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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0276600 |
| Transcript ID | LotjaGi1g1v0276600.2 |
| Related isoforms 8 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ubiquitin-conjugating enzyme E2; TAIR: AT1G64230.4 ubiquitin-conjugating enzyme 28; Swiss-Prot: sp|P35133|UBC10_ARATH Ubiquitin-conjugating enzyme E2 10; TrEMBL-Plants: tr|V7AW87|V7AW87_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0276600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:67755692..67756624) extracted from Lotus japonicus Gifu genome v1.2.
TTGGTAGCATTTAGAAGAACTATGCACTCATCCCCCCATGTTTTGACTGTTTGTTTCAAAACATTGCAGGTCCTGTTGCT GAAGACATGTTTCATTGGCAAGCAACAATTATGGGTCCTCCAGACAGTCCTTATGCTGGAGGTGTTTTCCTAGTAACTAT CCATTTCCCTCCGGATTACCCCTTCAAGCCACCCAAGGTTTGCAATCATTAAAATATCTATTTATTCTGTAATTTTTCTC CGCCGTCTTTAATTCAGTACCAGTTAAGTTATAAATGATGCTGTGATACATCTGTTCCCCATTTATTTAGTTTGTTTGGA GAATTTCTGTTCTCAGGGAGCATTTTTTAATACTGAATGCTTTTTCAAAACACTCATTTCCTAGCATGAAACAAAATTTA TGTTTGTTTCCGAAATTTCCTAAAAGAAAACAAATCCATTGCAGATGGCTTATACTGTTGAAAACCTTTTGGATATAGAG GACTTCTTTTCTGTATGCCACCATGAGCACCATATAACTCCTGCTAATCTCTTTTCTATACTCATGGAATGTGAATATCT TGCAGGTTGCATTCCGGACCAAGGTATTTCACCCAAATATCAATAGCAACGGAAGCATTTGCCTTGACATATTGAAGGAG CAGTGGAGCCCTGCACTAACCATTTCCAAGGTCTGTTTATTGATTATTTTTCTTTATAAGAACAGCTCTTACTCCTGTTA TATATTTTTCTTCATCTTCCAAGGACTCTAAACTAAAATATCACAATTTCATCTTCCTCAAATGTTTAGGTGTTGCTCTC AATTTGTTCCTTGCTAACGGACCCAAACCCTGATGATCCCTTGGTCCCTGAAATCGCCCACATGTACAAGACAGACAGGA ACAAGTATGAGTCAACTGCCAGGAGCTGGACCCAGAAATATGCCATGGGCTAA
CDS sequence (LotjaGi1g1v0276600.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTTCATTGGCAAGCAACAATTATGGGTCCTCCAGACAGTCCTTATGCTGGAGGTGTTTTCCTAGTAACTATCCATTT CCCTCCGGATTACCCCTTCAAGCCACCCAAGGTTGCATTCCGGACCAAGGTATTTCACCCAAATATCAATAGCAACGGAA GCATTTGCCTTGACATATTGAAGGAGCAGTGGAGCCCTGCACTAACCATTTCCAAGGTGTTGCTCTCAATTTGTTCCTTG CTAACGGACCCAAACCCTGATGATCCCTTGGTCCCTGAAATCGCCCACATGTACAAGACAGACAGGAACAAGTATGAGTC AACTGCCAGGAGCTGGACCCAGAAATATGCCATGGGCTAA
Protein sequence (LotjaGi1g1v0276600.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSL LTDPNPDDPLVPEIAHMYKTDRNKYESTARSWTQKYAMG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SMART | 1 | 118 | 118 | 2.4E-57 | – | |
| PANTHER | 1 | 118 | 118 | 2.1E-82 | – | |
| PANTHER | 1 | 118 | 118 | 2.1E-82 | – | |
| ProSiteProfiles | 1 | 107 | 107 | 42.933 | ||
| CDD | 1 | 113 | 113 | 5.41991E-62 | ||
| Pfam | 1 | 112 | 112 | 8.3E-48 | ||
| SUPERFAMILY | 1 | 118 | 118 | 3.07E-56 | ||
| Gene3D | 1 | 119 | 119 | 1.8E-63 | ||
| ProSitePatterns | 45 | 60 | 16 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0276600.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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