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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0279600 |
| Transcript ID | LotjaGi1g1v0279600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Homeobox associated leucine zipper protein; TAIR: AT5G06710.1 homeobox leucine zipper protein; Swiss-Prot: sp|P46665|HAT14_ARATH Homeobox-leucine zipper protein HAT14; TrEMBL-Plants: tr|I1L2K9|I1L2K9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0279600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:68230913..68233671) extracted from Lotus japonicus Gifu genome v1.2.
AGGATTTGTCGGTCAATCTTTACTCCCTCCACTGAGAGGCAAAGAGCAGAAGAAGAAATAAAAAGAGCATATATAGTTGT AGGTATCAATGTTGTAGGGTGAAAGGGCTTTTGCATTTTTTGCAGCAAATCTGCTCTCTGGTCTGTCCCTTCGTGACTTT CCTTTGGCTCCCCATTAAAAAAAAAAAGACCTACCTACCTACCAATTAGCATCAAACACAGTTTTATATTATTACATAGT CTTTGCTTTCAAACTCTATAGCACTCTACACACACCTTGCTTCGCAATTGGAGCTAGCTTCTCTCATAAAACCTTCATCT TCCTTCCCTTGGAATACAATAATAATTTCATCTTTTCAAGTTCAACGATATGGAGCTTGCTTTGAGCTTGGGCGACGCAC GGAAATCGTTCTCTTTGCTTGAAAATCTCACAAAATCATCCAACAAAGACGCTCTAGGATTCTCCATACCACAAGAAGAA ACTGGAAAATCTTCAGAAGAGAAAAGGGGTTCCTCAGATCCACCCGTTCAGCTAGATCTTCTTCCTTCAACACCGGTTCT TCGACCCCACCCACCTTCTTCACACATTCGAATTCCATGGCTCACCGATGCACGTATACACCCCAACTTTCTCTCCTAGC TCCTCTCTATTCACTATTTTCCAATTATTTCTCATTCGTTAATTTGTGTTTGATTGAGCATCACTTCTCACTTACAAGCT GCAATGTGTAGGTTATGGGATTTTGTTGCTTTAAATTGTGTGCACACGTCTTAATTAGAAGTTTAACTAGAGATTTTGTT ACGATAGTTTTATAAACGAAAGAGAAACTGAGAAACTATCACCTTTAAGCTAATTTTCTATGCAGAGTTATCTTAATTCT AAATTTTAAAATGGTATCAGAATCTATTTTATATATATCTATTTGTTGAAGACTTCCAATATATATGAGTCACTTCACAG TTCACATCACAAATGTCTAATAATCCTATAAATTTCGCGCTACAGATGTTAGAAGTAAAATTCTCATACAATTGATTCTT GAGTAAGAATTAATTTTGGGAAAAATCTGCTTAGCAAATGAAAAACATGCACAAAGTAATGTTTATTCACCATTTAATTA GGCCTAGTTTAGAGCTTATATACACACAAGTTTTATGATTTACATATATACCTTCTATTTATCTAGTTTATACAACTTGT TCATGGCAGTGGGTATTGAACGGGTCACACCGGAAGTACCGGCAAGGGTGTTGAATAATGTGAACCGGTTACCGTTGCTG CCGGCGGTGGAGGTCGACACTGATGACGGTGCTGCGATTTCATCTCCAAACAGTGCGGTTTCATCTTTTCAGATGGATTT TCTTCTCATAAACAGTAATGCAGATGCAGCCATGAACAAAAGGGATTATCATGAGTTTGAGAGTGCAGACAGAGGTAGCG ACGACGATGAAAACGGCTCAACTCGGAAGAAACTCAGACTCACTAAGCAACAATCAGCTTACCTGGAAGAGAGCTTCAAA GAACACACCACTCTCAACCCCGTAATAACTCAGCAATTTTCTCTCTCTTTTCCTAATTTTTTTTTTAATAAAATGCTTGT TGTTTTTATTTCTTATTGATAGGATCTTTTGTTTTTTGTTACTGAAAAATATGCAGAAGCAGAAACTTGCTCTTGCCAAA CAGTTAAATCTACGTCCTCGCCAAGTTGAAGTTTGGTTTCAGAACAGAAGGGCAAGGTATGGAGAATAACACTGTGGTCC TTCACCTTATCTATCTTAAAAATTTAATGCATGTGAACTAATATTAATATAAAATCTTTGTACTATATACATCACACTTA CCTCATTTGGTTATTCATCTCATTTTCATTAAATTTCTCTTCTTATCTGCATTCTAATAAGATGAGATTGGATTTGATGA TTTTCCCTTCAAAACCGATTCAATCTAAACTGCGAACACTCATATTTATTGGGTTTTTAATTTATTGAAAAATAATTGCA GGACAAAGTTGAAGCAGACGGAGGTGGATTGTGAGTACTTAAAGAGATGTTGTGAGACTCTAACAGAAGAGAACAGGAGG TTGCAGAAGGAGCTACAAGAGCTGAGGGCTTTGAAATCTTGTCAACCATTCTACATGCAGCTTCCAGCTACCACCCTCAC CATGTGTCCCTCTTGTGAAAGAGTCGCCACCAACACCACCACCGGAGCCGCCAACAACAACCAAACAACTTCCCCCACCG CCACAGCCAACAACAACAATAACAATAATAACGGTTCTCAAATCCCTGCCGCTTTGTCTCTTGGCAAGCCTAAAATGTCA CCATTTCCAAATGGTCAAGCCTCATGATATGATTGTCCATTTTTTTCGTCTTTTACACGTGCAATCAATGACAAATATAT CAAAGAGAACAAAAGAAGAACACCTTTCACCCCTTATTTTTTCCCCTTTTAGGTGTATAGTTTTCTTTTTCTTAAATTTT GACCAGATCGATTTGTCTTCTTTTATTCGTTTTGTTTTGATTGTTATAGCCTCTCTGTAATTCGTTGGAACAATGATCCT TTTTGTTGTTGAGATCGCTGAGGAAGTACCAATTAAAGATTTTCTCCATGACAAAACGTGAAATGAAACGCTAGCTATAG CTTGTTCTATATATTTTTGAACGTGCTGGGTTATCATTTTGCATACTTTATATATGATTACATTACATCGCTGTGGTTAT AATTTTTCCTTCAAATTGGAATGATATTGTTGGAGCAAA
CDS sequence (LotjaGi1g1v0279600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGCTTGCTTTGAGCTTGGGCGACGCACGGAAATCGTTCTCTTTGCTTGAAAATCTCACAAAATCATCCAACAAAGA CGCTCTAGGATTCTCCATACCACAAGAAGAAACTGGAAAATCTTCAGAAGAGAAAAGGGGTTCCTCAGATCCACCCGTTC AGCTAGATCTTCTTCCTTCAACACCGGTTCTTCGACCCCACCCACCTTCTTCACACATTCGAATTCCATGGCTCACCGAT GCACTGGGTATTGAACGGGTCACACCGGAAGTACCGGCAAGGGTGTTGAATAATGTGAACCGGTTACCGTTGCTGCCGGC GGTGGAGGTCGACACTGATGACGGTGCTGCGATTTCATCTCCAAACAGTGCGGTTTCATCTTTTCAGATGGATTTTCTTC TCATAAACAGTAATGCAGATGCAGCCATGAACAAAAGGGATTATCATGAGTTTGAGAGTGCAGACAGAGGTAGCGACGAC GATGAAAACGGCTCAACTCGGAAGAAACTCAGACTCACTAAGCAACAATCAGCTTACCTGGAAGAGAGCTTCAAAGAACA CACCACTCTCAACCCCAAGCAGAAACTTGCTCTTGCCAAACAGTTAAATCTACGTCCTCGCCAAGTTGAAGTTTGGTTTC AGAACAGAAGGGCAAGGACAAAGTTGAAGCAGACGGAGGTGGATTGTGAGTACTTAAAGAGATGTTGTGAGACTCTAACA GAAGAGAACAGGAGGTTGCAGAAGGAGCTACAAGAGCTGAGGGCTTTGAAATCTTGTCAACCATTCTACATGCAGCTTCC AGCTACCACCCTCACCATGTGTCCCTCTTGTGAAAGAGTCGCCACCAACACCACCACCGGAGCCGCCAACAACAACCAAA CAACTTCCCCCACCGCCACAGCCAACAACAACAATAACAATAATAACGGTTCTCAAATCCCTGCCGCTTTGTCTCTTGGC AAGCCTAAAATGTCACCATTTCCAAATGGTCAAGCCTCATGA
Protein sequence (LotjaGi1g1v0279600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MELALSLGDARKSFSLLENLTKSSNKDALGFSIPQEETGKSSEEKRGSSDPPVQLDLLPSTPVLRPHPPSSHIRIPWLTD ALGIERVTPEVPARVLNNVNRLPLLPAVEVDTDDGAAISSPNSAVSSFQMDFLLINSNADAAMNKRDYHEFESADRGSDD DENGSTRKKLRLTKQQSAYLEESFKEHTTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLT EENRRLQKELQELRALKSCQPFYMQLPATTLTMCPSCERVATNTTTGAANNNQTTSPTATANNNNNNNNGSQIPAALSLG KPKMSPFPNGQAS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 328 | 328 | 1.2E-124 | – | |
| PANTHER | 1 | 328 | 328 | 1.2E-124 | – | |
| MobiDBLite | 26 | 70 | 45 | - | – | |
| Pfam | 98 | 128 | 31 | 9.9E-5 | ||
| MobiDBLite | 150 | 169 | 20 | - | – | |
| MobiDBLite | 150 | 172 | 23 | - | – | |
| SUPERFAMILY | 158 | 224 | 67 | 3.08E-18 | ||
| Gene3D | 159 | 228 | 70 | 5.6E-18 | – | |
| ProSiteProfiles | 163 | 223 | 61 | 17.167 | ||
| SMART | 165 | 227 | 63 | 4.9E-15 | ||
| CDD | 167 | 224 | 58 | 1.15832E-15 | ||
| Pfam | 167 | 221 | 55 | 2.0E-15 | ||
| ProSitePatterns | 198 | 221 | 24 | - | ||
| CDD | 216 | 255 | 40 | 0.00414592 | – | |
| Pfam | 223 | 257 | 35 | 2.5E-10 | ||
| SMART | 223 | 266 | 44 | 1.4E-24 | ||
| Coils | 229 | 256 | 28 | - | – | |
| MobiDBLite | 285 | 333 | 49 | - | – | |
| MobiDBLite | 285 | 315 | 31 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Molecular function | Sequence-specific DNA binding | Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding. |
Expression pattern of LotjaGi1g1v0279600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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