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LotjaGi1g1v0279000.1

Overview

Field Value
Gene ID LotjaGi1g1v0279000
Transcript ID LotjaGi1g1v0279000.1
Lotus japonicus genome version Gifu v1.2
Description DNA-3-methyladenine glycosylase; TAIR: AT3G12040.1 DNA-3-methyladenine glycosylase (MAG); Swiss-Prot: sp|Q39147|3MG_ARATH DNA-3-methyladenine glycosylase; TrEMBL-Plants: tr|I1N9A6|I1N9A6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0279000
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:68184114..68186897) extracted from Lotus japonicus Gifu genome v1.2.

TTTGCATTTGCACATGCAACTATGCGGAATGCATTGTCTTTCACACGGACCACACTCACAAAAACCACATTCGAGCGCGA CTCAACTTCCCAATCATCTTTATTTGAATCATTCTGCTTCCGTGGCAGCGCCATGGCGCCAAAGAAGCGGTTCAAGCGAG TCGCAGAACCGCTTCCACCAACCGAACCGGCGGAGAAAACACGGCGTTCCAAATCACTCAAGCTCACCGCTAAACCCCAA CCACCAGTGCCCCGCGACTTCTTCCAAATCGATGCTCTGGACCTCGCTCCTCGTTTGCTCGGAAAGTTTCTCCGCCGCGA CGACGTCGTTCTTCAGATTACCGAGGTACGACATTGAATGTCATGAATCTCAAATTGGAAAATCAAAAGGGGGAAAAATG GACTAGGGTAGAGGAAGAGGGTTACATTGATTAACATTTGAAATTTGTAGTTTTGTTTGGTTTGCATTTGTGATTTACTG AGGAATGAAATGAAATAGAAATACTGATTAACAGGTTGAAGCGTATAGACCTAATGATTCAGCTTGTCATGGTCGATTTG GTGTTACTCCGAGAACTGCTCCTGTTGTAAGATCATGCTCCCTTTTGTTCTCTTCACTCTTTTTGTTGAAGGTATTGATT ATTATGTGAGGATTTATGGAGTGGTGTTGGTGTGTGGTTGTTCATGTTTTGCAGTTTGGGCCGGGTGGACATGCCTATGT TTATCTTTGCTATGGTCTCCACATGATGCTGAATATTGTTGCTGATAAGGGAGGAGCTGGAGCTGCTGTTTTGATTCGTT CTTGTGCTCCGATTAGTGGTAATGCTCATTAGCATAGTCATTCATAGTATACTGCAAATGAACCATTCTTGTAATTGTTG TGTTTTGGTGTTTAGCCCATCTATCGTGCCTTGCTTACCTTCTCTTTTGTAACTTAGTGCTTTTTGGTGTGTTTGAATTA GCTTATTTTACAACACAATCAGATGTTTAGCTAAGTTTCTAAAAATAGCTCATGACCTACCTATAAGCTCTTTTGACTTT TGAGCTCACTTCATTAAGTTTTTCAAATTAGTCTATGAATAAACATGCATTTCATAAGTGTTTATTGATGTAAGCTAATC AAACGCAGTTATAGTCCCTTACCTATTAATTTCAAAATCCACTAGACTGAAAAGCCAGGTGTCCTTTAGGGTTCTTTAGA TGCTTATTGTGCTATAGATTCAGTTTATGGATGAATAGATAAAAGTCATAACTATATCTTCCATTTCTTGTCAATGACTT ATTCTTGAAAGCCAACCTCGTTCTCTAAAGCTCCTTTTATAGTTGTGTCTTCCAATGGGTTAGACTTAGACCCTTTGCTG ATCTGTTGTAGACAACGTTACCTTATATTCACATAGCAACTCCAATAGTTGCACCAAGAATTCCCTGCTCATATTTCTCT TGAAAAGGGAAATAGAAAAGAAAAAAAAATTAAGAGGTTGTTGCTTGAGTAATAATGGTTTTATAGCTTGCAAAATGATA AACCAGTTTGTAAAGCTTAGCTTATTCCGGCTGTGTACAAACTGGAATATTTGAAAACTGTTGCCCTTGAATCCAGAGTG TCATATAGTGGCTTTCCAGTGATGTGTGTGAACAAAATGTATGTTAACTACTACTCTTATGACAAAGCCAAATCAGGAAG CTGGCTGGACTAATTGGAATGTTAGGGCTCTCAGTAGAAGTTCAGCATTGGTGTTACAATAACCTATCATTATTATTTCC CCCTTGGGTCAGTGACAGTTTAATCAAATCTTTAAGTCTCTTTGTTAGCTTTCATGATAAGGAAACCTTGCATAAAATTA TTTATAGAATGGTTTTATTATATCCCATAACATCACAGGCTTGGATGTCATTCAACAGCGCCGAGGCCAGAAAACTGACA AACCTATTCTTCTTACCGGTCCAGGGAAGGTTAGTTTTTTTTTCCTCCCTCCTTTTCATATGTTTTTTATGCTTTTCAGG AAATTTGCATTACCATTTGACTTATCAAATCAAAGTTATCTACATTTTAATGCATTACCAATTTATCATCAACTAGTCAA TATAGGAATTTGTTCTGTTCATAAAATACAGACTAGCTCCAATGACTTGCATCAATCTTCGCAAAATTTTATTGAGAATC TGATAACTTCATTGAAAGCTGGAACTGAACTAATAAGGATCACCTTAGTTTTTTTAGATTAATCTGACTGTTCTCTCAAA TTTTAGGTTGGTCAGGCACTGGGTCTTTCAACGGAATGGTCCAATCATCCTCTTTATACACCTGGTAAGCTTATAAGTTC CAGCTTCCTGAATGTTTGGCAAATGGATATTAATGCTTTAATGGTTTCACAAAAGGGAAATGTGTATCTGATGCAGGTGG TTTGGAACTCTTAGATGGTCCAGAACCAGAGAACATATTGGTCGGTCCACGTGTTGGTATCCAATACGCTTTGCCTGAGC ATGTAAATGCACTGTGGAGATTTGCCATTGCTGATACCCCTTGGATCAGTGCTCCAAGAAACACTCTCAGGCCACCCTTA TAGTGAAGTTGTAGCTTAAGAGACAAATGATAATTGATAATTAACGGATAAGTAAATTTCCAATGTATAGTCCTATGATA ACCACATGGCGTAATACTGCATCAATCCTGCCATTTTGTTAGTGATGCCCTGTATAAAGAAAGTTTCAACTTGATTTTGA CTATATTAAGATTAACCGAGCCTTCAAAAGGAGGGCAAACGTTTAGCCCTAAAGTTTAAGGTGG
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0279000.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGCGGAATGCATTGTCTTTCACACGGACCACACTCACAAAAACCACATTCGAGCGCGACTCAACTTCCCAATCATCTTT ATTTGAATCATTCTGCTTCCGTGGCAGCGCCATGGCGCCAAAGAAGCGGTTCAAGCGAGTCGCAGAACCGCTTCCACCAA CCGAACCGGCGGAGAAAACACGGCGTTCCAAATCACTCAAGCTCACCGCTAAACCCCAACCACCAGTGCCCCGCGACTTC TTCCAAATCGATGCTCTGGACCTCGCTCCTCGTTTGCTCGGAAAGTTTCTCCGCCGCGACGACGTCGTTCTTCAGATTAC CGAGGTTGAAGCGTATAGACCTAATGATTCAGCTTGTCATGGTCGATTTGGTGTTACTCCGAGAACTGCTCCTGTTTTTG GGCCGGGTGGACATGCCTATGTTTATCTTTGCTATGGTCTCCACATGATGCTGAATATTGTTGCTGATAAGGGAGGAGCT GGAGCTGCTGTTTTGATTCGTTCTTGTGCTCCGATTAGTGGCTTGGATGTCATTCAACAGCGCCGAGGCCAGAAAACTGA CAAACCTATTCTTCTTACCGGTCCAGGGAAGGTTGGTCAGGCACTGGGTCTTTCAACGGAATGGTCCAATCATCCTCTTT ATACACCTGGTGGTTTGGAACTCTTAGATGGTCCAGAACCAGAGAACATATTGGTCGGTCCACGTGTTGGTATCCAATAC GCTTTGCCTGAGCATGTAAATGCACTGTGGAGATTTGCCATTGCTGATACCCCTTGGATCAGTGCTCCAAGAAACACTCT CAGGCCACCCTTATAG
Download CDS Sequence

Protein sequence (LotjaGi1g1v0279000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MRNALSFTRTTLTKTTFERDSTSQSSLFESFCFRGSAMAPKKRFKRVAEPLPPTEPAEKTRRSKSLKLTAKPQPPVPRDF FQIDALDLAPRLLGKFLRRDDVVLQITEVEAYRPNDSACHGRFGVTPRTAPVFGPGGHAYVYLCYGLHMMLNIVADKGGA GAAVLIRSCAPISGLDVIQQRRGQKTDKPILLTGPGKVGQALGLSTEWSNHPLYTPGGLELLDGPEPENILVGPRVGIQY ALPEHVNALWRFAIADTPWISAPRNTLRPPL
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
44 73 30 - –
PANTHER
PTHR10429
45 269 225 1.3E-82
IPR003180
Gene3D
G3DSA:3.10.300.10
72 268 197 1.0E-55
IPR036995
SUPERFAMILY
SSF50486
74 267 194 8.63E-56
IPR011034
TIGRFAM
TIGR00567
77 261 185 3.6E-73
IPR003180
Hamap
MF_00527
78 261 184 27.26
IPR003180
Pfam
PF02245
79 258 180 6.2E-51
IPR003180
CDD
cd00540
80 261 182 1.9029E-79
IPR003180

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0003824
Molecular function Catalytic activity Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
Subterm of
GO:0003905
Molecular function Alkylbase DNA N-glycosylase activity Catalysis of the reaction: DNA with alkylated base + H2O = DNA with abasic site + alkylated base. This reaction is the hydrolysis of DNA by cleavage of the N-C1' glycosidic bond between the target damaged DNA base and the deoxyribose sugar to remove an alkylated base, leaving an apyrimidinic or apurinic site.
Subterm of
GO:0006284
Biological process Base-excision repair In base excision repair, an altered base is removed by a DNA glycosylase enzyme, followed by excision of the resulting sugar phosphate. The small gap left in the DNA helix is filled in by the sequential action of DNA polymerase and DNA ligase.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0279000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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