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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0275500 |
| Transcript ID | LotjaGi1g1v0275500.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Protein CWC15 like; TAIR: AT3G13200.1 Cwf15 / Cwc15 cell cycle control family protein; Swiss-Prot: sp|Q6NUB2|CW15A_XENLA Protein CWC15 homolog A; TrEMBL-Plants: tr|I3SEE4|I3SEE4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0275500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:67432927..67440256) extracted from Lotus japonicus Gifu genome v1.2.
TGTGAATCAATTTTTGAAAAATTAACTCTTTCGGTTTGCTCCATGAGCACAGGTCCAGATATTCTGATTCCAACTCGCAC AAACCCTATCTAATAGCTAATACCTTGCCATCATCCTCCTTTTCTTCCCCTCAATTCAGAGTTTATTTTTCTGTGAATAT TCTGATTCGATTTCTCTTCGACCGAAACCTTCCTCCTCCTCCGAAGATGACGACCGCTGCTCGGCCCACATGGGCACCGG CTAAAGGTGGCAACGAACAAGGCGGTACCCGAATTTTCGGTCCCTCTCAGAAATACTCCTCCAGGGACATCGCATCTCAC ACCACTCTCAAGCCAAGGTAACTAACCCCCGAATTTTGCTCTGTCTATAAGGTCAATGTTGCATGTTATTATGTTAGCAT CAAGTTTTGGTGATGCATGTGGTGTGCTTTATCTTCTACCTTGCCAGGAGAGACGGACAGGACACACAGGATGAGTTAAA GAGAAGGAACCTGCGTGATGAACTGGAAGAGCGTGAGCGAAGGCATTTCTCATCAAAAAATAAATCTTATATTGGTTTGT AATGCTTTTCTAAATTTCTGTTTGTGGGGGATTGAATTTTATCATTCCAGTCATGAGTTTTCATTTTCATTGCTACTAAC TATTCTATCTAATCTATGTTCTCACAGATGACAGGGATCATGGAAAGAGTGGCCATCTGTTTTTGGAAGGTATTACATGC ACTAATTAGTATAAACTTACTAACTTAAATATTTTGCACTCCTAATTTGGTAGGCCTTTAACATACACAGGAACAAAGAG AGATGTTGAAGGCCATATTGTTGCACGAAGTGTTGATGCAGATGATTCTGATGTTGAAGTCAAAAGTGATGAAGAGAGGT TGGTAATTTAGCACAAACTTCATGTTATCAGTATGAAATGCTTGTTCAATTTATTGTATTTTTGGTGTCTATAGACACAA CTGAATAAAACTGAACCCAGTTTTTGAGAGTTTATATGCACGTGACAAGTGCACAGGCATGTCTCACACAATAGGGACTT GTAGTAATAGTGTAATACATCCTTATATGTAATACAATTGAAGTTATTGCTTAAACATATGGGTCATTTAATATTTGTAA AACAATCTTGGGTTATTATTTTTTAGACATTTTATAATACATAGACCTTTCAGTATGCATTCATGAGCGCATGTGCAATT GTGCATCAATATGTAGACTGTTTGTATCAGCATAGCCAATCTTTTTTTTAATACTAATGATATATGATATATTTATTACA TATAGACATTTAGCTGTAAGTATGGCACAACTTTTAGCATTTAAGTTATACTGGATGAGCAATCAAATATCAAATATGAT TGAGTTTTGTCAATATTGCCTTTGTTTGCAGTTGATCTTGTTTGTGCTCGCCTATGCTTTTCTTTGTTTCCAAATTCTTT TTGGGACACTTGGGTTGGGTTAAGTTGTGCCTTCCTTTCAACGTTTAAAAGCTACATTTTTTATTATGCAAATGTACTCA TGCTGCATCTATTTAGCTAATACCTTGTTTTGGCATGTGGTGATGCTTTGTCAGCAAATTGGAGGGGGGGGGGGGGTCTG TTTTGACTTCTTCATTGTTATAACTCATGGTGAATTTAGACATTTAAGCTGATATTTTGTTACAAACTAGTGCCTTCACA TTATACCTTGTTCTCTATTTTCTCTGGGTGAATTTAATGATCTTGTTGTGAGTATTTGAAGACAAGTTTCTTGTATCAAT ATTTTTGAAATTTTCTTATTATAAGTATTTGAAGTCAAATTTCTTACATCAACTTTTGGTATCAATCATATGTCTTGCTA ATAGTAGTATATATTAAAAGTCTCATTATCTCTGTCAGTGATGAAGATGATGATGATGATGAGGATGACACTGAAGCTTT GCTTGCTGAGCTTGAACAAATAAAGAAGGAAAGAGCAGAGGAAAAGCTACGGAAGGTAAAATTATTTCTTCTTTTTTTGT CCTTAGCATAATTCAAGTCATGGCATTGAACTTCTAGACGATCTTGGATTGCTCTCTACATTTTATATACTTCAAGTATT TTTTCTACCTCACTTTGGAAGAAGGGTAGCTACTGGCTGAGTGAGGGAGGGTGGGTAGATACATTGGCCTTTCCCCCACC TTTCTGTAATTCTGTTAGACGCCAGGATTCCTATTCCCAAGAATTAGTTAGTAGAAAGAAGGAATAGTACTGATAGAGAT TAGAGAATGAATAGCATCATCATCCCCAGGGGTTTTCCCTTATAACAAAAATAGAGTCTGTTATTCATTTTCTTATATCG GCTCCCAAACTGATATATAGTGATAGAAACCTGATTTATATTGATAGAAACCCTAATTCCCAATTGGAAACTAGGGAGAG ATACAATAGAAAGGGATACCAAACACCCTTTCCAAGCCTAAAGAGAGAACCACTTCTCTCTAACCCAATTCCTAAACTGA ATAACAAGATAACCTAATGTTCTCTAATCACGCTTATTTATAAAAAACATGCCTCTTAACCCTATAACTAACTAACAAAC TACTGACCCCACTTAACTACTAACAAGCTAACCCCAGTTACCTATCAATACTCCCCCCCTGAAAATTCACCTTGTCCTCA AGGTGAAGGCCTGAATACAAGCTACAACAGTGAACACTCCAAAATACAGCTATGCCCAAGATCAAGCTGTGGATATTAAC TTCCCTTCCAACAGCCATGCCAATGATACAAAAGTGACAATCCGAGCTTACTCCTGGATCCCATTGCACGAACTGCAAAG AATACACCCTGCCTGAAGTGTTGAGCCGGTTCATCAAATAATTGGCACAGTTCATGGTGCTGTCCTGCACCTATTGGAAT AGCAAGCAAGAAAAATCTGAAAGTGCAAACCCCTCCAAGCTAAAATGTCCCCAATCACCATGATACCCAATGTCTGCCAC AACCTCTTGAGGACTTGGTGAAAGTAAAAGTCTCCCTCCAACCTGAATATAAGGATCTAATGCATTCCAAATCAACAAAA GGCTTCTGGTGTGACCAAGGTTGGCCCAATCTATTAGTTTGACTCCACTATTCTGTTGTAAGGCCCAATTCCCCCTTTTA GTGACCACTCACGCATGGTTACAGTGATCAGTTTAGCATGTCTCTTATCTTCCACTCTCCCTTTGTTCACCACACAAATA GTTGATTTCGATGAATTTAGTGGCAGAAACTGTACCTGCATGCTTGCTGCCTTCATCTCCTTCGCTTGTGGAATTGCTCT CGTCGACACCTCTCTTGCCGTTTGCGAAATCGCGAACTTTGCAGGAGTACTGTGCTCTGACGGATCCAATGATGGAGGCA GATCTTCCTTGCGACATTGGAGAAGATTCATCTTCAATATGTCATCTCTCTTCCCTGTTGGTGCACGACTTGTGATGATC AGCTCCGCCGACGTCGACGCCCACAAAGCCCCAATATTAGGCGGTTTCGCCGGTGGACGATTTACCATCTCCGGCATGCA AACAAGCGTGTTTGGTTTCACCGGCGAACGCTCTGTCTTCTCCGGCCCACAAAGAAATGCGTGTGGTCGCTTCCATGGTG GCTGCATGGTGGTTTCCGTCAACGTGGCCTCCGCAGCAACTCGAAACATTGTGCCCAACACCTCACCATTTTGGACATGC AGGCCACTCTTCATCTCCAATTGCGGCATTCTTACCTCTGCTGCAAGATTGAAGCCCAACCTGATTTTTATTGATAGAAA CCCTAATTCCCAATTGGAAACTAGGGAGAGATACAATAGAAAGGGATACCAAACACCCTTTCCAAGCCTAAAGCCTAAAG AGAGAACCACTTCTCTCTCTAACCCAATTCCTAAACTGAATAACAAGATAACCTAATGTTCTCTAATCACGCTTATTTAT AGAAAACATGCCTCTTAACCCTATAACTAACTAACAAACTACTGACCCCACTTAACTACTAACAAGCTAACCCCAGTTAC CTATCATATAGCTACCCAACTAACTTAACTACTCGTATAGCTTCGAAGCCCCACTCAGTGGGTTGGACCCTAACAAATTC ATTGGGATGTTGATGAACAGGTGGCTGAGCACATAAAATAATACTCCTTATGTTTAGCCGCTTACCTTTTGCTAATTTGA TCTGATGATTTGAATTATAAGTTGTAAACAAATGTAGTTTTTCCTTGTGGGCAAAAAAATTTGTTTCAAAACTTAGAGAG AAAGATAAACTGATCAACTCAATATTATTCTGTAAGACTAGCAAACTCATTAACAAGTATAACAGAATTCTATCTATCTG AAAGTAATTACCAGATTGATACTTGTTACATATAAATATCTCTAACATTCCCCCCTCTAAACTCAGAGTGGTGAAGTAAA TGACACAACCCTGAGTATTTAGAAAGTGCTTTTGCAAAAAACATCTGCTAGCTGTTCATGAGCTGGAACATGAGTGACTG CTAGAACCTTCTCTTTTGCAAAGATACACATCCAATTCCATGAACGGTCATGTTATGAAGAGCAGGATTATGACACAAAG CCACTGTGCTTTGACTATCACAATAAACAGTACTAGTGGAGACTGGAGTTTGAAACTTTAAGAGGTGACTGAATGCACAC AAGTTCTGTGGTAGTAAGTTCTAAACATCTATATTGTGCTTCAGCACTAGATCTTTCAACAATATTCTATTTCTTTGAAT ACCATGAAAACAAATTTGGACCAAAATAGATTGTTGACCCTAATGTGGACCTTTGATCGTCTGGATTGGAGCTCAATCTT CATCACAAAATGAATGTAGCTCTAAGGGAACATGCTGACAAGCTGGCCGAATAACAGAATAAGGAGTCCAAAGTCAATAG AGCCTTTCGAGTATCTCAAAATTCATTTGACTATTTCCCAATGATGTTCTAATGGTGAAGGCTTTGACAGACTTTGCTAA CACTAAAACATAATCTTGGTCGAGCGATGGTAGTGTACCGAAGAGCACCCACCCATAGAACGATATAAAGAAGGGTCGTG CATTGGATCACCAATAGATTTAGACAATTTTCATCCTCCTGGCATCATATTCAGATTGCATGGCAGCTTTCTAATGAGGT AATGTCAAGGCCTGTTTGATAGAGGATGGTTCAATAGTAGTAGTAAAGAGCAATGTTGGATGCAATTTAAGTTTGAAGAT ACCAGACTTGGATATAGTTAGCATAGGATGAACTGATTCGGAGATGAGCTGTGTTGGTGAACTTGAAGTTGATGGAGAAG CACAGATTAAAGGAGTGCTAGAATGAGACAAATTATGACTGACGGGTGAAGAAATGTTATTAGGCATGTTAGAACAGTGC GGAACAGAAACTGAATGACTTGATACTGTTAGTGAAGGAGATGGCAAGGAAAAATCAGATGATGTAGAGTTTGGGACAGA CTCAACAGAACCTGAATTAGGTATATTAAGTTATGGAAGAGGCACTTGAATAGGAGAGGTAGAAGTAGATAATTAGACAG ATGCAGCATATTTTGGAAATTCGGACTCATCAAACCTGACATCTGTAGACACTATAATTTTTCCCTCTTGTGTGAGACAT TTGTACCTGTTATGTGATAGAGAATAACCCACACAGATACAAAAGACATCTGTATGATAGTTTGTGTTTACTATAGGGAT GAAGAAGAGGATAGCAAGCACACCCAAAAGAACCTCAAGTATGAGTAATCTGGAAGAAGTCCAAAAATCATTTGAAATGG TATTTTGTTTTGATGAGATGGAGAGAGGAAAGTCTGTTTATGATATGTTTTGCAGTTTGAAAAACATGATCCCAAAAAAA TATATGGCAAGGCCAGCTTGAGATGTAAGTGTAAGCCCCATATCACCTATATGTCTGTTTTCTTTCAATCACACCATCAG AATGGTGTGTATGAGGACATTAAGACGATGAACCATTCCTTGCTCAGCTAGATGTTTTAGTAAATAGCCTGACTCCCCTC TCTTTACTAAATGTTTAGTAAAGGGCTATCAATTTCTTGTTGAGTTGCAACTCTACTAAGGCTTGAAACTGTTTACAGTT CTATGATGTATAGACTGTTTTAGCTTCTAACAGAAGCGAACTGAAAAGAAACTAATTCTAATTTCTAATTAACTCTTGCA AGAGTAAGACTAACAGACTCATTAGCAAGTATTAAACAATTCTAACTAACTAGTAATTACAACACATTGTACTCAATACA TAAGAGTATCTCTAACAAAAAATGAAATGTGATTGTTTTGTGCAGGAACGACTAGAGCAAGAGGAAGAGCTTAAAGTAAA GGAGGCAGAGCTTCTGCGTGGAAACCCATTGCTAAATAATCCAGCATCTTTCAATGTGAAAAGAAGGTTTGAATCCCAAT ATTTCCCCTCTTAAACCAAAATGTCTACTTTTGCTGTTAACCCTATCGGTTTTTTGTCATGATCTCATTTTTTTGGGGTT TTTGTATGCACCTGTTTGGCTTAGGTGGGATGATGATGTCGTGTTTAAGAACCAAGCCCGTGGTGAAGCCAAGGCACCGA AGCGATTCATTAATGATACCATCAGGAATGATTTCCACAGGAAATTCTTGCACAAATACATGAAATGAACCTTGTCTCTG AAACCCCAGTTGAAGAAACTTATTAATTTGCAGTTTGTTTGTATCTATATGTATGATTCACTGTTGATGGATATATCGAT AACATGCAACTTTGTAACATCGATTATGCTTTGCTTGTTAGTGCCACCTGAATTTAAGAATCTAGCTCACCTCTTACCTG TTCTGTTTTTTTTGTGTCTAAACCTCTTCTCTATTCAAACACTATTTTTTGTTAGCTACTAAAGCTGTTTCGCAAATCCT AATCCCTAGTATCAGGTTGGGTAGTGAAGGCTTGTGTAGTTTGTATGGGATCGTTTGTTCAAATTCATTATCACAGTCTT ACAACAAAAACTTGTAAAGCCATTTTCTTATCAGGGCTAGTTTAACATCCTTGCTCTGATAAAGCAATGTCTTTTTAAAG TGAGCAAAAGAAGAAAAAAATAAGGAAAAGGTTGAAGATGCGCTGACACAATTTTTCTGAACAAAACATGAAACAAATTC AAAGTTTTATTGAGTGGAAATTTGAAAAGCTCAACATAAACGATAGCTGAATCTTGGACGGCTCTAACGTTTCCATTCAA AATCCAAGTCCTTTGTCAATGGACATTGGAGAACAAAGCATCAACAATTGAAGGCAATTTGCTTAAACTCAACTGATTGC CTATGCTAACTTTGCAACTGTATTTAAAATTTATAGTTCGAACCCTGCAC
CDS sequence (LotjaGi1g1v0275500.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACGACCGCTGCTCGGCCCACATGGGCACCGGCTAAAGGTGGCAACGAACAAGGCGGTACCCGAATTTTCGGTCCCTC TCAGAAATACTCCTCCAGGGACATCGCATCTCACACCACTCTCAAGCCAAGGAGAGACGGACAGGACACACAGGATGAGT TAAAGAGAAGGAACCTGCGTGATGAACTGGAAGAGCGTGAGCGAAGGCATTTCTCATCAAAAAATAAATCTTATATTGAT GACAGGGATCATGGAAAGAGTGGCCATCTGTTTTTGGAAGGAACAAAGAGAGATGTTGAAGGCCATATTGTTGCACGAAG TGTTGATGCAGATGATTCTGATGTTGAAGTCAAAAGTGATGAAGAGAGTGATGAAGATGATGATGATGATGAGGATGACA CTGAAGCTTTGCTTGCTGAGCTTGAACAAATAAAGAAGGAAAGAGCAGAGGAAAAGCTACGGAAGGAACGACTAGAGCAA GAGGAAGAGCTTAAAGTAAAGGAGGCAGAGCTTCTGCGTGGAAACCCATTGCTAAATAATCCAGCATCTTTCAATGTGAA AAGAAGGTGGGATGATGATGTCGTGTTTAAGAACCAAGCCCGTGGTGAAGCCAAGGCACCGAAGCGATTCATTAATGATA CCATCAGGAATGATTTCCACAGGAAATTCTTGCACAAATACATGAAATGA
Protein sequence (LotjaGi1g1v0275500.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTTAARPTWAPAKGGNEQGGTRIFGPSQKYSSRDIASHTTLKPRRDGQDTQDELKRRNLRDELEERERRHFSSKNKSYID DRDHGKSGHLFLEGTKRDVEGHIVARSVDADDSDVEVKSDEESDEDDDDDEDDTEALLAELEQIKKERAEEKLRKERLEQ EEELKVKEAELLRGNPLLNNPASFNVKRRWDDDVVFKNQARGEAKAPKRFINDTIRNDFHRKFLHKYMK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 93 | 93 | - | – | |
| PANTHER | 1 | 227 | 227 | 7.1E-122 | – | |
| PANTHER | 1 | 227 | 227 | 7.1E-122 | ||
| Pfam | 1 | 229 | 229 | 5.2E-78 | ||
| MobiDBLite | 21 | 37 | 17 | - | – | |
| MobiDBLite | 38 | 93 | 56 | - | – | |
| MobiDBLite | 106 | 133 | 28 | - | – | |
| MobiDBLite | 114 | 133 | 20 | - | – | |
| Coils | 134 | 175 | 42 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | MRNA splicing, via spliceosome | The joining together of exons from one or more primary transcripts of messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced. | ||
| Cellular component | Spliceosomal complex | Any of a series of ribonucleoprotein complexes that contain snRNA(s) and small nuclear ribonucleoproteins (snRNPs), and are formed sequentially during the spliceosomal splicing of one or more substrate RNAs, and which also contain the RNA substrate(s) from the initial target RNAs of splicing, the splicing intermediate RNA(s), to the final RNA products. During cis-splicing, the initial target RNA is a single, contiguous RNA transcript, whether mRNA, snoRNA, etc., and the released products are a spliced RNA and an excised intron, generally as a lariat structure. During trans-splicing, there are two initial substrate RNAs, the spliced leader RNA and a pre-mRNA. |
Expression pattern of LotjaGi1g1v0275500.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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