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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0271200 |
| Transcript ID | LotjaGi1g1v0271200.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing family protein; TAIR: AT1G43980.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q9LP03|PPR73_ARATH Pentatricopeptide repeat-containing protein At1g43980, mitochondrial; TrEMBL-Plants: tr|A0A0B2SRT0|A0A0B2SRT0_GLYSO Pentatricopeptide repeat-containing protein, mitochondrial; Found in the gene: LotjaGi1g1v0271200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:66162341..66165117) extracted from Lotus japonicus Gifu genome v1.2.
CCAGTACAAAAGTCGTCGAAGAAACCCTAAAATTAATCAAGGGCCCAGTTGATTTTGAACGGAAATAACTCTCATCATCT TTTTTACACAATACTCTTAGTTGATGAAAATTAGATTATCTAATAGTTTAGATTTGGGTAGTGTAGGGGTAGAGTAAGTT TTGATTCACATTTTTTCTACACTTACACCAAGTAAAAGAAGGGAATAAAAGAGAAAATGAGATATATAATAGAAAAATAA GTGAAAAATAAGAAGAAAACTGAAAAGTGAGTGAAAATGAGATGAAAATGGAAGAGAGTATGAATGAAATCTCTATGAAA AAGGCTTGAGTGACTTTCCCATATTGTCCTCAAGAAAACTTTGCAATCACCATTACTTTTTTTTTTCCTTTTTGGTCAAG GAATCACCATTACCCTTGCATAGTTGCATTGAGCAACCGCAGTAAGCAGTTGAAGCCTTGTTCCGAAGATGTGAAACTAA CTGTCAACAGCAGAGGCAGAGATGGAGATTCTAGGCTGTGCATAAGCCAGTGTTTGATTTTGGAGTGCTATCGTTCACTC TCAACCGTGCTTGTGTCTGCAGCTGTGGGCGCATCATTTGTATGTACACATTTTTGAAGCAAACACAAGGTCCTTACACA TCACTTTCTTATTGTTCTACTCTCCTAGACCACTGTTTATCTCAAAAATCCGTTAACTTTGTCAAAATCGTGCATGCCCA TTTCCTCAAATTGGGTCTCAACACCTACACCTATTTGGGCAATCGCTGTCTCGATCTTTACTCCGATTTGGGCCACATTA ACGATGCCTTGAAGGTGTTTGATGATATTTCTCACAAGAATTCCACTTCCTGGAACATTTGCTTAAAAGGGTTGCTCAAA AGTGGGCAGCTTGGCAATGCCTGCCAACTGTATGATGGAATGCCTGTTAGAGATGTTGTTAGCTGGAACTCCATGATTTC AGGTTATGCTTCTAATGGGTTTTCTAGTGATGCATTGGAGCTGTTTGTTGAAATGCAAGGTGCTGGTATGAGACCGAGTA GTTTCACTTTCTCCATTCTGACGTCGCTGGTGTCGAGTCCCTGTCATGCTAAGCAGGTTCATGGGAGGATAATCAGAAGT GGGATGGATTTGTCTAATGTAGTTCTTGGAAATTCGTTGATAGCAATGTATGGGAAGGTTGGTCTTGTTGATTATTCTTT TAGTGTGATTTTGACCATGAAGAAGATCGATATTATATCTTGGAACTCTTTGATGTGGGCCTGTCATAGAGCCGGGCACC ATGAGCTGGCTCTAGCGCATTTCTATAAGATGCGGGATGCGGAGTTGTTACCTGACCAGTTTACGTGTTCGACTTTGATG AGTGTCTGTTCTAACTTGCGAGATTTGGACAAGGGTAAGCAAGTTTTTGCCTTCTGTTTCAAGGTGGGATTTGTTTATAA TAGCATTGTATCAAGTGCTGCTATTGACCTCTTTTCCAAATGCAACAGATTGGAGGATTCTGTTCGGCTATTTACAGAAC AGGATCGATGGGATACAGCTCTGTGCACTTCCATGATTTCAAGCTATGCTACACATGATTTAGGGGAAGATGCCCTGCAT CTTTTTGTTTTAACCTTGAGGGAGAATATTCGGCCAACGGAATACATGGTTAGCTGTCTTCTGAGTTCTTTTTCCATATT TTTACCAGTAGAAGTGGGTATCCAAATCCATGCTTTGGTTCCGAAATTGGGTTTCGAGTCAGATGCAGTTCTTGCGAGTA CACTTGTTCATATGTATGCTAAATTTGGAATTATTGATGACGCCCTGCATATCTTCAATGAAACGAAAATAAAAGATTTG GTATCATGGAACACTATAATGATGGGATTGGCTTACAATGGCAAAGTCTCTGTGACCCTGGATCTCTTCAAGGAATTGAT TAGAGAAGGTATGGCACCAGATAGAATAACACTTGCTGCAGTCCTACTAGCATGCAACTATGGGAGTTTTGTTGATGAAG GAATAAAAATATTTTTCTCAATGGAGACAGAATTTGGAGTAAAACCAGGGGAAGAACATTATACATATGTTGTGGAGATG TTGAGTAAAGCTGGTATGCTAAAAGAAGCCATTGACATTGTAGAAACAATGCCATATACAATTACCCTTGACATGTGGAG GTTAATTCTTTCTGTTTGTGTAATTCATGGAGACTTGCAAGTTATTGAAACAGTTGCAAAGGAAATAATGGAGAGGGAAC CTCAGGCACCCTTTCCTTACTTGGTGTTGGCTCAGGCATATCAGATGATGGAAAGATGGGAGAGCTTGGTTCGAGTGAGG AAGGATATGGAACAAAAATGTACTAAAGAGTTCATTGGATGCAGTTGGTTTGGAATGAAAAACCATGGGTACACTTTTCA GTCAAATCAGTTACAGCATTATGGTGGCAAGGATCTTTATCTGCTGTTGAATTTACTGGTATGGGAGATGGAGACTGAAG GTTATGTCTAAAAGTTGTATGCTAGCAGCTAGAGAATACATATTTGTTTCTTGCCTGGGATGACACTGAGTAAAAAAATA GAGTTCAGTAAGTTATTATCACAGTGTAAAATTAACTCATCTCACCATTTTGTCTCTAGGGTCTGTTTTTTTATATTAAC TTGACTAGATGTGCCAAAATTGTGAAATATAATGTATGTGAAAGTTTATTATATCCTTATAAAAGTAAAGTAAGTTGTAT GAATTCATCCCTTCAAAAGTGAGGGTAATTTGGCAATATTAATTATTTTGTTTATTT
CDS sequence (LotjaGi1g1v0271200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTACACATTTTTGAAGCAAACACAAGGTCCTTACACATCACTTTCTTATTGTTCTACTCTCCTAGACCACTGTTTATC TCAAAAATCCGTTAACTTTGTCAAAATCGTGCATGCCCATTTCCTCAAATTGGGTCTCAACACCTACACCTATTTGGGCA ATCGCTGTCTCGATCTTTACTCCGATTTGGGCCACATTAACGATGCCTTGAAGGTGTTTGATGATATTTCTCACAAGAAT TCCACTTCCTGGAACATTTGCTTAAAAGGGTTGCTCAAAAGTGGGCAGCTTGGCAATGCCTGCCAACTGTATGATGGAAT GCCTGTTAGAGATGTTGTTAGCTGGAACTCCATGATTTCAGGTTATGCTTCTAATGGGTTTTCTAGTGATGCATTGGAGC TGTTTGTTGAAATGCAAGGTGCTGGTATGAGACCGAGTAGTTTCACTTTCTCCATTCTGACGTCGCTGGTGTCGAGTCCC TGTCATGCTAAGCAGGTTCATGGGAGGATAATCAGAAGTGGGATGGATTTGTCTAATGTAGTTCTTGGAAATTCGTTGAT AGCAATGTATGGGAAGGTTGGTCTTGTTGATTATTCTTTTAGTGTGATTTTGACCATGAAGAAGATCGATATTATATCTT GGAACTCTTTGATGTGGGCCTGTCATAGAGCCGGGCACCATGAGCTGGCTCTAGCGCATTTCTATAAGATGCGGGATGCG GAGTTGTTACCTGACCAGTTTACGTGTTCGACTTTGATGAGTGTCTGTTCTAACTTGCGAGATTTGGACAAGGGTAAGCA AGTTTTTGCCTTCTGTTTCAAGGTGGGATTTGTTTATAATAGCATTGTATCAAGTGCTGCTATTGACCTCTTTTCCAAAT GCAACAGATTGGAGGATTCTGTTCGGCTATTTACAGAACAGGATCGATGGGATACAGCTCTGTGCACTTCCATGATTTCA AGCTATGCTACACATGATTTAGGGGAAGATGCCCTGCATCTTTTTGTTTTAACCTTGAGGGAGAATATTCGGCCAACGGA ATACATGGTTAGCTGTCTTCTGAGTTCTTTTTCCATATTTTTACCAGTAGAAGTGGGTATCCAAATCCATGCTTTGGTTC CGAAATTGGGTTTCGAGTCAGATGCAGTTCTTGCGAGTACACTTGTTCATATGTATGCTAAATTTGGAATTATTGATGAC GCCCTGCATATCTTCAATGAAACGAAAATAAAAGATTTGGTATCATGGAACACTATAATGATGGGATTGGCTTACAATGG CAAAGTCTCTGTGACCCTGGATCTCTTCAAGGAATTGATTAGAGAAGGTATGGCACCAGATAGAATAACACTTGCTGCAG TCCTACTAGCATGCAACTATGGGAGTTTTGTTGATGAAGGAATAAAAATATTTTTCTCAATGGAGACAGAATTTGGAGTA AAACCAGGGGAAGAACATTATACATATGTTGTGGAGATGTTGAGTAAAGCTGGTATGCTAAAAGAAGCCATTGACATTGT AGAAACAATGCCATATACAATTACCCTTGACATGTGGAGGTTAATTCTTTCTGTTTGTGTAATTCATGGAGACTTGCAAG TTATTGAAACAGTTGCAAAGGAAATAATGGAGAGGGAACCTCAGGCACCCTTTCCTTACTTGGTGTTGGCTCAGGCATAT CAGATGATGGAAAGATGGGAGAGCTTGGTTCGAGTGAGGAAGGATATGGAACAAAAATGTACTAAAGAGTTCATTGGATG CAGTTGGTTTGGAATGAAAAACCATGGGTACACTTTTCAGTCAAATCAGTTACAGCATTATGGTGGCAAGGATCTTTATC TGCTGTTGAATTTACTGGTATGGGAGATGGAGACTGAAGGTTATGTCTAA
Protein sequence (LotjaGi1g1v0271200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MYTFLKQTQGPYTSLSYCSTLLDHCLSQKSVNFVKIVHAHFLKLGLNTYTYLGNRCLDLYSDLGHINDALKVFDDISHKN STSWNICLKGLLKSGQLGNACQLYDGMPVRDVVSWNSMISGYASNGFSSDALELFVEMQGAGMRPSSFTFSILTSLVSSP CHAKQVHGRIIRSGMDLSNVVLGNSLIAMYGKVGLVDYSFSVILTMKKIDIISWNSLMWACHRAGHHELALAHFYKMRDA ELLPDQFTCSTLMSVCSNLRDLDKGKQVFAFCFKVGFVYNSIVSSAAIDLFSKCNRLEDSVRLFTEQDRWDTALCTSMIS SYATHDLGEDALHLFVLTLRENIRPTEYMVSCLLSSFSIFLPVEVGIQIHALVPKLGFESDAVLASTLVHMYAKFGIIDD ALHIFNETKIKDLVSWNTIMMGLAYNGKVSVTLDLFKELIREGMAPDRITLAAVLLACNYGSFVDEGIKIFFSMETEFGV KPGEEHYTYVVEMLSKAGMLKEAIDIVETMPYTITLDMWRLILSVCVIHGDLQVIETVAKEIMEREPQAPFPYLVLAQAY QMMERWESLVRVRKDMEQKCTKEFIGCSWFGMKNHGYTFQSNQLQHYGGKDLYLLLNLLVWEMETEGYV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 5 | 161 | 157 | 2.4E-24 | ||
| PANTHER | 18 | 156 | 139 | 1.1E-87 | – | |
| ProSiteProfiles | 49 | 79 | 31 | 5.009 | ||
| ProSiteProfiles | 80 | 110 | 31 | 7.87 | ||
| Pfam | 83 | 110 | 28 | 0.047 | ||
| TIGRFAM | 83 | 112 | 30 | 0.0022 | ||
| Pfam | 111 | 153 | 43 | 6.7E-13 | ||
| ProSiteProfiles | 111 | 145 | 35 | 13.077 | ||
| TIGRFAM | 113 | 146 | 34 | 5.0E-8 | ||
| PANTHER | 159 | 270 | 112 | 1.1E-87 | – | |
| Gene3D | 162 | 270 | 109 | 3.2E-20 | ||
| ProSiteProfiles | 179 | 209 | 31 | 6.215 | ||
| Pfam | 208 | 257 | 50 | 0.0032 | ||
| ProSiteProfiles | 210 | 244 | 35 | 9.909 | ||
| ProSiteProfiles | 245 | 279 | 35 | 7.333 | ||
| Gene3D | 271 | 359 | 89 | 1.8E-7 | ||
| ProSiteProfiles | 280 | 310 | 31 | 5.831 | ||
| PANTHER | 283 | 369 | 87 | 1.1E-87 | – | |
| ProSiteProfiles | 311 | 345 | 35 | 8.385 | ||
| Pfam | 315 | 336 | 22 | 0.31 | ||
| PANTHER | 350 | 576 | 227 | 1.1E-87 | – | |
| Gene3D | 363 | 461 | 99 | 5.5E-15 | ||
| ProSiteProfiles | 381 | 411 | 31 | 7.213 | ||
| ProSiteProfiles | 412 | 446 | 35 | 10.775 | ||
| TIGRFAM | 414 | 447 | 34 | 3.5E-5 | ||
| Pfam | 414 | 443 | 30 | 6.5E-4 | ||
| ProSiteProfiles | 447 | 482 | 36 | 6.138 | ||
| Gene3D | 462 | 605 | 144 | 1.0E-11 | ||
| ProSiteProfiles | 483 | 513 | 31 | 6.555 | ||
| Pfam | 486 | 510 | 25 | 0.43 | ||
| ProSiteProfiles | 549 | 579 | 31 | 5.229 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0271200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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