTAAGAGAGTTGTCGCAAAAGAAGGTGACACCGTTGAGGTTCATCATGGGAGACTCTACATAAATGGTGTTGCTCAGG AGGAAGATTTCATTGCAGAGCAACCAGCATACACAGTGAAATCAACTTATGTGCCCAAAGGCCATGTTTATGTCTTGGGG GATAATCGTAACAATAGCTATGACTCCCATGTATGGGGACCACTTCCTGTTAAAAACATAATTGGAAGATATGTCATGTG CTTTCACAGACCAACAAATTGA
Protein sequence (LotjaGi1g1v0265100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSFLRPSALYHFLITYSSLRWMPCQSSGFLRWPGLDGFLRLLVVGLLWSTFSELRSIPSSSMFPTLRVADRIIVEKASYY FRSPAIHEIVTFRDPTQLSGDNPDVVFIKRVVAKEGDTVEVHHGRLYINGVAQEEDFIAEQPAYTVKSTYVPKGHVYVLG DNRNNSYDSHVWGPLPVKNIIGRYVMCFHRPTN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 36 | 36 | - | – | |
| PANTHER | 4 | 192 | 189 | 5.9E-92 | – | |
| PANTHER | 4 | 192 | 189 | 5.9E-92 | – | |
| Phobius | 37 | 54 | 18 | - | – | |
| TIGRFAM | 41 | 188 | 148 | 1.2E-36 | ||
| PRINTS | 50 | 66 | 17 | 6.5E-17 | ||
| SUPERFAMILY | 51 | 188 | 138 | 1.19E-44 | ||
| CDD | 53 | 183 | 131 | 1.47246E-24 | – | |
| Phobius | 55 | 193 | 139 | - | – | |
| Pfam | 57 | 130 | 74 | 6.9E-12 | ||
| Gene3D | 59 | 192 | 134 | 6.5E-32 | – | |
| ProSitePatterns | 59 | 66 | 8 | - | ||
| PRINTS | 107 | 119 | 13 | 6.5E-17 | ||
| PRINTS | 151 | 170 | 20 | 6.5E-17 | ||
| ProSitePatterns | 156 | 169 | 14 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Proteolysis | The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds. | ||
| Molecular function | Serine-type peptidase activity | Catalysis of the hydrolysis of peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine). | ||
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
Expression pattern of LotjaGi1g1v0265100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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