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LotjaGi1g1v0276600.5

Overview

Field Value
Gene ID LotjaGi1g1v0276600
Transcript ID LotjaGi1g1v0276600.5
Related isoforms 8
Lotus japonicus genome version Gifu v1.2
Description Ubiquitin-conjugating enzyme E2; TAIR: AT1G64230.4 ubiquitin-conjugating enzyme 28; Swiss-Prot: sp|P35133|UBC10_ARATH Ubiquitin-conjugating enzyme E2 10; TrEMBL-Plants: tr|F4I5B8|F4I5B8_ARATH Ubiquitin-conjugating enzyme E2 28; Found in the gene: LotjaGi1g1v0276600
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:67755692..67757741) extracted from Lotus japonicus Gifu genome v1.2.

ATGGCGTCCAAGCGGATCTTGAAGGAACTCAAGGATCTCCAGAAGGATCCTCCTACCTCATGCAGCGCCGGTAATCTTCC TCACTTTTCTCGTTTTGCAATTTTTCGATTTTCGAATTGGTTCAATTTTGATGCGTGTGTGTATGTCTGGGCTAATTATT TACGATTCTTGATTTTTTATCGCTAATTTTGGTGTTTGTCTGGGAAATTATCGTGTTTCTTTTAATTTTTTCGGAATTGG GAATGAATTGACGCCGTTGACTTGATGATGCATGCTGAAAGCAATCAATTGTGCTAATTTCATGACTATGCTGTGCAGGG AGGAAGTTTTGTATGATTTCTTGTTATGTGGATTGTTGAAGAAATTGTTGTGGTTTTGTAGATAAATTGTTGTGATCTTG TCCATAACAGCATTTTTTTATAGGAAAATTACGATTCTGTGCTCCTGCTTTTTCAATTTGAATTATAAACAGATTCTGTG AATGTTTAAGCTTACAATTAGTTTTATTGTTTGTTTTGCATGATTAGTGGTGAATCTATTTTCTGGATCATGTCTCTGTT ATGTGCTGATTACTTGTGTGTTTCTTGCCTAATAATTGGGATGAGGAAATCGGAATTGCTGCAGTTGAGGATTGATATGT ATTGAAATTGTACTTTTTATCCTGAGTATAGTCCAGCTGTTGTCAAAATTAACAATCTGTATAATCTTTGATTTTGTTTT TAAGTGTGCACTAAGTTATAGCTGTTATTTGATATTTCTCACATGAATCTCTGCTCCCACTAATAGGAGACTCAATTAGA GGGATGGCTGAAACTATTTAGTCTGCCAAGTTCCTTAAAATCAATTCAAGATTTTCATTTGACCTTGGTCTTCATTGTTT CAAACAAATCAATGGTATAATTCTACTGCATGTTTGAAAAACAATAACATTTTGTGGCTACTTAGAGAGGTTTTGGAAGA AAAAAAATGATTATTTCCCCTGAATTACCTGATCTGAATCATGTTGTTGGATAAAACTTTGTCAAATTGCTTTGGTTACT TCTCATATATATGTATCAGCTGGCTATATAAGCCCACCCATTCACTGCTTGGTTGCTTTGTCCAGACTAGTTATGCATTG GTAGCATTTAGAAGAACTATGCACTCATCCCCCCATGTTTTGACTGTTTGTTTCAAAACATTGCAGGTCCTGTTGCTGAA GACATGTTTCATTGGCAAGCAACAATTATGGGTCCTCCAGACAGTCCTTATGCTGGAGGTGTTTTCCTAGTAACTATCCA TTTCCCTCCGGATTACCCCTTCAAGCCACCCAAGGTTTGCAATCATTAAAATATCTATTTATTCTGTAATTTTTCTCCGC CGTCTTTAATTCAGTACCAGTTAAGTTATAAATGATGCTGTGATACATCTGTTCCCCATTTATTTAGTTTGTTTGGAGAA TTTCTGTTCTCAGGGAGCATTTTTTAATACTGAATGCTTTTTCAAAACACTCATTTCCTAGCATGAAACAAAATTTATGT TTGTTTCCGAAATTTCCTAAAAGAAAACAAATCCATTGCAGATGGCTTATACTGTTGAAAACCTTTTGGATATAGAGGAC TTCTTTTCTGTATGCCACCATGAGCACCATATAACTCCTGCTAATCTCTTTTCTATACTCATGGAATGTGAATATCTTGC AGGTTGCATTCCGGACCAAGGTATTTCACCCAAATATCAATAGCAACGGAAGCATTTGCCTTGACATATTGAAGGAGCAG TGGAGCCCTGCACTAACCATTTCCAAGGTCTGTTTATTGATTATTTTTCTTTATAAGAACAGCTCTTACTCCTGTTATAT ATTTTTCTTCATCTTCCAAGGACTCTAAACTAAAATATCACAATTTCATCTTCCTCAAATGTTTAGGTGTTGCTCTCAAT TTGTTCCTTGCTAACGGACCCAAACCCTGATGATCCCTTGGTCCCTGAAATCGCCCACATGTACAAGACAGACAGGAACA AGTATGAGTCAACTGCCAGGAGCTGGACCCAGAAATATGCCATGGGCTAA
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0276600.5) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGCAGCGCCGGGAGGAACTGTTATTTGATATTTCTCACATGAATCTCTGTCCTGTTGCTGAAGACATGTTTCATTGGCA AGCAACAATTATGGGTCCTCCAGACAGTCCTTATGCTGGAGGTGTTTTCCTAGTAACTATCCATTTCCCTCCGGATTACC CCTTCAAGCCACCCAAGGTTGCATTCCGGACCAAGGTATTTCACCCAAATATCAATAGCAACGGAAGCATTTGCCTTGAC ATATTGAAGGAGCAGTGGAGCCCTGCACTAACCATTTCCAAGGTGTTGCTCTCAATTTGTTCCTTGCTAACGGACCCAAA CCCTGATGATCCCTTGGTCCCTGAAATCGCCCACATGTACAAGACAGACAGGAACAAGTATGAGTCAACTGCCAGGAGCT GGACCCAGAAATATGCCATGGGCTAA
Download CDS Sequence

Protein sequence (LotjaGi1g1v0276600.5) extracted from Lotus japonicus Gifu v1.2 Proteins.

MQRREELLFDISHMNLCPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLD ILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYESTARSWTQKYAMG
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
SMART
SM00212
1 140 140 2.1E-66 –
Gene3D
G3DSA:3.10.110.10
7 141 135 6.3E-66
IPR016135
SUPERFAMILY
SSF54495
14 140 127 1.54E-58
IPR016135
PANTHER
PTHR24068:SF247
15 140 126 1.4E-86 –
PANTHER
PTHR24068
15 140 126 1.4E-86 –
ProSiteProfiles
PS50127
18 129 112 42.959
IPR000608
CDD
cd00195
18 135 118 7.73633E-65
IPR000608
Pfam
PF00179
18 134 117 5.0E-49
IPR000608
ProSitePatterns
PS00183
67 82 16 -
IPR023313

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0276600.5, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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