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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0290900 |
| Transcript ID | LotjaGi1g1v0290900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | U-box domain-containing protein; TAIR: AT1G76390.1 ARM repeat superfamily protein; Swiss-Prot: sp|Q9SFX2|PUB43_ARATH U-box domain-containing protein 43; TrEMBL-Plants: tr|A0A0R0JPS9|A0A0R0JPS9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0290900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:70652173..70657685) extracted from Lotus japonicus Gifu genome v1.2.
TTTCTTTCTTTTCCTTTCCTTACATTATTATTAATTACTATTATTAGTTTCATCTCCAATAATATATTTTATTTTCTTCA AGTCACCTTGGGTTATAAATTATTTTGTTTATTATTTTCTTATTTACTTGAGATAGATACGTATTAGTGTTTGAGTCAAC CAAAACCGAGTAAAGACTGGGTAACACAGCGTAGACAAGTCAAGAGCCAATGGGAGCAGAACAAAGCTTTCTACTCTCAT GGCTTTCTCATCCCATGATAAACACTGCTTCCTTTTCCTCTCTTCCCCTTCAGTCTTCAGACAACATGTTTCTCAGATGA TCCGTGAGTAAAATCTTATACTATTGCACTTTAATATTGTTTTATTTCATTTTATTTTCTGTCTCAGCTATATTTCCTGA GAATTCTGCTGAAACTGAATTGCTTTTCAAACTGGAACATATATTATAGGTTTATAGCATGTAGCATTAATATTATATGG TAGTTATTCTGTTATTGAATTTAACGGTTATAGAAAGTTTGTTTTTAAGAACCAAGATGTCTGTCTGTTTTAGGAAGGAA CTTTTCTCTTTCTTCTGTTCTTGTTTCTCAATCACCATACATTTTTTGATAGCATGTTTGTACCGGCTTCTTTTTCCGAG GATCAATTCTGACACGCGGAAGCTACTTAAAGAAGCTTTTTCCTAGAATTGGTTTTGACAATAGAATCAATTGTAGAAGT GTTTCCGAAAACATCAAGGGTGTGTTTGGTTTCCTGTTCCCAGAATCAATTATGGTAGAGTAAAATCAATTATGGATGAA AATATTGATGTTTGGAGTCATTTTGGAGAATCGATTTCAAACCCAAAATCAATTCTGATAGAAGCTAGAGATTAACTTTT GCTTTAATCATAATCAATTGTGAGATGTTACAACTGAATTTTACAACATTACCCAACAGAAATCACTTTTTCATAATGTA TCCTTCCCATTCAACTCAATTTTACAATAGTCAATTTAACAAAACCAATTGTGACAAATGTTGATCCAAACACGCACTAA CTGTTGCTAACTTCATGCTTTCTTTTCCATTTATCTTTTTATAATATTTATGGTCAATGTTAGTTTCATTTTTTAGACTT ACATGTGTTTTGTTCATTTAGCTCACCCCAGTGCTGCCATTTGTCTCAGTTGAGCATATGCAATACAAGAGGGAAATTAA TGCTGACCAGATATATGCAAACCAGTTGCTAGCTAACTTGTACTGCTCCATATGCCATTTGGGGTCTCAGCAGAACATGT TGCTTTGAAGAGAGAATTTCAAGAGCTGAAAAATTAGATGGAAAATGCCAAGTCTAGGATAGCTATGGCAGAAGCTCTAC ACATGGAGCAGATAATTGGAGGGGTTCAGAAGTCTAATTCCATAAATTCAGCACAAGAGAAGGAAAGTAGGTATTTGGAA AAGAGAAATTCATTGGGAAGGACACCATTGATGCCTCTTCAGTCGTTTTACTGTCCAATCTCTTACGATATTATGGTGGA TCCTGTGGAGACTTCCTCTGGCAGGACATATGAAAGAAGTGCAATAGAGAGGTGGTTTTCTGAAGGGAAATCTCACTGTC CCTTAACCATGTTGCCTGTTGATACTTCAATCCTGAGGCCTAATAAGAATCTGAGAGAGTCTATTCAAGAATGGAAAGAC AGGAACACAATCATTACCATTGCTACTATCAAATCCAAACTTGAAACAAATGAAGAAGATGGAGTGCTTCAATCGTTAGA TGAATTGCAGGACCTGTGCTTAGAAAGAGAGGTGCATCGAGAATGGTTAAAAATCGAGAATTACACTGCTGTTCTTATTG GCCTTCTTGGTTGTAGAAACTGTGAAATAAGGAAGCGTGTTCTGCTCATCCTGTCTTTGCTTGCAAAGGATAACGCAGAG AACAAGGTACCTCATATATCCTTCTCAAGGTTAAAATATAGCATGTTTGGATCAATTTCTCTTTCTTTAGTATGAATTTT GGCACGCAGAAGCTACTCATAAAAGCTTCTTCCCAAAATTGATCTTGGTTTTGAAATTAATTGTAGAAGGATTTCCAAAC ATGCACTATGCATGTTTTTGGATTAAAACAGAAGGAAAATATCTTGTTTTTGCATAAGAAAGATAATGATAGTTCTTTTC TGGTAGGAGGATATTGCTAAAGTGGATACTGCACTTGGATCAATTGTTCGCTCACTTGCGCGTCAAATTGAGGAAAGGAA GCTGGCCCTGGAGTTGCTGTTGGAGTTATCTAAAAGTGACACGGTGTGCGATCTCATAGGAAACATTCAAGGAAGCATAC TTCTCTTGGTAACAATGTTAAATAGTGAGGATGTTGAAGCAGCAAAAAATGCACAGGAGGTGCTAGATAACCTCTCCTTC CTTGATCAGAATGTTATAGAGATGGCAAAGGCAAATTATCTTAAGCCTATACTGCGCAAACTTTCTACAGGTATTTCATG AATTAGACACACCATCTGAACTTCTAGCGATCTATGTCTTGATCAGCATCCGTGAAGAGTAATGTTTGTACTCCAAAAAT TTTATTCTTCTTGTACTTTTTTCTGACTCTTATTTTGAGAAGTGGCATGGTTCTTAAATTTAGCAGCTGCATACATGCAG CTCCATGACTTCGATGGTGGAAAAATTTGTCCTTTATAAGAAATATGAAATCCACTCCATCTCATTTCTAGAATTCTATA TGCGTTAATGCCTTGTGCTTATTGACAAAACTAATGAAAATTGGTAATGGTTAGAAAACAAAGTTGAGAAGAATCCTTTT TTGTTTCTTGTTTTTCTTTTTTACTTGATGTGTGTAAATTATCACGTACCTATTATCTGTGTTGTGAGTGCATGCATGTG CATCTGTATAGTATATATGCATGTAGAAAGTAGAAACATTACAGAAAATGGGTGCATAGAGAAAAATGAAGAAAAACCAG ATATTAACTTGGAGACACAATTGAAGCCAATGAAGTGGAGATGGAAATACTAATAGTTAGTTCACCCACACCTCACGAGA GAAATATGAGTACAAGAGAGAGAAATGAGAGATATGATAGGTGAGTGATAGGAAAAGAAGACAGATAAAAAGTAAAAAGT GGGTGGAAATAAGATAGAAGAGAAAGTGAGGTGTGAATGAATCCAAACCCTGGAAATCCATTGAGTGTTTTGGTAAAACC TTAATACTGAAAATCGAACTACAAACATGGACTTTATTCCTATAATGAACAAAGTTTGAACTTTGAATATTCAATGAAAG TGAACTTTTTGAAATATGAATCTGGCATTCACCTACTTGGCTACTCACTGAGATTATCAGTACTTATTTCCTTGGCGTAG GACCAGAAAACATCAAGATAGTCATGGCTGAAACTTTGTCAGAAATTCCATTGACTGACCAGAATAAATTGTCCTTAGTC AAAGATGGGGCACTGCAGCCTCTTCTTCAGCTGCTCGTAAATAACGATCTTGAAATCAAGAACGTGGCTGTCAAAGCTCT ACTTCAGCTCTCAAGCTTACCAGAGAATGGCCTGCATATGCTTAAGGAAGGTGTTGCTCAACCACTATTGGAATTGCTAT ACCATCACAGTTTTCAGTCAACTACTCTGCTAGAACAGGTTGTTGCCACAATAATGCATCTTGCCATATCAACCACACAC CAAGAAGCTGTTGCGGGACAGGTTTCATTCTTAGCTTCTGATGAAGACACATTCAAATTCTTCTCTCTAATTTCTTTGAC GGAACCTGAGATACAGAACAAGATTCTCAAAGCTTTCCAGGCACTGTGCCAATCTTTCTCCGGCTTCTCGATCAGAAACA GGTTGAGACAGGTGTGCACTTGTGGCCCTTTAGTACACTAAAATTTCCTCTATACAAAATGCTTCTTATTACATCAAACT TTTGATTAAATTTCTTTCCAAATAGTAACCTCAAACAACAGCAATAACAATAATAGTCGTATTCATAATTATTATTCATG GTATACAAATGATTACATAATAAGTTCATTAATTACAATTTACAAGTTTCATTTTTATAATCAATACAGATCTCAGCTGC TAAAGTATTGGTCCGCTTGGTAGAGCTTAATACCCAAACTGTGCGGGTCAATGCCTTGAAGCTTTTCTATTGCTTGACTG AAGACGGTGACTCCAGCAACTTCTCATCACATATAACCAAAACATTCATTGAAATCTTGGTCAACATCATTGAGGCTTCT GATGATGCAGAAGAGATGGTTACTGCTATTGGTATCATGGCTAAACTACCGCAGGAGTCTCACATAACACAGTGGCTTCT AGATTGTGGAGCACTTCAAACCATGTTGACTTGTCTTACTGATCAACACAAGCATCTCTCACACAAAAAGCAAGTTATTG AGAATTCTGTTGAAGCTCTTTGTCGTTTCACTGTCTCCACAAATCTGGAGTGGCAGAAGAGTGTGGCTGAAAAGGGAATA ATCCCATTGCTGGTGCAATCTCTGGTTTCTGGGCCTCCTATTTCAAAACGAAATGCAGCAATTTCAATCAAACAGTTTTC AGAAAGTTCATTTGGCCTGAGCAAGCCAATAAAGAAGCCGGGCATCTTCAAACGCTGCCTTGTTGCCCTCGAAACCGGTT GTCCAGCACACCTAGGCACCTGCACTGTTGAGTCATCATTCTGCATTTTGGAAGCTAATGCCTTGGAGCCCCTCGTGCGG ATGCTTGCAGAGGAAGATGTTGGAACATGTGAAGCTTCCTTAGATGCATTATTGACTTTGCTTGATGGTGAAGCACCAAA CAGTGGAAGTAAAGTACTTTCAGATGCAAATGCTATCACACCAATGATAAAACTATTGGGTATTCCTGCTACAAGGTTGC AGGAAAAAGTTCTGGTGGGTTTAGAAAGAATTTTCCAACAAGATGAAGTGAAAAATAATTACAAATCTTTGGCCACAATG CCCTTGGTAGACATAACTCAGAGTAAAGATAGCCGATTGAGAAGTCTTGCTGCCAAGGGTCTTGCTCAATTGGGTGTACT TGATAAACAGTCTTCTTATTTTTAGGATTGGTTCCACAATTATTTGGTTGCTTGTATATTTTAAGGCTCCCTCATAATTT AGTTATTGATCGAGCTCAATGGCGTAGTGTGATCCATATAGTCGACTTCACTTAGTGGGATAAAACTTCTACTGTTGTTG TTGTTGTTGTATATTTTAAGGCACCAGGTGCATTGATATATGTGAAAACATAAATTTTACACAAACAACATGGCTGTTTA AGGTTTAACTTTTCCCTTTCTCTACTTCTTTCATCCTAGATCAATACATAGTTATGTTTCATTGAGTCAGTCTTTGAGCA GAAGCATATAAGAACTGAACTTAATAATAAGGTTGGTTCCTTTCTACATTTCCAGTGGCCAAGGCATTATGAATTAATGT GTCTATCTGAATGGCTTTCATCACAACAACAAAATGCTCATCCAGTGCGATAGTATAAATGCTTTCATCACAG
CDS sequence (LotjaGi1g1v0290900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAAATGCCAAGTCTAGGATAGCTATGGCAGAAGCTCTACACATGGAGCAGATAATTGGAGGGGTTCAGAAGTCTAA TTCCATAAATTCAGCACAAGAGAAGGAAAGTAGGTATTTGGAAAAGAGAAATTCATTGGGAAGGACACCATTGATGCCTC TTCAGTCGTTTTACTGTCCAATCTCTTACGATATTATGGTGGATCCTGTGGAGACTTCCTCTGGCAGGACATATGAAAGA AGTGCAATAGAGAGGTGGTTTTCTGAAGGGAAATCTCACTGTCCCTTAACCATGTTGCCTGTTGATACTTCAATCCTGAG GCCTAATAAGAATCTGAGAGAGTCTATTCAAGAATGGAAAGACAGGAACACAATCATTACCATTGCTACTATCAAATCCA AACTTGAAACAAATGAAGAAGATGGAGTGCTTCAATCGTTAGATGAATTGCAGGACCTGTGCTTAGAAAGAGAGGTGCAT CGAGAATGGTTAAAAATCGAGAATTACACTGCTGTTCTTATTGGCCTTCTTGGTTGTAGAAACTGTGAAATAAGGAAGCG TGTTCTGCTCATCCTGTCTTTGCTTGCAAAGGATAACGCAGAGAACAAGGAGGATATTGCTAAAGTGGATACTGCACTTG GATCAATTGTTCGCTCACTTGCGCGTCAAATTGAGGAAAGGAAGCTGGCCCTGGAGTTGCTGTTGGAGTTATCTAAAAGT GACACGGTGTGCGATCTCATAGGAAACATTCAAGGAAGCATACTTCTCTTGGTAACAATGTTAAATAGTGAGGATGTTGA AGCAGCAAAAAATGCACAGGAGGTGCTAGATAACCTCTCCTTCCTTGATCAGAATGTTATAGAGATGGCAAAGGCAAATT ATCTTAAGCCTATACTGCGCAAACTTTCTACAGGACCAGAAAACATCAAGATAGTCATGGCTGAAACTTTGTCAGAAATT CCATTGACTGACCAGAATAAATTGTCCTTAGTCAAAGATGGGGCACTGCAGCCTCTTCTTCAGCTGCTCGTAAATAACGA TCTTGAAATCAAGAACGTGGCTGTCAAAGCTCTACTTCAGCTCTCAAGCTTACCAGAGAATGGCCTGCATATGCTTAAGG AAGGTGTTGCTCAACCACTATTGGAATTGCTATACCATCACAGTTTTCAGTCAACTACTCTGCTAGAACAGGTTGTTGCC ACAATAATGCATCTTGCCATATCAACCACACACCAAGAAGCTGTTGCGGGACAGGTTTCATTCTTAGCTTCTGATGAAGA CACATTCAAATTCTTCTCTCTAATTTCTTTGACGGAACCTGAGATACAGAACAAGATTCTCAAAGCTTTCCAGGCACTGT GCCAATCTTTCTCCGGCTTCTCGATCAGAAACAGGTTGAGACAGATCTCAGCTGCTAAAGTATTGGTCCGCTTGGTAGAG CTTAATACCCAAACTGTGCGGGTCAATGCCTTGAAGCTTTTCTATTGCTTGACTGAAGACGGTGACTCCAGCAACTTCTC ATCACATATAACCAAAACATTCATTGAAATCTTGGTCAACATCATTGAGGCTTCTGATGATGCAGAAGAGATGGTTACTG CTATTGGTATCATGGCTAAACTACCGCAGGAGTCTCACATAACACAGTGGCTTCTAGATTGTGGAGCACTTCAAACCATG TTGACTTGTCTTACTGATCAACACAAGCATCTCTCACACAAAAAGCAAGTTATTGAGAATTCTGTTGAAGCTCTTTGTCG TTTCACTGTCTCCACAAATCTGGAGTGGCAGAAGAGTGTGGCTGAAAAGGGAATAATCCCATTGCTGGTGCAATCTCTGG TTTCTGGGCCTCCTATTTCAAAACGAAATGCAGCAATTTCAATCAAACAGTTTTCAGAAAGTTCATTTGGCCTGAGCAAG CCAATAAAGAAGCCGGGCATCTTCAAACGCTGCCTTGTTGCCCTCGAAACCGGTTGTCCAGCACACCTAGGCACCTGCAC TGTTGAGTCATCATTCTGCATTTTGGAAGCTAATGCCTTGGAGCCCCTCGTGCGGATGCTTGCAGAGGAAGATGTTGGAA CATGTGAAGCTTCCTTAGATGCATTATTGACTTTGCTTGATGGTGAAGCACCAAACAGTGGAAGTAAAGTACTTTCAGAT GCAAATGCTATCACACCAATGATAAAACTATTGGGTATTCCTGCTACAAGGTTGCAGGAAAAAGTTCTGGTGGGTTTAGA AAGAATTTTCCAACAAGATGAAGTGAAAAATAATTACAAATCTTTGGCCACAATGCCCTTGGTAGACATAACTCAGAGTA AAGATAGCCGATTGAGAAGTCTTGCTGCCAAGGGTCTTGCTCAATTGGGTGTACTTGATAAACAGTCTTCTTATTTTTAG
Protein sequence (LotjaGi1g1v0290900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MENAKSRIAMAEALHMEQIIGGVQKSNSINSAQEKESRYLEKRNSLGRTPLMPLQSFYCPISYDIMVDPVETSSGRTYER SAIERWFSEGKSHCPLTMLPVDTSILRPNKNLRESIQEWKDRNTIITIATIKSKLETNEEDGVLQSLDELQDLCLEREVH REWLKIENYTAVLIGLLGCRNCEIRKRVLLILSLLAKDNAENKEDIAKVDTALGSIVRSLARQIEERKLALELLLELSKS DTVCDLIGNIQGSILLLVTMLNSEDVEAAKNAQEVLDNLSFLDQNVIEMAKANYLKPILRKLSTGPENIKIVMAETLSEI PLTDQNKLSLVKDGALQPLLQLLVNNDLEIKNVAVKALLQLSSLPENGLHMLKEGVAQPLLELLYHHSFQSTTLLEQVVA TIMHLAISTTHQEAVAGQVSFLASDEDTFKFFSLISLTEPEIQNKILKAFQALCQSFSGFSIRNRLRQISAAKVLVRLVE LNTQTVRVNALKLFYCLTEDGDSSNFSSHITKTFIEILVNIIEASDDAEEMVTAIGIMAKLPQESHITQWLLDCGALQTM LTCLTDQHKHLSHKKQVIENSVEALCRFTVSTNLEWQKSVAEKGIIPLLVQSLVSGPPISKRNAAISIKQFSESSFGLSK PIKKPGIFKRCLVALETGCPAHLGTCTVESSFCILEANALEPLVRMLAEEDVGTCEASLDALLTLLDGEAPNSGSKVLSD ANAITPMIKLLGIPATRLQEKVLVGLERIFQQDEVKNNYKSLATMPLVDITQSKDSRLRSLAAKGLAQLGVLDKQSSYF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 799 | 799 | 0.0 | – | |
| PANTHER | 1 | 799 | 799 | 0.0 | – | |
| Gene3D | 34 | 130 | 97 | 1.7E-24 | ||
| SUPERFAMILY | 49 | 125 | 77 | 1.61E-23 | – | |
| ProSiteProfiles | 52 | 126 | 75 | 31.094 | ||
| SMART | 56 | 119 | 64 | 1.2E-20 | ||
| CDD | 57 | 98 | 42 | 1.05209E-19 | – | |
| Pfam | 57 | 123 | 67 | 3.0E-17 | ||
| Gene3D | 131 | 320 | 190 | 1.5E-11 | ||
| SUPERFAMILY | 225 | 738 | 514 | 7.16E-33 | ||
| Gene3D | 322 | 427 | 106 | 9.5E-12 | ||
| SMART | 323 | 363 | 41 | 1.3E-4 | ||
| Pfam | 324 | 363 | 40 | 1.1E-4 | ||
| ProSiteProfiles | 334 | 376 | 43 | 9.432 | ||
| SMART | 364 | 407 | 44 | 160.0 | ||
| Gene3D | 428 | 660 | 233 | 3.9E-17 | ||
| SMART | 544 | 590 | 47 | 130.0 | ||
| Gene3D | 661 | 796 | 136 | 2.6E-10 | ||
| SMART | 667 | 707 | 41 | 19.0 | ||
| SMART | 711 | 751 | 41 | 210.0 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Ubiquitin-protein transferase activity | Catalysis of the transfer of ubiquitin from one protein to another via the reaction X-Ub + Y --> Y-Ub + X, where both X-Ub and Y-Ub are covalent linkages. | ||
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Biological process | Protein ubiquitination | The process in which one or more ubiquitin groups are added to a protein. |
Expression pattern of LotjaGi1g1v0290900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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