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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0276600 |
| Transcript ID | LotjaGi1g1v0276600.1 |
| Related isoforms 8 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ubiquitin-conjugating enzyme E2; TAIR: AT4G27960.1 ubiquitin conjugating enzyme 9; Swiss-Prot: sp|P35133|UBC10_ARATH Ubiquitin-conjugating enzyme E2 10; TrEMBL-Plants: tr|A0A078FMX9|A0A078FMX9_BRANA BnaA08g13930D protein; Found in the gene: LotjaGi1g1v0276600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:67754217..67758255) extracted from Lotus japonicus Gifu genome v1.2.
AGCGATATTGGTGGTGGTGGTAATAGATTAGATCATTAGATGAAAATAATAAAATATATAGAAGAGAATTATTATTAGAG GAGAAAGAAAGAGCTGTTCAAAGTAATAAGGAAAAGAAAGGAAAGGAAAAGGGGAGGAAGGAAAAGAAAGGGAGGTGATC AGAGAAAACGAGTGGATTGATAATTGATTCGTCACCTCCATCCACAGACGACAATTATAAAAACTCCTTTCCTTCTCTCT CATTTCTCTCTTATTTCTTCATTCCATTTGATTTGTTTTACCCTCTTCTACAAATACAACAACAAATCCAATAACCCAAA CAAGGATCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTGTTGCTTCTTTTTCTTCTTACCTTAGGAAGAAAGGTATGAACC GTTTTCAGATTCTCTCTATCATCTTGCTTGTTTGTGTTGTTTCTCTCTGATCTGATCTGATCCGATCTGAGCTGATTTTG ATTTTGATTTTGGATTTTGATTAGGTTTTTGGCGATGGCGTCCAAGCGGATCTTGAAGGAACTCAAGGATCTCCAGAAGG ATCCTCCTACCTCATGCAGCGCCGGTAATCTTCCTCACTTTTCTCGTTTTGCAATTTTTCGATTTTCGAATTGGTTCAAT TTTGATGCGTGTGTGTATGTCTGGGCTAATTATTTACGATTCTTGATTTTTTATCGCTAATTTTGGTGTTTGTCTGGGAA ATTATCGTGTTTCTTTTAATTTTTTCGGAATTGGGAATGAATTGACGCCGTTGACTTGATGATGCATGCTGAAAGCAATC AATTGTGCTAATTTCATGACTATGCTGTGCAGGGAGGAAGTTTTGTATGATTTCTTGTTATGTGGATTGTTGAAGAAATT GTTGTGGTTTTGTAGATAAATTGTTGTGATCTTGTCCATAACAGCATTTTTTTATAGGAAAATTACGATTCTGTGCTCCT GCTTTTTCAATTTGAATTATAAACAGATTCTGTGAATGTTTAAGCTTACAATTAGTTTTATTGTTTGTTTTGCATGATTA GTGGTGAATCTATTTTCTGGATCATGTCTCTGTTATGTGCTGATTACTTGTGTGTTTCTTGCCTAATAATTGGGATGAGG AAATCGGAATTGCTGCAGTTGAGGATTGATATGTATTGAAATTGTACTTTTTATCCTGAGTATAGTCCAGCTGTTGTCAA AATTAACAATCTGTATAATCTTTGATTTTGTTTTTAAGTGTGCACTAAGTTATAGCTGTTATTTGATATTTCTCACATGA ATCTCTGCTCCCACTAATAGGAGACTCAATTAGAGGGATGGCTGAAACTATTTAGTCTGCCAAGTTCCTTAAAATCAATT CAAGATTTTCATTTGACCTTGGTCTTCATTGTTTCAAACAAATCAATGGTATAATTCTACTGCATGTTTGAAAAACAATA ACATTTTGTGGCTACTTAGAGAGGTTTTGGAAGAAAAAAAATGATTATTTCCCCTGAATTACCTGATCTGAATCATGTTG TTGGATAAAACTTTGTCAAATTGCTTTGGTTACTTCTCATATATATGTATCAGCTGGCTATATAAGCCCACCCATTCACT GCTTGGTTGCTTTGTCCAGACTAGTTATGCATTGGTAGCATTTAGAAGAACTATGCACTCATCCCCCCATGTTTTGACTG TTTGTTTCAAAACATTGCAGGTCCTGTTGCTGAAGACATGTTTCATTGGCAAGCAACAATTATGGGTCCTCCAGACAGTC CTTATGCTGGAGGTGTTTTCCTAGTAACTATCCATTTCCCTCCGGATTACCCCTTCAAGCCACCCAAGGTTTGCAATCAT TAAAATATCTATTTATTCTGTAATTTTTCTCCGCCGTCTTTAATTCAGTACCAGTTAAGTTATAAATGATGCTGTGATAC ATCTGTTCCCCATTTATTTAGTTTGTTTGGAGAATTTCTGTTCTCAGGGAGCATTTTTTAATACTGAATGCTTTTTCAAA ACACTCATTTCCTAGCATGAAACAAAATTTATGTTTGTTTCCGAAATTTCCTAAAAGAAAACAAATCCATTGCAGATGGC TTATACTGTTGAAAACCTTTTGGATATAGAGGACTTCTTTTCTGTATGCCACCATGAGCACCATATAACTCCTGCTAATC TCTTTTCTATACTCATGGAATGTGAATATCTTGCAGGTTGCATTCCGGACCAAGGTATTTCACCCAAATATCAATAGCAA CGGAAGCATTTGCCTTGACATATTGAAGGAGCAGTGGAGCCCTGCACTAACCATTTCCAAGGTCTGTTTATTGATTATTT TTCTTTATAAGAACAGCTCTTACTCCTGTTATATATTTTTCTTCATCTTCCAAGGACTCTAAACTAAAATATCACAATTT CATCTTCCTCAAATGTTTAGGTGTTGCTCTCAATTTGTTCCTTGCTAACGGACCCAAACCCTGATGATCCCTTGGTCCCT GAAATCGCCCACATGTACAAGACAGACAGGAACAAGTATGAGTCAACTGCCAGGAGCTGGACCCAGAAATATGCCATGGG CTAAGTGACCTGTGATATATGTGAGGGAGAGCCTTTTTACTTCACAGTATTTAGGCCAAACAGCCTTGTATGAATATTTT TCGTCTTCAATCATGAACAGATTAATGAAGGCCCATCCAATTAAAGATGATTGGGGGAAAAACGTTTCTCCTGCTGTTTG TATTGCAAATGTTAATTTTGGAACAGTGAAATGTGGCCAAATTGAATGTTCGCTCTAGTTTTTACCTGTCTTGATACTTG ATAGTGCCATTGCATATTCAATATTTTTTTTCCTGGATTTGATTATTTGTTTTTGTTTTAAACCACGGGAACCCAAAAGA TGAACCCGTGTTAGTCATGCGCTTGGTGGCGGATTTGATCTACTAGTTTTTATTCTCTTCTTTGGAAAAACTACAAACAC AAAAGCTAAGAGATGCCCATAGAATCCCTCAATTACAGGTGGCCCAACTCATGAGGATGGGGGGTCATGAGGAGGGGGTA AGGGGGGAATCCGGAACGCAAACCCCACTATGCTGACCGCTAGCTCCCATCCTGGCCAACCGATCTGCTACCAAATTGAT ATCCTTGCTGATCAGCACCAGCTCTACCATCCAATCACGCACCTGCCACTCCCTTATTTCTGCAATAACTGGCGCGAATC TGCCCACTTCATCATCTGCTATTGCACGAGCCAACTCGGAGCAATCCAACTCAATTACCACACACCTAAACCCCCTGTTC CAGGCTACTTCGCACCCATCCCTTAAAGCCATAGCTTCGACCTTAAAGCCATAGCTTCGACCTCAAACGCACTACCACCC ACAACAAAAAACTGAACCCAAACAGTCACATCCTTGCAGTATCTCTGGCCACCCCGCCACCACCCATTACGTTCCTCACC TCACTATAACTCCCATCCACATTAAGTTTAATTCTTCCATTCTCCGGCGGCCTCCACTTCTCCACCATGAGCCAATATGC ATCAATAGCACCCTGGGAATCCATAACCTCACTATAACTCCCATCCACATTAAGTTTAATTCTTCCATTCTCCGGCGGCC TCCACTTCTCCACCATGCATCAATAGCACCCTGGGAATCCATAAAGATCGCAAATTCATCATGGTCATGCCTAATCGGTC TCCATGCGTCCTGAATACTCCAGGAAGATTCTCAAAAACAATGTTGTTCCTCCATTTCCACACCCCCACAGAGCCGCCAA TGATTTAACACCCCAAGGTCCACGAGCTTGCCTCCCAATCTAATCAGCTACCTCTTGGGTAAAGAAGCCAACCAGTTCAC TGCTCTCATCCTATTCAAGACTTCCCTCGAGTGTGGACAATCACGAAGGCAATGCACGATGGACTCTGTCTCTGTCGAGC AACGAGAACAAGCCACCGAAGGGGACATATGGCACCTATTCCAGTACTCATTTTACCTGAAGAGAATTATGCAAGATGAC CCAGACAAAGTATTTTACCCTTTTTGGAATTAACCTTCA
CDS sequence (LotjaGi1g1v0276600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGTCCAAGCGGATCTTGAAGGAACTCAAGGATCTCCAGAAGGATCCTCCTACCTCATGCAGCGCCGGTCCTGTTGC TGAAGACATGTTTCATTGGCAAGCAACAATTATGGGTCCTCCAGACAGTCCTTATGCTGGAGGTGTTTTCCTAGTAACTA TCCATTTCCCTCCGGATTACCCCTTCAAGCCACCCAAGGTTGCATTCCGGACCAAGGTATTTCACCCAAATATCAATAGC AACGGAAGCATTTGCCTTGACATATTGAAGGAGCAGTGGAGCCCTGCACTAACCATTTCCAAGGTGTTGCTCTCAATTTG TTCCTTGCTAACGGACCCAAACCCTGATGATCCCTTGGTCCCTGAAATCGCCCACATGTACAAGACAGACAGGAACAAGT ATGAGTCAACTGCCAGGAGCTGGACCCAGAAATATGCCATGGGCTAA
Protein sequence (LotjaGi1g1v0276600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINS NGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYESTARSWTQKYAMG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 147 | 147 | 7.7E-100 | – | |
| PANTHER | 1 | 147 | 147 | 7.7E-100 | – | |
| Gene3D | 1 | 148 | 148 | 6.7E-76 | ||
| SUPERFAMILY | 2 | 147 | 146 | 2.95E-67 | ||
| CDD | 3 | 142 | 140 | 4.58309E-76 | ||
| SMART | 4 | 147 | 144 | 1.2E-81 | – | |
| ProSiteProfiles | 4 | 136 | 133 | 49.074 | ||
| Pfam | 5 | 141 | 137 | 2.7E-54 | ||
| ProSitePatterns | 74 | 89 | 16 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0276600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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