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LotjaGi1g1v0286900.2

Overview

Field Value
Gene ID LotjaGi1g1v0286900
Transcript ID LotjaGi1g1v0286900.2
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description F-box protein family; TAIR: AT2G40925.1 F-box and associated interaction domains-containing protein; Swiss-Prot: sp|Q3E7D1|FB131_ARATH F-box protein At2g40925; TrEMBL-Plants: tr|G7LFI2|G7LFI2_MEDTR F-box protein interaction domain protein; Found in the gene: LotjaGi1g1v0286900
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:69694826..69700046) extracted from Lotus japonicus Gifu genome v1.2.

ATCCGGAGATCGAACTGGTTTCCACATCATATCGTGATCTTCTTTCTTCCATTCTTTCCTCCGTTGTTCTCAACCGCGCC ACATCACCGTCTCTGTTTCCGCTATCGTTCTCTTTCTCTCTCCGAGGTGCCAATTTAGGGTTTTTCTTTGAATTTCACAT AAATCAATGTCTTCTTTTTAAGGTGTTCTGTGTCTTGTTTCTTTATCTTACACATGCCTAGCTTGTTTCATATTGTTTCT TTATCTATTCACTGCTATATCAACATATTTGATGTTGCTCTATGTGTGTGTGTGTGTGTGAGTTACTTACTTAATGACTA TTTCTGTCTTCCTGCTCTGCCAGGTTTGGACACTAAGGAAAAACCAATTCTAGTGAAATCAACATGTATTATTATTGTTG ATGGAATTCCAATCGAGACAAGTTAAATCTATGGCAAAGGAGATACCTGATGATATTTCTTTTACTATTTTGTCGAAGCT GCCTCTCAAATCTCTTAACCGATTCACCTGCGTACACAAATCATGGGCTGGTTTACTTCAAAACCCTTATTTCATGACCA TTTTCCGCGCCAATTTCCTATCCAAGCATCACTCTTATTACAATGATACATCTCTTCTCTTACAGCAGACACCGCATCTC ATAGATTATCTCATGGGTTGTGGCAGACCGCCGTATTTGCTTTCAGGTGACAAGTTTCAGAATAGGGTCAAATTAGATTG GCCTCTTCCATTTCAAGTCGATGACAGGTTCATCGTCATTTTGGGATCGGGTATTCATGGCACATTTTGTCTCAACCAAA GCAAGAAGTTTGTATTGTGGAACCCAGCTACTGAGGAATTCAGAATTATTCCTCCCAGCCCTCTTGACTCTCCACCTGAT CTGGGTGTTATGATTACTACTCCTCATGGATTTGGTTATGACCCTGTTAGAGATGACTTTAAGGTGATTCGAGAATTAGT AACTTTTCCAGATTACACTGCCTTTGAAGATGATTGGCCAATTGCCCCAGACCCAAGCATCTTTTGGGAGATATATAGCC TAAGAAGCAACTCTTGGAGGAAACTTGATGCTCATATGCCTATTATTGTTGAGAGACCCGCCAAGTGCACTGACACGTAC GTGAATGGAGTGTGTCATTGGTTGGGTATTGTAGATTTACATGGTGATGAAGAACATTTGGCGTCATTTAACTTGAGCAA TGAGGTTTTCCTTACAACACCCTTACCGTTTGATCTGGGTGATAGATCGCTGCAGAAATGCTTGGTGGTGTTAAATGGGT CCATTGCTGTGATATCAGAATCTGCAGAAACAACTTTTCACATTTCAATTTTGGGTGAACTCGGTGTGAAGGAATCGTGG ACTAAACTTTTCACTATTGGACCTTTGCCTTGGGTTGGGTTTCCTATTGGGGTGGGGAATAAGGGTGATGTATTCTTAAG AAAAGAAGAAAAAGGGGAACTAGCTTTGTTTGATTTAAGTTCCCAGATGCTCGAGGATATTGTCACTAAAGAGCAGTTAG ATAGTCATCGAATAATAATTTATAAGGAAAGCCCTCTTCAGATAGGACAAACAGAATATTGATTGCTTTCACTGACTATA TTTATGATGATGGCTATCAAGATTTATTACCATGTTGAATGTTATGAAGCCATTTGATGGGTACTCAGAGTTAGTTAGTA GATTAGTTAGTCAGTGAGAGAGGAAATATGAATAAGAGTGAGTTAGAGAGTATTAGTCATCTTTTGAGATCATTGTTATG GGAATTGGGAGAGACCAGGTTCTCTCTCTAGTGCTTGTGTTTCTATCATCATTTGTATATAATTAGGCTATTCAGTGAAT TCACTTGCCCTTATCATATCTGCTAAACTGGGCTGCCTGGTGGTCTTGTGATGTCTGGCCCAATTACTTCTTCACTCACA TGATGGAAGATTCACGAGCATGACAAAAGATGACTGAAGATGTCTAGCCCCATGCAGACGCTGGCTGCTCCTCACCGTGG CTGCCAGCTTCACGACAAGATGATGTGCCTTACCAACTACACACGCATCACGGAAGATGACGCGCTCCTCACCGTCGTGA CCAATTCCCCACGATTTGCTCTGTTGAGTAGGTGCGCTCAGTCCCATCAATGCGGAATTGGATTGTCAAGCACTCCTTTA GCCGGGTTAGAACCCTAATTTTACTATTTGTGAGTGAGTTGTTCACTGTTGCTCTCGTAGAATCATTGTATTGTTGCCAT AATTGTGGTAGCCGTAGGCTATCCACTTGGCTCTTGTTGATCCTGAGGTTGATGTCTTCTTTTATTGGCTATTTAATTTA GGGGTCTTACTTTATACCTTAAATCTTCATGTTCATTGTTTGGTTGTGATTGACCATTTAATGTTGGTTAATTCTCCTAA GATGCTCTCTTTGAAAGTATAATGTAGCTGTAAACAGATTCTGTAACAGATTCTTGGTGCTTTCTTGACCCAATGTTGTA ACAGATTCTACTCCGTAATGTTGTAACTTGCTGTTTTTTTTTCTCTCTTATTAGTTTTAGTTTCAGATTTCTGTTCTTAA TTACATGATGTGTTTGAGTATGTTCTTATTCTTAACACTCTTTATTTTCCCATGTGCTTTAGGTATATGTTTTGAATGGA AAGAAAGTATTTACTCAATTGTCATACGTGACAAGGGTTATTTCAAAGTCTTCCCATGAAATGTACTTATCATCACAACA TTGCCAGCTACTTGAGAATCACAGGAATGAAATTTTGGCTGAATGTGATATTTGCATATCAGAGCTTGAGAGTTGAAAGT TCTTTTCTCTGTTGACAGTTTCTGCTACACTTGGGTGTTCTTTTTGCTTTTAGCCTTTGCATTTATGGTATGAATTTTAG CCTCCTATTAGTTGTACTTTTTGTTTTGGCTTGTACAGAATTGAGCTTTTTTACCTTCACTCTTTATTTGCATGAGAGCT TTTGTTGGAGTTTTACACTCCTATAGTTCTATATCTGCAAGTCATAAGGCAAAGTAAATAAACACTACTATCAAGACAAA TGACAATTTCCTTCGGGGTAAAAAATTCACAATGGAAATAATGTTTTATCTGTGAACTTGGTTCTCACTTCTTAAAAGAG AAAAAAAAAAAAAAAAAAACGGAGAGGGGGAAGGGAGAGAGCAAAATAGGAACATGAGAAAAAAGAATGTATCACATCCT TAGTCCCATAGGGAATGAAACAGATGCATTTCCAATCTAAGGTAGAAAACCTTGTCCTAGAAAGCAATCTTAATCTTTTT AGTTAGTTGGCCATAAAGAGACTGTAAACTTTTAGCATATAATTTTTTCATGTATTACTAGCTTATTCTTTTGCTTTCAG ATGTTGGGTGTAAAAAGCAAGGAAGAGAGAAATTTTTAATCTGAATTTCAAAGAGGTAACTTGATAATGAAGTGGAATTA TTTTAATTTGTTTGATAAGCATGGAAGAAACAAATTGTTAATCTGTTTGACTCACTGTTGGTAGTGGAAATGAAGTAACT TGATAATTAGTGACATACTCACTTAGGTTTCTTTGGGTCCAAGACTGCACAAGAACAGAATTTTGAACTCCGTTTTAATG CAAATACTTATTTGGATTTGTCTATCTTTGCCATACTTGTGTAACTTGACGAATTGAATAGTTAACCAAATTTTTTATAT TTTCTTGCTGATATTTTATGACACGGAAGTTTTCCCTGAATGGAATGGTTCTTAGTTTCATTTTCTAATTTTTTAATTAG ATCAAACATTAGTTTTGTCTTTTTCATACTTCACCAAAAAGTCATTGATGTATTGAGTGGATAACTAGATATCATTGTAG AAAAAATTGGAGCTGCTTGAATATTTTCCTTGTGCTTATACTTTCTATAGACTAACTACTGCATTATTTAACAAAATGTT TTGTTTCCTTACTCTTTAATTTTGAGTACCTTATAATTCAATATGTCCTACAGTTTATAATTTTCCATGTGCATGTGTCC CTCATGGTCATAGTGTGTGTCTTACAATTAACAATAATATCTCTATTGGCTTATTGAGGTAGTCATTTTTTGAATTATTA ATAGGTTCAATAGGATGAATCAACAACTGGTGAGCACCAAAGCAGAGTTTCAATTTGGTAAATTGAACCGGTAGTGACTC CTTTCTATGGTTATCCACCTCTATTTTTAAGGCCCAAGTTTCCATGGCAACCAGGAATGCCAGGTAACATGAGTCATTCC TTGATTATTTCAGCTTTCATTGAAAGATTTCTTGCTTGGATTTATTTGTTATTGTGAATAAATCACTCATATTTATTTCA CTTTAACACAAATATCAGATGTGGAGAATTCAATTCAATACTGGTTATGTATGGCTGTGTGTGAGAGAGAGACAGAGTTC AGTGACTGTGTTAAAGAATTAGTTTTGGTCCATTAAATTGTCATGTATATTAGGACTAAGTTTATGATGTGGATGAAATT GAGCAGCAGCTTTTGTGTTCCCAGATTTTATTCTCATCCCTATCCTTTCAGGTTGTGCGTGTGACTAATGATCCTTGTCA TTGATTTCGCAGATGATGAGTATGATTTAGAAAATGCTTTCAAGAGAGCTGTGCCATGGCTTGAAGGTGGCTTTGTCATG AAGGATGAATTAAGTTCAGTCTTCGATGTTTTTAGTTTGTTGCAAGTTAGTTAATATTGTTTTTCTTTTAACTTGCTTAC TTTGAATACTTAAGCATGCATTTTTCTTCATTGCAAGTTGGTTAATAGCTTTCTCTTATTTCTGTTGAATCAATGGATTT TTATATCATTAACTAAAGATATGCTACTTATTTTTACTGCTTGCTGAGTTACTGTGGTGTTTTGGTTGAATGACTTCTGA TAATTATCTTAACTAATTTCTCCGTTTAAGCATACAAGTGGCAGAGTTTCACATAATATGGCTTCATTTGAATGAGCTGA AGTTACCTTTGGACATTCTCTTCAATAATATTGATGACATTCATTGTTTGGTGTTGCTTCCTACTGCAATGTCCTGCTAT GCTTATATTTTTTATGTGTCGACAGTAACACATACCGATGATTATTGTAGTACTTTCTTAGCCGATTGTAACAGACATCT CTATATGTTTTAAATTTGAGTCTTCACTTTGGACATCTCATTTATCCGTGTAACTTATCTCTTTAAAATACATGTTCTCA CTATTTTCCTTGAAGCTTGAC
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0286900.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGAATTCCAATCGAGACAAGTTAAATCTATGGCAAAGGAGATACCTGATGATATTTCTTTTACTATTTTGTCGAAGCT GCCTCTCAAATCTCTTAACCGATTCACCTGCGTACACAAATCATGGGCTGGTTTACTTCAAAACCCTTATTTCATGACCA TTTTCCGCGCCAATTTCCTATCCAAGCATCACTCTTATTACAATGATACATCTCTTCTCTTACAGCAGACACCGCATCTC ATAGATTATCTCATGGGTTGTGGCAGACCGCCGTATTTGCTTTCAGGTGACAAGTTTCAGAATAGGGTCAAATTAGATTG GCCTCTTCCATTTCAAGTCGATGACAGGTTCATCGTCATTTTGGGATCGGGTATTCATGGCACATTTTGTCTCAACCAAA GCAAGAAGTTTGTATTGTGGAACCCAGCTACTGAGGAATTCAGAATTATTCCTCCCAGCCCTCTTGACTCTCCACCTGAT CTGGGTGTTATGATTACTACTCCTCATGGATTTGGTTATGACCCTGTTAGAGATGACTTTAAGGTGATTCGAGAATTAGT AACTTTTCCAGATTACACTGCCTTTGAAGATGATTGGCCAATTGCCCCAGACCCAAGCATCTTTTGGGAGATATATAGCC TAAGAAGCAACTCTTGGAGGAAACTTGATGCTCATATGCCTATTATTGTTGAGAGACCCGCCAAGTGCACTGACACGTAC GTGAATGGAGTGTGTCATTGGTTGGGTATTGTAGATTTACATGGTGATGAAGAACATTTGGCGTCATTTAACTTGAGCAA TGAGGTTTTCCTTACAACACCCTTACCGTTTGATCTGGGTGATAGATCGCTGCAGAAATGCTTGGTGGTGTTAAATGGGT CCATTGCTGTGATATCAGAATCTGCAGAAACAACTTTTCACATTTCAATTTTGGGTGAACTCGGTGTGAAGGAATCGTGG ACTAAACTTTTCACTATTGGACCTTTGCCTTGGGTTGGGTTTCCTATTGGGGTGGGGAATAAGGGTGATGTATTCTTAAG AAAAGAAGAAAAAGGGGAACTAGCTTTGTTTGATTTAAGTTCCCAGATGCTCGAGGATATTGTCACTAAAGAGCAGTTAG ATAGTCATCGAATAATAATTTATAAGGAAAGCCCTCTTCAGATAGGACAAACAGAATATTGA
Download CDS Sequence

Protein sequence (LotjaGi1g1v0286900.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MEFQSRQVKSMAKEIPDDISFTILSKLPLKSLNRFTCVHKSWAGLLQNPYFMTIFRANFLSKHHSYYNDTSLLLQQTPHL IDYLMGCGRPPYLLSGDKFQNRVKLDWPLPFQVDDRFIVILGSGIHGTFCLNQSKKFVLWNPATEEFRIIPPSPLDSPPD LGVMITTPHGFGYDPVRDDFKVIRELVTFPDYTAFEDDWPIAPDPSIFWEIYSLRSNSWRKLDAHMPIIVERPAKCTDTY VNGVCHWLGIVDLHGDEEHLASFNLSNEVFLTTPLPFDLGDRSLQKCLVVLNGSIAVISESAETTFHISILGELGVKESW TKLFTIGPLPWVGFPIGVGNKGDVFLRKEEKGELALFDLSSQMLEDIVTKEQLDSHRIIIYKESPLQIGQTEY
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR31790:SF267
11 352 342 1.7E-31 –
PANTHER
PTHR31790
11 352 342 1.7E-31 –
SUPERFAMILY
SSF81383
13 61 49 6.15E-8
IPR036047
SMART
SM00256
15 55 41 2.4E-4
IPR001810
TIGRFAM
TIGR01640
125 346 222 2.4E-25
IPR017451
Pfam
PF07734
241 358 118 1.0E-5
IPR006527

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0286900.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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