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LotjaGi1g1v0302500.1

Overview

Field Value
Gene ID LotjaGi1g1v0302500
Transcript ID LotjaGi1g1v0302500.1
Lotus japonicus genome version Gifu v1.2
Description Mitochondrial import inner membrane translocase subunit TIM22; TAIR: AT5G24650.1 Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein; Swiss-Prot: sp|Q6NKU9|TI223_ARATH Mitochondrial import inner membrane translocase subunit TIM22-3; TrEMBL-Plants: tr|I1JYE9|I1JYE9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0302500
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:73753110..73756737) extracted from Lotus japonicus Gifu genome v1.2.

GTGAAAATTCCTTTATTTATTTTCTACTCAAATAAAAAAAAATTGACAAGTATATAAAAACAAAACAAAACGAAACGAAA CGTTATCAAAAACAAAAAGAGAAGCAGCAACGAAACTATCCACTCCACACTGCGGCGTAGAAATGGAACCTGGGAAGCAA GGGGTGATGGTGGCGAAGATATTACCACAGCAGCTTCTCAACCCAATAGAGCAGCTTCAAACTCGCTTCAAGGAAGTCGA ATCCGGCTTCAAACTCTGGCTCTCCAAGCAATCCATCGCCGTCGAAGCCGCCGTCGTCACCACCACCAGCGCCGCCCAAG GTGCCGCCATCGGCGCCTTCATGGGTACCCTCACTGGGGACGCTTCCTCCCCGTTTCCTACTCCGCCACCTAATGCCTCT CTTAACCCTCAGGCTATGGCTTCTCTTAATCAAGCTCAGGTTGAGCTCTATTTCCCCAATTTTGATTTTAGGGTTTTGAA TTTTTTTGATCAATTTAGGGTTTTGATTGTTTGTTTATTGTGTTGAAGGCTCTTGCTGGAGGCCCTTTAGTTCAAGCTCG TAATTTTGCTGTCATGACTGGTGTGAATGCTGGTATTACAAGTGTTTTGAAAAGGATAAGGGGGAAGGAAGATGTGCAGT CCAGGTTTGATTTCATGAATTTCATTGCCTCAATTCACAGTGATACATGTTTTGTGAGTGAAATTATTGAAATTCTGCTG CTTTTATTGCTTGGCAGTTTTGCTTTTACCTTTTCTAAATCTGAGCTCCTATAATTGTTCAAGCAACATATTTGTTCCCT ACAATCCCTTACCCAATGTTGTTAATTGCACGTTAGCGAAAAACTGCCATATTTGACAAATGCAGATAATGATGGCGGAT GTTGGATTATTTTGGGATATTGGCCATGTCGGAGAGCCAAAAACCTGCCATGTGATTCGGTCGTGGAGGATGTTTTATAA ACTGCCATTACCTTAAATGATTTTTAATTGTATACTCTTTATGCATGTAAACAATGTACTATTGCAAGTGGGGTCATACT TGGAAATATTTGTGAGCCACCTTTCCTTACATAAAATCTTGTTTTGGTCAACCCATTGTCGATAATATCAACTCTGCTTG TATGTACTATTGGGATGGTACTATTATTCATAGCGATTACAACTATTAAAAGCTTAAAGGAAAAGGTAAAGTTTTCATGT TTATTCTCCTCGTTTAAATGGGAAAAAATGTTTGTTGTTTGAAAGATAGATAGAAGGAAGTTGACATTACCTGTAAACAC TATATATGACTGCTTTTATAGCTACCTTACTTGTGATTGGTGTCAATCACTCAATTCAAATAGGTTTAAATTGGCTCTTC TATTTCTTTCTTTTCCTGCAATGTTGTGAAGTGTATACACTTTGGCCGATTCATGACTTCCGACCCCTGTAGTCAGGTCA TGCTGGATTAGTTGAATCACTTGAAACTAAGAAGAAAATTTCCTTCTTCATACATTATTTTTTTATCAAAAAAAATTTAG AAGTGAAAAAGCGATAGAAGAAAAGGTCTGATGCTATGAGTATATTGTATATTTAGTGTGATCTTCTCTTCTACATTACA TTTGACTATTATGGTCATGCATGACTGAATATTATTATTACGTACCAAACAAAAGCTTTTATTCATTTCCTATTGTGTAA TAATATGCTCAGTATTCAGGTTTGCTATGTACTTATTACAACCAAATATACTTTCTTAAAGCAGTTATGATTTTGAGAAC TCACTAAATTGCTATTGCAGCATGGCAGCAGCTTTTGGCTCTGGCGCCATGTTTTCATTGGTAAGTGGCGTGGGCGGACC AAATCAAGCAGCAAATGCAGTCACCTCTGGGCTTTTCTTTGCACTTGTTCAAGGTGGACTTTTCCAGGTGAGCATGAAGG AAAAACAAATGTATCTTTGATGCAGTGTCTGTATATTTTGTACATTTGATCAATAGGAACAATGTCTGCTCGCTTTCCAT GTTGGCAACATAAAACAGTAAATGAGTGTTGATTGATATCATCTACATACAAATTTATGGGATTAATCCTTGTTAGGCTT TTAATTTACCTAGTGTATAAAATTTTGTACATGACTTTTTGGCTGTGTCCAGGTGAGGTGTGCTTAGCACCTAGATCTCT GTTTTGTGTGTATGTAGATGTAGATTTATGGTCCGGTGTCCCATTTAACTTTTAGCATGTATTAAACTATTTCATTAATC ATGCAGTTGGGACAAAAGTTTTCTCAACCACCTGTTGAAGATACTAACTATGTGAAAACAAGACACATGTTGCACAACCT TGGCCTTCAGAATTACGAAAAGCATTTTAAGAAAGGCTTGTTAACGGACAACACTTTACCTTTACTAACGGACAGGTATG AAATTAAATTTGTTGTCAGTTTTTTATCTTCATATATGTGTTTACCTAGTATTGAAATGGAAGTCCTTTTTTTTTTTTCC CTATGATGTTTTTTCAGTGCTCTCAGAGATGTGAAGATTCCTCCTGGACCCAGGCTTTTAATTCTAGACCACATCCAGAG GTAGGAGTTTCTCTGTGTTGTCATATAGCATTATTTCCCTGTCTTCCTATACCCTCTTAAATGCTGAAATCTGGCTTCAG GGACCCAGATGCAAAAGAGAAACGAGGAGGCCGGAGTTGACTGATATGAACAGCTTGCTGCCTTCGAACTCTTAGTGACT AAAAGCGTAGAAGGGGGTTTGTGTTGCAAATGAGTTTTGTCATTTTTGTTTATTATGTTTTCAGCTCTATTATTGTTGCA GTGTACTAGATAAAATTTAGTTAACTTTTCGGCTATTTTAGTTGCTGTGAAAAATGGCGTGAAAGTTAATTCTGAAGCAT GAATTTGTTAGCTTAAATAAGAAAAGTTCTCTCTTCCTTTTGGAGGAATTGTCACTGAGTGATTACATGAATTCTGTCTA ACATCCATGTAGTTGTTAGATTCTACCTACATGTTTGGACTAGCTTCTCTTTCTTAAGAATCAATTCTGGAATCTAGAAG TCATTCACAAAAGCTTCTCTTCAGAGTTAATTATGGATTTATAATCAATTCAAATTCCAAGCATGCGCCATATAGATGAT GATAATTTGTAATATAAAAAATGTCTTGCTTTTCAATATAGCACAAGCTTCTCTTTCTTAAGAATCAATTCTGGAATCTA GAAGTCATTCACAAAAGCTTCTCTTCAGAGTTAATTATGGATTTATAATCAATTCAAATTCCAAGCATGCGCCATATAGA TGATGATAATTTGTAATATAAAAAATGTCTTGCTTTTCAATATAGCACACCAAACACTTACAGACGTGAGAAGGAGCGTT GGTTGTACAATTCTCCTGAAAAACTTGTGGCATAGATGCTCCACCAAATTTACTGTTCACTACCAGCAAGTTATGTTCTA TACAAAAAAAAATTCTTCCTGTTATTTTCATTTACCTTAGTTCTCACAGAAAATGTTATTTATCTTTTACGTCTGACAAA TTTTACACACTTGTCTTGGTTGTGGAAGGAGCTTGAATTAGTAGAGAAACTGTTAGAAAGAAAAAGTTTTTAAAATGGAC AAGGTTCAGAAAATAAAAAAGAAACAAC
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0302500.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGAACCTGGGAAGCAAGGGGTGATGGTGGCGAAGATATTACCACAGCAGCTTCTCAACCCAATAGAGCAGCTTCAAAC TCGCTTCAAGGAAGTCGAATCCGGCTTCAAACTCTGGCTCTCCAAGCAATCCATCGCCGTCGAAGCCGCCGTCGTCACCA CCACCAGCGCCGCCCAAGGTGCCGCCATCGGCGCCTTCATGGGTACCCTCACTGGGGACGCTTCCTCCCCGTTTCCTACT CCGCCACCTAATGCCTCTCTTAACCCTCAGGCTATGGCTTCTCTTAATCAAGCTCAGGCTCTTGCTGGAGGCCCTTTAGT TCAAGCTCGTAATTTTGCTGTCATGACTGGTGTGAATGCTGGTATTACAAGTGTTTTGAAAAGGATAAGGGGGAAGGAAG ATGTGCAGTCCAGCATGGCAGCAGCTTTTGGCTCTGGCGCCATGTTTTCATTGGTAAGTGGCGTGGGCGGACCAAATCAA GCAGCAAATGCAGTCACCTCTGGGCTTTTCTTTGCACTTGTTCAAGGTGGACTTTTCCAGTTGGGACAAAAGTTTTCTCA ACCACCTGTTGAAGATACTAACTATGTGAAAACAAGACACATGTTGCACAACCTTGGCCTTCAGAATTACGAAAAGCATT TTAAGAAAGGCTTGTTAACGGACAACACTTTACCTTTACTAACGGACAGTGCTCTCAGAGATGTGAAGATTCCTCCTGGA CCCAGGCTTTTAATTCTAGACCACATCCAGAGGGACCCAGATGCAAAAGAGAAACGAGGAGGCCGGAGTTGA
Download CDS Sequence

Protein sequence (LotjaGi1g1v0302500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MEPGKQGVMVAKILPQQLLNPIEQLQTRFKEVESGFKLWLSKQSIAVEAAVVTTTSAAQGAAIGAFMGTLTGDASSPFPT PPPNASLNPQAMASLNQAQALAGGPLVQARNFAVMTGVNAGITSVLKRIRGKEDVQSSMAAAFGSGAMFSLVSGVGGPNQ AANAVTSGLFFALVQGGLFQLGQKFSQPPVEDTNYVKTRHMLHNLGLQNYEKHFKKGLLTDNTLPLLTDSALRDVKIPPG PRLLILDHIQRDPDAKEKRGGRS
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR14110:SF6
19 253 235 1.6E-121 –
PANTHER
PTHR14110
19 253 235 1.6E-121
IPR039175
Pfam
PF02466
54 171 118 6.6E-11 –
SUPERFAMILY
SSF47769
196 254 59 1.3E-7
IPR013761
Gene3D
G3DSA:1.10.150.50
199 260 62 4.7E-9
IPR013761
CDD
cd09487
200 251 52 2.10427E-11 –
Pfam
PF00536
202 251 50 2.3E-6
IPR001660

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of
GO:0042721
Cellular component TIM22 mitochondrial import inner membrane insertion complex A multi-subunit complex embedded in the mitochondrial inner membrane that mediates the inner membrane insertion of multi-transmembrane spanning proteins that contain internal targeting elements. In yeast cells, TIM22 is a 300-kDa complex, consisting of four membrane integral subunits, Tim22, Tim54, Tim18 and Sdh3, and a peripheral chaperone complex consisting of the small TIM proteins, Tim9-Tim10-Tim12.
Subterm of
GO:0045039
Biological process Protein import into mitochondrial inner membrane The process comprising the import of proteins into the mitochondrion from outside the organelle and their insertion into the mitochondrial inner membrane. The translocase of the outer membrane complex mediates the passage of these proteins across the outer membrane, after which they are guided by either of two inner membrane translocase complexes into their final destination in the inner membrane.
Subterm of
Part of

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0302500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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