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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0285600 |
| Transcript ID | LotjaGi1g1v0285600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein family; TAIR: AT3G49240.1 Pentatricopeptide repeat (PPR) superfamily protein; Swiss-Prot: sp|Q9M3A8|PP273_ARATH Pentatricopeptide repeat-containing protein At3g49240; TrEMBL-Plants: tr|I1KAS7|I1KAS7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0285600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:69427439..69431115) extracted from Lotus japonicus Gifu genome v1.2.
TTCTTCTTCTCCTTCTAATCCCTAAACCCTCTCTGAACCCTAATCCAATCCCAACACACCACCATGGCTCTCGCCAGAGC CACCTTCTTCACTCACCTGAAACTCGTCTCCATCCGTCACAACCATCTCCGACCACCGTCCTCCTCCCTCGTCCGCCTCC GTCTCCTCTCCTTCGCCTCCCCAGAAGAAGCCGCCGCAGAACGCCGCCGCCGCAAGCGCCAGCTCCGCATCGAGCCTCCT CTCTCCGCCCTCAACCGAAACCAACAACAATCCCAAAATCCCAACCCGAAGCCGCAATCGCCACCGTACTATCTCAACCC TAACAACCCCAAACTCCCTGAACACACCTCCGCGCTCACCGGTAACCGCCTTCACCTCCACAACAAAATCCTCACCCTGA TCCGGGAGAATGATCTCGACGAAGCCGCGTTATACACGCGCCACTCCATATACTCCAATTGCCGCCCCACCATTTTCACC ATCAACGCCGTCCTCGCCGCACTTCTCCGCCAGTCTCGCTACTCTGATCTTCTCTCGCTCCACCGCTTCATCACGCAGGC TGGCGTCGTCCCCAACATCATCACTCATAATCTCATCTTCCAGACTTACCTTGATTGCCGCAAGCCCGACACTGCTATGG AGCATTTCAAGCAGTTCATCAATGACGCCCCTGTCAACCCTTCGCCCACCACCTACCGCATTCTCGTCAAGGGGCTTGTC GATAACAACCGGCTTGAGCGTGCTATGGAACTTAAGGCACAAATGGATGACAGAGGGTTCGCCGCGGACCCTATTGTTTA CCACTATTTGATGCTGGGTCATGCGAGGAATTCCGATGCTGATGGGGTTTTTACCCTTTATGAGGACCTGAAAGGGAAGC TGGGAGGGGTTGTGGATGATGGGGTTGTTTATGGGTGCTTGATGAAGGGGTATTTCCTCAAAGGAATGGAGAGTGAGGCT ATGGACTGTTATGAGGAGGCTATTGGGGGGAAGAAGATGAGTGCTGTTGCTTATAATTCAGTGCTCGATGCTCTTTCCAA GAATGGAAAGTTTGATGAGGCATTGAAGCTGTTTGATAGGATGTTAAGGGAGCATAACCCTCCGAAACGGTTGGCGGTTA ATTTGGGAAGCTTTAATGTCATGGCAGATGGGTATTGTGCTGAAGGAAGGTTCAACGAGGCGATTCAGGTTTTTAGGAGC ATGGGGGAGTATCGGTGCAGCCCGGATACATTGTCGTTTAATAACTTGATTGAGCACTTGTGTGATAATGGGAAGGTTGC GGAGGCTGAGGAGGTTTATGGGGAAATGGAGGGAAAGGGGGTGAACCCTGATGAGTTTACATATGGTTTGTTGATGGATA CTTGTTTTAGAGAGAATAGGCCTGATGATGCAGCTGGGTATTTTAGGAAAATGGTGGAATCCGGGCTGAGACCTAACTTG GCTGTTTACAATAGGTTGGTTGATGGCTTGGTTAAGGTTGGGAAGATCGATGATGCCAAATCGTTCTTTGACCTGATGGT GAAGAAGCTCAAGATGAATGATGCTAGCTATCAGTTCATGATGAAGGTGCTGAGTGAGGCAGGAAGATTGGATGAGGTGC TTCAGATTGTTGACACATTGTTAGATGACAATGGGCTTGATTTTGATGAGGAATTCCAAGAGTTTGTTAAGGGGGAGTTG AGAAAAGAAGGGAGAGAAGAGGACTTGACCAAGCTGATGGAGGAGAAGGAAAGGCTTAAAGCTGAAGCTAAGGCTAAGGA GATTGAGGCAGCTGAAGCTGCTAAAAGAAGTGCTAGAGCTGCAGTAGCTTCTTTACTTCCATCGAAGTTGTTCGGGAATA AGGAAGCGAATCCGGAGTCTGCATTAGGGAGTGGAGTTAATGTACTCAATGGAGATGGCATCGGTACGAATCCATCTGAG ACTGAACTTGCTGAGAATACAACTGAAGCTGAGGGGCCAAACGTGACAGAGCAAGTAAGCGGTAACAGCTTGTAGGTGCA ATCTCGCAGTGATGAGGAGGTATAATAACTTAATGGTGCTTAGAGGAGCAAGTATAATGTTGTGTTTCTTTGTCAAGATA ATTTTGAATCATCAACCTATGATCCCAACATTTCGAAACATTCTACATGTAATTACACTTATTGGATAGGATTATGCAAT CTATGATTTTAGTTTTCCTATTCTGTAGTAACGTATTATTGGAGCAGTGGTATCAAACCTATTGAAACCACCTTTGCTGG AAAATTGTGTGGCCATATTGACACTGGAAAGGCACTAATTGTTGCATTTTTCTCTCTGGCTTTACACTTTCTGAAGCTTC AATCATGATAAAATCAAGTTTTGCACATCTTAAATGAAGATATCAAACGAGATGCAGAATCATAGGTTTGGCTAAAGTTT GAATGATTGGAAGAAATCTTGGCCTACGGCACCGCATAGACCCAATGTTTAAAATTCATCAGCTTCACTTTGGTATGGTT GCAGTTACGTGTTTACACTTTACACACATACAAGCACATAAATATTGACAACTAAGCATTGGAAGGACCAAGACATCTAG CACAAACCTCAGCAAATCTACTTGCTGAGAAAGTAGGCACCACAAGGTGTTGTCATCAAATACAAATAACTCATTAGGAC CTCTTTTAAAAGGGGTGACACAGCTGCATTTGTTGAATTTCAAGGACCACTTCAGCTTAACGAAGGTTGTAGCTGAAGAA AGGTTACTTTATATACACTTCTGGACGTATACAGTTAACCCAATATACTCACAGATCGCACTAACAGACACAATGTTAAA GTTATATATTCATGAAATTTGTTCATTGGTAGGTAAAGCCGTAAAGGCACACCAAGTTCAGATATGAAATTATTATTCAT GATCGATAGGCCATTTTAATGTGGGAGTCATTATTTTGTCACATTTGACTTTTTTTTTATGTGAAGGGAGATAAGTTTAG CGCTTTGTTTGGTATACAGTCTCTTGCTGTGTCAGAATCTATATATTCTTCCTAGACTAGATCTCACTTGAAGCATATCT TTTGGTGTACCATCTTGGTTCCTAAGAATCCCCCATCAACTGCTGAAGAATAAGGTACTGCTCCATACACAAGCTCCTGT TGCACGACAGCAGTGGCAGAGGAGGAAAAACCAAGTAGCCATCTTCTCGGCGACCATCAAAAGTTGTTTCCATTATTTTT TTGTTTCTCATAACATTAGTGGCACATGTGTAGTGATGAGTCCCTCAATGATCTTGGATCGCAGATGCGGAGGCTTCTTA TAGTTAGTTGTAGTAGTTTGTTGATCAGGAAAGTGGAAGATGTAGTTGTGGCCATCTTAGGCTTGGCAACCGGTGAGGGA ACTATCAAACCCCTATGATTTCGAACATGTGATCATTGGACACCTCACTGGTGTGGCGGCGAGTCCTCTAGTGCCTAATA TATATTGAGGTGCCAACACTAGAGGACTCGCCGCCACACCAGGGGAGCCCATGGGCCGACGAATATATATTGAAATTTAA ATATTAGGAGTAATTTACTTGAAGCTTCACAATTTTTTTAGCTTAAGAAAATGTTAACGTTTTTAACTGTTACAAATGCA TGGATCAATCTTTTGTTTTATTTTTCAATTTAGATCCCTCTGTATTTCAATTTCAGAAGAGGTGTTGTTTGATGGGA
CDS sequence (LotjaGi1g1v0285600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTCTCGCCAGAGCCACCTTCTTCACTCACCTGAAACTCGTCTCCATCCGTCACAACCATCTCCGACCACCGTCCTC CTCCCTCGTCCGCCTCCGTCTCCTCTCCTTCGCCTCCCCAGAAGAAGCCGCCGCAGAACGCCGCCGCCGCAAGCGCCAGC TCCGCATCGAGCCTCCTCTCTCCGCCCTCAACCGAAACCAACAACAATCCCAAAATCCCAACCCGAAGCCGCAATCGCCA CCGTACTATCTCAACCCTAACAACCCCAAACTCCCTGAACACACCTCCGCGCTCACCGGTAACCGCCTTCACCTCCACAA CAAAATCCTCACCCTGATCCGGGAGAATGATCTCGACGAAGCCGCGTTATACACGCGCCACTCCATATACTCCAATTGCC GCCCCACCATTTTCACCATCAACGCCGTCCTCGCCGCACTTCTCCGCCAGTCTCGCTACTCTGATCTTCTCTCGCTCCAC CGCTTCATCACGCAGGCTGGCGTCGTCCCCAACATCATCACTCATAATCTCATCTTCCAGACTTACCTTGATTGCCGCAA GCCCGACACTGCTATGGAGCATTTCAAGCAGTTCATCAATGACGCCCCTGTCAACCCTTCGCCCACCACCTACCGCATTC TCGTCAAGGGGCTTGTCGATAACAACCGGCTTGAGCGTGCTATGGAACTTAAGGCACAAATGGATGACAGAGGGTTCGCC GCGGACCCTATTGTTTACCACTATTTGATGCTGGGTCATGCGAGGAATTCCGATGCTGATGGGGTTTTTACCCTTTATGA GGACCTGAAAGGGAAGCTGGGAGGGGTTGTGGATGATGGGGTTGTTTATGGGTGCTTGATGAAGGGGTATTTCCTCAAAG GAATGGAGAGTGAGGCTATGGACTGTTATGAGGAGGCTATTGGGGGGAAGAAGATGAGTGCTGTTGCTTATAATTCAGTG CTCGATGCTCTTTCCAAGAATGGAAAGTTTGATGAGGCATTGAAGCTGTTTGATAGGATGTTAAGGGAGCATAACCCTCC GAAACGGTTGGCGGTTAATTTGGGAAGCTTTAATGTCATGGCAGATGGGTATTGTGCTGAAGGAAGGTTCAACGAGGCGA TTCAGGTTTTTAGGAGCATGGGGGAGTATCGGTGCAGCCCGGATACATTGTCGTTTAATAACTTGATTGAGCACTTGTGT GATAATGGGAAGGTTGCGGAGGCTGAGGAGGTTTATGGGGAAATGGAGGGAAAGGGGGTGAACCCTGATGAGTTTACATA TGGTTTGTTGATGGATACTTGTTTTAGAGAGAATAGGCCTGATGATGCAGCTGGGTATTTTAGGAAAATGGTGGAATCCG GGCTGAGACCTAACTTGGCTGTTTACAATAGGTTGGTTGATGGCTTGGTTAAGGTTGGGAAGATCGATGATGCCAAATCG TTCTTTGACCTGATGGTGAAGAAGCTCAAGATGAATGATGCTAGCTATCAGTTCATGATGAAGGTGCTGAGTGAGGCAGG AAGATTGGATGAGGTGCTTCAGATTGTTGACACATTGTTAGATGACAATGGGCTTGATTTTGATGAGGAATTCCAAGAGT TTGTTAAGGGGGAGTTGAGAAAAGAAGGGAGAGAAGAGGACTTGACCAAGCTGATGGAGGAGAAGGAAAGGCTTAAAGCT GAAGCTAAGGCTAAGGAGATTGAGGCAGCTGAAGCTGCTAAAAGAAGTGCTAGAGCTGCAGTAGCTTCTTTACTTCCATC GAAGTTGTTCGGGAATAAGGAAGCGAATCCGGAGTCTGCATTAGGGAGTGGAGTTAATGTACTCAATGGAGATGGCATCG GTACGAATCCATCTGAGACTGAACTTGCTGAGAATACAACTGAAGCTGAGGGGCCAAACGTGACAGAGCAAGTAAGCGGT AACAGCTTGTAG
Protein sequence (LotjaGi1g1v0285600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MALARATFFTHLKLVSIRHNHLRPPSSSLVRLRLLSFASPEEAAAERRRRKRQLRIEPPLSALNRNQQQSQNPNPKPQSP PYYLNPNNPKLPEHTSALTGNRLHLHNKILTLIRENDLDEAALYTRHSIYSNCRPTIFTINAVLAALLRQSRYSDLLSLH RFITQAGVVPNIITHNLIFQTYLDCRKPDTAMEHFKQFINDAPVNPSPTTYRILVKGLVDNNRLERAMELKAQMDDRGFA ADPIVYHYLMLGHARNSDADGVFTLYEDLKGKLGGVVDDGVVYGCLMKGYFLKGMESEAMDCYEEAIGGKKMSAVAYNSV LDALSKNGKFDEALKLFDRMLREHNPPKRLAVNLGSFNVMADGYCAEGRFNEAIQVFRSMGEYRCSPDTLSFNNLIEHLC DNGKVAEAEEVYGEMEGKGVNPDEFTYGLLMDTCFRENRPDDAAGYFRKMVESGLRPNLAVYNRLVDGLVKVGKIDDAKS FFDLMVKKLKMNDASYQFMMKVLSEAGRLDEVLQIVDTLLDDNGLDFDEEFQEFVKGELRKEGREEDLTKLMEEKERLKA EAKAKEIEAAEAAKRSARAAVASLLPSKLFGNKEANPESALGSGVNVLNGDGIGTNPSETELAENTTEAEGPNVTEQVSG NSL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 46 | 96 | 51 | - | – | |
| Gene3D | 102 | 273 | 172 | 4.6E-25 | ||
| PANTHER | 120 | 308 | 189 | 2.2E-77 | – | |
| ProSiteProfiles | 136 | 170 | 35 | 8.079 | ||
| ProSiteProfiles | 171 | 206 | 36 | 6.588 | ||
| ProSiteProfiles | 207 | 241 | 35 | 9.734 | ||
| Pfam | 210 | 239 | 30 | 0.076 | ||
| TIGRFAM | 210 | 242 | 33 | 3.1E-4 | ||
| ProSiteProfiles | 242 | 272 | 31 | 6.478 | ||
| Gene3D | 274 | 350 | 77 | 2.3E-12 | ||
| PANTHER | 275 | 489 | 215 | 2.2E-77 | – | |
| ProSiteProfiles | 279 | 309 | 31 | 6.599 | ||
| Pfam | 281 | 305 | 25 | 0.093 | ||
| SUPERFAMILY | 290 | 499 | 210 | 9.42E-13 | – | |
| ProSiteProfiles | 313 | 347 | 35 | 12.934 | ||
| Pfam | 315 | 343 | 29 | 8.1E-9 | ||
| TIGRFAM | 315 | 344 | 30 | 1.3E-8 | ||
| Gene3D | 351 | 449 | 99 | 1.3E-28 | ||
| ProSiteProfiles | 353 | 387 | 35 | 11.915 | ||
| TIGRFAM | 356 | 389 | 34 | 1.3E-8 | ||
| Pfam | 356 | 385 | 30 | 1.4E-5 | ||
| Pfam | 387 | 434 | 48 | 5.8E-13 | ||
| ProSiteProfiles | 388 | 422 | 35 | 12.386 | ||
| TIGRFAM | 391 | 424 | 34 | 5.8E-7 | ||
| ProSiteProfiles | 423 | 457 | 35 | 11.959 | ||
| TIGRFAM | 425 | 458 | 34 | 5.7E-7 | ||
| Gene3D | 450 | 524 | 75 | 2.1E-13 | ||
| Pfam | 454 | 486 | 33 | 2.2E-5 | ||
| ProSiteProfiles | 458 | 488 | 31 | 9.756 | ||
| TIGRFAM | 461 | 487 | 27 | 2.0E-5 | ||
| ProSiteProfiles | 492 | 522 | 31 | 7.355 | ||
| Coils | 541 | 580 | 40 | - | – | |
| MobiDBLite | 595 | 643 | 49 | - | – | |
| MobiDBLite | 609 | 643 | 35 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0285600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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