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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0272600 |
| Transcript ID | LotjaGi1g1v0272600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein family; TAIR: AT3G21470.1 Pentatricopeptide repeat (PPR-like) superfamily protein; Swiss-Prot: sp|Q9LVF9|PP245_ARATH Pentatricopeptide repeat-containing protein At3g21470; TrEMBL-Plants: tr|K7KUN2|K7KUN2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0272600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:66865838..66868603) extracted from Lotus japonicus Gifu genome v1.2.
CTGATGGTGCAAGTCACCAAATTGCGTGGAATCAGAGAGAGTTTGAAGCCACCACATTCACATTGGTGTCGTTGTTCAAT CAATGAGCAAGGATCATCGAGAAATGCACTTGTTGTGTATAAACAGACTCGGCATGAAGGAGCACAACACGACCCCAACG TGGTCCCTCTGTTGCTCAAGGCTTGTGCTTCTCTTTCCTCCGTCAAGGTTTTGCACGCAGAGTCCATCAAGGCCGGTTCA GACAGCGATGTCTTCATCGGAACTGCGTTGGTCACAACGTATGCTAAATGCGGCGTCGTTTGGGATGCCCGCAAGCTGTT CGACGCAATGCCTGAGAGAAATGTCGTGACTTGGAATGCCATGATTAGTGGGTACATGAGAAATGGGGACATGGAATCTG CTTCGCTTGTGTTTGAGGAGATGCCGGGGAAAACTGGGGTGACTTGGAGTCAGATGATTGGTGGGTTTGCTAGGAATGGG GACACTGCCACTGCTAGGAGGTTGTTTGATGAGGCTCCACATGAGTTGAAGGGTGTTGTGACATGGACTGTGATGGTTGA TGGATATGCTAGAAAAGGGGAGATGGAAGCCGCCAGGGAGGTCTTCGAGCTCATGCCTGAAAGGAATTGCTTTGTTTGGT CATCTATGGTTTCTGGGTACTGCAAGAAGGGGAGTGTCGCAGAGGCTGAGACTATTTTTGGACGGATACCGGTCCGGAGT TTGGAGATTTGGAATACCATGATTGCTGGATATGTGCAGAATGGATTTGGGGAGAGAGCATTGCAGGCTTTTGAGGAAAT GAGAGCAGAAGGGTTTGAGCCTGATGAGTTCACTGTTGTTAGTGTTTTATCTGCTTGTGCTCAGTTGGGGCTCCTTGATG CTGGTAAGCAAATCCATCACATGATAGAGCATAAAAGGTTAACGGTGAACCCGTTTGTTTTGAGTGGATTGGTTGACATG TATGCTAAATGTGGGGACTTGGTCAATGCAAGGTTGGTGTTTGAGGGGTTCACTCAGAGGAACATCTGCTGCTGGAATGC TATGATTTCAGGTTTTGCCATCAATGGAAAATGCAGGGAGGTTCTCGAGTTTTTTGGCAGGATGGAGAATTTAAATATAA GGCCTGATGCTATCACCTTTCTCACTGTGCTCTCGGCTTGTGCTCATGGGGGTTTGCTCAGTGAAGCTTTGGAAGTAATA TCCAAAATGGAGGCATATGCAATTGAAATGGGCATCAAGCATTACGGATGCATGGTTGACCTCTTGGGCAGAGCAGGGAG ATTGAAGGAGGCTTATGACTTGATCAAAAGAATGCCAATGGAACCTAATGAAACTGTTTTAGGGGCAATGCTTGGTGCAT GCCGGACTCATTCAGATATGAAAATGGCAGAACAAGTAATTAAGTTAATCGGTACAAACTCTATTACACGTGCTGATTCT CACAATGTGCTTTTGTCAAATATCTATGCAGCTTCTGAAAAATGGGAGAAAGCTGAGAAGATGAGAGGGATCATGGTAGA TGGGGAGTCTGAAAAGATAGCCGGGTGTAGTTCTATCATATTTAGTGATTTTTTTGCGGATTCAAGTATGACTAAAGAAG TGTCACATTGAGATGAATAGACTAAGTGCAATTTAGCAAGGAGAAATACAAAAATAAACACTGCTCGATACACTAAAGAA CCAATACAGGAAAGAAGATGTAATCGCTGAAGGGATTTTGTCTTTACCATAATTGTAATTACCGAGTCCCATGCCAAGAT CCTGCTTCCTCCACCACAGGCTAATATTACAAGGGTTCTTAATTACTGAAGCTATTTGATTTGTGATTCTGATCAACGTG TTGTCTGAGTTTAGAGCAAGTATCCCATTTCAGGCTCTATATGGGCGTGAATCCCCTCTCATTTGTAAGGGAAATTACCT TCCCTTCTATGATCAAAGAGATCCACCGGTTGACTAAGGGTGACACTAAAACCTAATTTGGAGGGGTTACAACCCAGGAA GAAATGTCAGGCTGATAAAAAGAGAAGAGATGTGGAGTTTCAGGTGGGAGATTGGGTTTTTGTAAAGCCTTATAGGTTAT GGTCCTTGGCCAAGAAAACAAAAGATAGCCCCATATTTTTATATGGTCCTTCCAAAATCACAGACCGGAGATGATCACTG GCGTATTGCCTGCAGTTACCAAATCATAGTAGTAGTGGAGTTGATCAAATGGGCTGGCTTCCCATATTGTGAAAACTCCT GGGAATTACTCAGCTATGCAATCCAGTTTTCCTCTTTTTCATTTTGAGGACAAGTTGCATGACTTTTGATATTGATAACA TACCTCTAATTAAAAATATCTATGTTAAGAGGAAGGCCATTGGTCCTAGGGCTGATGAGCCCCAAGTACAGTAAGTTGTG GGATTCAGAGTTAAAGAAATTTGTTAAGTAGGTGGGGAGTTAATTAAGGGGCTGGTTACAAGCTGTATTGGCTTCATATT GCCAAGGAGTAGAGATTTAAGAGATTATAGAAGTTAGTTGTGACTTGTGTAAAAGGAGAAACAGGAACCTCTTTAAAGAT GCATGCTTTCGTCTTATTTCTGAACCAGTTGTATCACTGCCCCATCTTCCCACTGAAGTTTTATAAATGTTGAAAGTCAT ATCTGTTTCAAATCTTCATAACCAGAAATTAGTGGAAAATTTAAATTTTCCATTCAGGCCAATTTTTTCATTCTTCATAT AGTCTAATTTATATATGTAACAAAAAGACTCGGTTTTCATAAGTTA
CDS sequence (LotjaGi1g1v0272600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTGCAAGTCACCAAATTGCGTGGAATCAGAGAGAGTTTGAAGCCACCACATTCACATTGGTGTCGTTGTTCAATCAA TGAGCAAGGATCATCGAGAAATGCACTTGTTGTGTATAAACAGACTCGGCATGAAGGAGCACAACACGACCCCAACGTGG TCCCTCTGTTGCTCAAGGCTTGTGCTTCTCTTTCCTCCGTCAAGGTTTTGCACGCAGAGTCCATCAAGGCCGGTTCAGAC AGCGATGTCTTCATCGGAACTGCGTTGGTCACAACGTATGCTAAATGCGGCGTCGTTTGGGATGCCCGCAAGCTGTTCGA CGCAATGCCTGAGAGAAATGTCGTGACTTGGAATGCCATGATTAGTGGGTACATGAGAAATGGGGACATGGAATCTGCTT CGCTTGTGTTTGAGGAGATGCCGGGGAAAACTGGGGTGACTTGGAGTCAGATGATTGGTGGGTTTGCTAGGAATGGGGAC ACTGCCACTGCTAGGAGGTTGTTTGATGAGGCTCCACATGAGTTGAAGGGTGTTGTGACATGGACTGTGATGGTTGATGG ATATGCTAGAAAAGGGGAGATGGAAGCCGCCAGGGAGGTCTTCGAGCTCATGCCTGAAAGGAATTGCTTTGTTTGGTCAT CTATGGTTTCTGGGTACTGCAAGAAGGGGAGTGTCGCAGAGGCTGAGACTATTTTTGGACGGATACCGGTCCGGAGTTTG GAGATTTGGAATACCATGATTGCTGGATATGTGCAGAATGGATTTGGGGAGAGAGCATTGCAGGCTTTTGAGGAAATGAG AGCAGAAGGGTTTGAGCCTGATGAGTTCACTGTTGTTAGTGTTTTATCTGCTTGTGCTCAGTTGGGGCTCCTTGATGCTG GTAAGCAAATCCATCACATGATAGAGCATAAAAGGTTAACGGTGAACCCGTTTGTTTTGAGTGGATTGGTTGACATGTAT GCTAAATGTGGGGACTTGGTCAATGCAAGGTTGGTGTTTGAGGGGTTCACTCAGAGGAACATCTGCTGCTGGAATGCTAT GATTTCAGGTTTTGCCATCAATGGAAAATGCAGGGAGGTTCTCGAGTTTTTTGGCAGGATGGAGAATTTAAATATAAGGC CTGATGCTATCACCTTTCTCACTGTGCTCTCGGCTTGTGCTCATGGGGGTTTGCTCAGTGAAGCTTTGGAAGTAATATCC AAAATGGAGGCATATGCAATTGAAATGGGCATCAAGCATTACGGATGCATGGTTGACCTCTTGGGCAGAGCAGGGAGATT GAAGGAGGCTTATGACTTGATCAAAAGAATGCCAATGGAACCTAATGAAACTGTTTTAGGGGCAATGCTTGGTGCATGCC GGACTCATTCAGATATGAAAATGGCAGAACAAGTAATTAAGTTAATCGGTACAAACTCTATTACACGTGCTGATTCTCAC AATGTGCTTTTGTCAAATATCTATGCAGCTTCTGAAAAATGGGAGAAAGCTGAGAAGATGAGAGGGATCATGGTAGATGG GGAGTCTGAAAAGATAGCCGGGTGTAGTTCTATCATATTTAGTGATTTTTTTGCGGATTCAAGTATGACTAAAGAAGTGT CACATTGA
Protein sequence (LotjaGi1g1v0272600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVQVTKLRGIRESLKPPHSHWCRCSINEQGSSRNALVVYKQTRHEGAQHDPNVVPLLLKACASLSSVKVLHAESIKAGSD SDVFIGTALVTTYAKCGVVWDARKLFDAMPERNVVTWNAMISGYMRNGDMESASLVFEEMPGKTGVTWSQMIGGFARNGD TATARRLFDEAPHELKGVVTWTVMVDGYARKGEMEAAREVFELMPERNCFVWSSMVSGYCKKGSVAEAETIFGRIPVRSL EIWNTMIAGYVQNGFGERALQAFEEMRAEGFEPDEFTVVSVLSACAQLGLLDAGKQIHHMIEHKRLTVNPFVLSGLVDMY AKCGDLVNARLVFEGFTQRNICCWNAMISGFAINGKCREVLEFFGRMENLNIRPDAITFLTVLSACAHGGLLSEALEVIS KMEAYAIEMGIKHYGCMVDLLGRAGRLKEAYDLIKRMPMEPNETVLGAMLGACRTHSDMKMAEQVIKLIGTNSITRADSH NVLLSNIYAASEKWEKAEKMRGIMVDGESEKIAGCSSIIFSDFFADSSMTKEVSH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 25 | 177 | 153 | 6.2E-29 | ||
| PANTHER | 35 | 152 | 118 | 3.4E-107 | – | |
| SUPERFAMILY | 74 | 231 | 158 | 8.72E-6 | ||
| ProSiteProfiles | 82 | 112 | 31 | 7.465 | ||
| Pfam | 112 | 141 | 30 | 5.8E-9 | ||
| ProSiteProfiles | 113 | 143 | 31 | 11.093 | ||
| TIGRFAM | 115 | 140 | 26 | 3.9E-7 | ||
| ProSiteProfiles | 144 | 174 | 31 | 8.122 | ||
| Pfam | 146 | 170 | 25 | 0.0015 | ||
| TIGRFAM | 146 | 170 | 25 | 7.7E-4 | ||
| ProSiteProfiles | 177 | 211 | 35 | 11.367 | ||
| TIGRFAM | 179 | 209 | 31 | 2.8E-8 | ||
| Pfam | 179 | 209 | 31 | 2.3E-8 | ||
| Gene3D | 189 | 296 | 108 | 3.5E-27 | ||
| PANTHER | 211 | 301 | 91 | 3.4E-107 | – | |
| Pfam | 211 | 235 | 25 | 5.4E-5 | ||
| TIGRFAM | 211 | 236 | 26 | 1.5E-4 | ||
| ProSiteProfiles | 212 | 238 | 27 | 6.138 | ||
| ProSiteProfiles | 239 | 273 | 35 | 12.255 | ||
| Pfam | 242 | 286 | 45 | 7.5E-11 | ||
| TIGRFAM | 242 | 275 | 34 | 1.6E-9 | ||
| ProSiteProfiles | 274 | 308 | 35 | 7.3 | ||
| PANTHER | 297 | 504 | 208 | 3.4E-107 | – | |
| ProSiteProfiles | 309 | 339 | 31 | 6.358 | ||
| Gene3D | 317 | 520 | 204 | 2.1E-38 | ||
| ProSiteProfiles | 340 | 374 | 35 | 10.863 | ||
| Pfam | 340 | 387 | 48 | 7.6E-10 | ||
| TIGRFAM | 343 | 376 | 34 | 3.0E-6 | ||
| ProSiteProfiles | 375 | 409 | 35 | 9.208 | ||
| ProSiteProfiles | 410 | 440 | 31 | 7.739 | ||
| TIGRFAM | 414 | 437 | 24 | 0.0019 | ||
| Pfam | 414 | 438 | 25 | 0.0017 | ||
| ProSiteProfiles | 442 | 476 | 35 | 5.196 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0272600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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