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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0306700 |
| Transcript ID | LotjaGi1g1v0306700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein, putative; TAIR: AT3G25970.1 Pentatricopeptide repeat (PPR) superfamily protein; Swiss-Prot: sp|Q9LU94|PP255_ARATH Putative pentatricopeptide repeat-containing protein At3g25970; TrEMBL-Plants: tr|K7MRX0|K7MRX0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0306700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:74769807..74774533) extracted from Lotus japonicus Gifu genome v1.2.
GGAAATTCTTCTTTTTGGTATGATGTTTGGCTTAGCTCAGAGAAACTCTGTCATCATGTTCATATATCTAATACCACCTC GTGGGTGGAGGACATGTTGAACCATGAGACTTGGAATTTGTCTCGCTTGTCCACTTTGAGTCTGATCTAATCCATCAGGA AATTTCGGTTGTTCCTATCCTAGCTTGCCCTACAGTTATGGATGTTATGTGATGGTTGGCAACCCATAATGGGCAATACA CATCTATCTCGACTTATGAGGTCATTGCGGGGGTTGGCGATGTACCTTCTAGACCTTGGCAGAGTATCTAGCGTTGTAGA GTTCCAAAAACAAATAGGTTCTTTCTCTGGCTCATTGCAGAGGAAACCCTCCCTACCAATGCCAAGAGACACTTGAATCA CCTGAGTTCCAATGTCGCTTGTTCTAGATGCCATGTTAAGATTGAGGATGTAAATCACATATTTTGAGTCTACCTCATGG TTTGTGATTTGTGCTCTCAATTTACATTGACTCTTCTCTCTATTCAAGAGTAGATGTCATTTCAGGTTTGGTTTAGTAAG CTTTTGCATAGCCTTCAAAACATCTTGGTTGTTGTTGTTTTTTGTTGGTTATGGTGTTGGCGAAATGATCATGTGTTGGG TGCTCGATCGTGGAGGCTCTATGTTTTGCGTCAAGTCCTGAATGACGTCGTGTGTTGGAGGAGATGGCCAACTATTTCTC AACCGCAACCACCTGACAACCTGCATACCAGCGTTGCTTCCTTGACAGCAGTTGCGAGCCTGTGTTATATTTTTACAGAT GGCCGTTTCAATCTCATCTCTAAAGGAATTAGGTGCAATGCAGTTGTGAGAGATGTTCATGGTAATTAGATTTCCGGAGT GTCAGTTAGCTTTGGGGTTGGAAATGCTTTCCTAGCAGAAGCCTTAGCTATAAAAATTGGTTTGAAGCATGTCTGGGATA TGGGCCATAAGGTTATTATGTGTTACTTTGATTGCTCGAATTTAGTTGATACCTTTCACCAAAACTTGGATGTTTCACAG TACTAGGCGATATACTATTATGAGGGTTCGAGCCAGACTTGGTCGAGACTGTGATGCTCACATTGCTTACATTCCGTGGG AGAGAAGCAATGCAGGAGACAAGTTAGCACGACAAGCGAGCAGGGATCACGCTCAATAATGTATTTGGAGACTACCTTCA TGTTGTTATTTCGGCCTTGTGCCTCGATGTGCTAGTCTAGTATTTGTTGTTTTTAGTCTTCCTCTTATGAAGAAAATATA TTATATTAACTATTAACTTTATATGAACAATTTTTTTTGTTTGCATAGGAAAATTTATATGAATAATTTGATGATAATTG TGTATAATTGAGAATTAATTTTTTTTTGAATGTTAACAAATTTTTTTGAACGATTGGTATATTAATAATTTATTCTTTAG GTGACCATAACTCGATATTAAGAATCTTTCAATACCTTATATGATAATACAAAATGCAGGTAGATTTTAACTTTCTTCAA AAAAAAAATCATTTTGTAACATGAAGATGAATTTTCCAAAGAAATAAATTTGATAACAAAATGTCAAAATCTGAGTGCCT CAAAACGCAAACGCTTTTATTTAGCTCAACCCCACCGGTTCAGATGTTCATGAATGAATGAAGAGGTTGCACCCGAGCTC ACCCATCACGTTGCTTGGGCTCAAAGCATCCCATTGCTTAGCAATCAAGTTAGCCTCCATTGCAGACCTTTACACTGCCA ACAACATCATAACAGCATACTCAAAATGCTCAGAACTAACGCTTGCTCACCAGTTGTTCGACGAAATGCCCCATAGAGAC ACCGTGTCGTGGAATGTCATGGTTTCCGGTTATGTAAATGCAGGTTACCTGGAAACTGCGTGGAAACTCCTCGGTGCCAT GAGAAGCTCTGGACTCGCACTCAACAACCACACGTTCGGAAGTACTCTCAAAGGGGTTGGCCGAGGTTGCCGCATCGAGC TCGGGCAACAGCTGCATTCTGTAATGCTCAAGATGGGGTTCACTGAGAATGTGTTTTCCGGCAGTGCCCTTCTTGACATG TATGCCAAGTGTGGGAGAGTTGCTGATGCCTTTGCCGTGCTCAGGTCCATGCCGGAACGCAATTATGTGTCGTGGAACGC GCTCATTGCTGGTTATTCGCAGGTTGGTGACCGTGACATGGCGTTTTGGATGCTGAGGTGTATGGAGTTGGAGGGTGTTG GGATTGATGATGGCACGGTGTCTCCCCTTTTGACATTGCTTGATGATGTTGAGTTTTGCAGGTTGGCAATGCAGCTGCAT TGTAAGATAGTGAAGCATGGATTGGAGTCCTTTAACACTGTCTGCAATGCCACCATCACGGCTTATTCAGAATGCTGTTC TCTGCAAGATGCTGAGAGAGTATTTGATGGTGCTGTTGCTTATCGTGACCTGGTTACTTGGAATTCTATGCTTGGTGCTT ACTTGTTGCATGAGAAAGAAGATCTTGCTTTTAAAGTTTTTATTGATATGCAGCATTTTCTGTTTGAGCCTGATGCTTAT ACTTACACTGGGATCGCCAGTGCTTGTTCAGCACAAAAGCATAAAAGCCTTGGAAAATCTTTACATGGGTTGGTGATAAA AAGGGGGTTTGAAGATTCTGTGCCGGTTTCAAACGCTTTGATTGCTATGTATCTCAGATTTGATAATAGGTGCATGGAAG ATGCATTAAGAATCTTCTTTTCCATGGATGTGAAAGATTGTTGTACTTGGAACTCTGTTTTAGCAGGGTATGCACAAGTT GGTTTGAGTGAAGATGCTTTGAATTTATTCGTACAGATGAGATCTTTGGTCATAGAAATTGACCACTATACCTTTTCAGG TGTGATCAGATCATGTTCAGATTTGGCAACACTTCAGCTAGGTCAACAAGTTCATGTCTTATCACTTAAGGTAGGCTTTG ATACCAATAAATATGTTGGCAGTGCATTGATCTTCATGTATTCTAAATGTGGTATCTTAGAAGATGCTAGGAAATCTTTT GAAGCAACTTCCAAAGACAATGCAATTCTTTGGAACTCAATCATCTTTGGGTATGCACAACATGGACAAGGAAACATTGC ACTAGACCTCTTTTACTTAATGAGAGAGAAAAAGGTGAAACCCGATCATATAACTTTTGTTGCAGTTCTTACTGCTTGTA GTCATAATGGGCTAGTAGAAGAAGGAAGCTACTTTATGCAGTGTATGGAGTCTGATTATGGTATTGCACCACGAATGGAG CACTATGCTTGTGCAATCGATCTCTATGGTCGGGCTGGGTGTCTAGAGAAGGCAAAAGCTTTGGTTGAAACAATGCCTTT TGAACCTGATGGAATGGTTTTGAAGACATTATTAGGTGCCTGCAGAAGTTGTGGTGATATCGAGTTAGCTAGTCAAGTAG CAAAATCTTTGCTAGAGCTAGAGCCTGAGGAGCACTGCACATATGTTCTGCTCTCAGATATGTACGGGCGTCTGAAGATG TGGGATCAAAAGGCTAGTATAACGAGGCTGATGCGAGAAAGGGGAGTGAAAAAAGTTCCTGGTTGGAGTTGGATAGAAGT GAAAAATAAAGTGCATGCTTTCAATGCTGAAGATCACTCCCACCCACAGTGCGACGAGATATACATACTGCTACAACAAT TAAAGGAGGGAACTAAGCTGTTTGATGATTTTGTCAATCAAACGTTGCTACTACAATGTTCAGATAATATAGATGATTAT GATGATCAGAAGCTCTTATAATTCTTGTATAGCTGCAATGAGTACATAGAAGAAGACAGGTACCATATGACTAGAGTCAG CAACTTCAGTCTTCAGTTAAGGAAAATTAACATAAAGTCCCTGTGCTTATTCAGGGAGACAAAGCCATTGCAGAGTCTTG AATGGTATTGCCATTTGGTTTCCTAAGTCGTTCTGTAACACATATTTGACCAATTGTCTAAATATGAGATCAAGACCACA ACTGCAATCCATGTAGCACTAGAAGATGAAGGAAGTAATTGGGAACAAGAAGTTCCTTGGGATGGGACTTGGGAGTAACA TTACTGAACTAGTGGACATATAGTGGGTTTGTATTTGTGCCGTACAACCTTCACACACAGGTAAATTTCGAAGCTACAGT ATGAAGATTTTGATAAAACGGAGTCTATCACGACGCCTCCACAAACAGGCGCATAGCATATGAATGACTTGGCAGGGATG GAAGGCTTGGAGTGAATTGTGCAATAGAACTGATTGAGTCAAACAATTCTCCTTGGTTGAATGCTTCAATTTAGAATGGT AAACAAGTTCTGTCGATCAAAGAAAACCTTCCGGGTCATAAAAAAAAATGTTGATCCATCTTGAAAAGGGAAGGCAGAGA ATCATCTCAGGATAAATGAGTTATAAAAGCTTCTTGTCTCTTCGCATTGGAACCATGTGGGGAAATTGAAATCGGATCGT ATAAAATGAAGTCCATTCCAATGTACTAGTATATAGGTTTAGAACCAGTTTGGTTCTTATGATTCCCTCTTTCCGAGGCA GTTCAATCGAAAAGTTAAGCTCAATCCATGTCTCTTGCCAAGTTTTTCAAACTTTGGTTTATGATATTGGAACTGTGTAC CAAATAGACTGTTTGAGTTTATAACCAAAAACATATTCACACATTGAAACCTCTGATTGCATATTCCCATAGTGCAAGAC TTTAAGC
CDS sequence (LotjaGi1g1v0306700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGAGGTTGCACCCGAGCTCACCCATCACGTTGCTTGGGCTCAAAGCATCCCATTGCTTAGCAATCAAGTTAGCCTC CATTGCAGACCTTTACACTGCCAACAACATCATAACAGCATACTCAAAATGCTCAGAACTAACGCTTGCTCACCAGTTGT TCGACGAAATGCCCCATAGAGACACCGTGTCGTGGAATGTCATGGTTTCCGGTTATGTAAATGCAGGTTACCTGGAAACT GCGTGGAAACTCCTCGGTGCCATGAGAAGCTCTGGACTCGCACTCAACAACCACACGTTCGGAAGTACTCTCAAAGGGGT TGGCCGAGGTTGCCGCATCGAGCTCGGGCAACAGCTGCATTCTGTAATGCTCAAGATGGGGTTCACTGAGAATGTGTTTT CCGGCAGTGCCCTTCTTGACATGTATGCCAAGTGTGGGAGAGTTGCTGATGCCTTTGCCGTGCTCAGGTCCATGCCGGAA CGCAATTATGTGTCGTGGAACGCGCTCATTGCTGGTTATTCGCAGGTTGGTGACCGTGACATGGCGTTTTGGATGCTGAG GTGTATGGAGTTGGAGGGTGTTGGGATTGATGATGGCACGGTGTCTCCCCTTTTGACATTGCTTGATGATGTTGAGTTTT GCAGGTTGGCAATGCAGCTGCATTGTAAGATAGTGAAGCATGGATTGGAGTCCTTTAACACTGTCTGCAATGCCACCATC ACGGCTTATTCAGAATGCTGTTCTCTGCAAGATGCTGAGAGAGTATTTGATGGTGCTGTTGCTTATCGTGACCTGGTTAC TTGGAATTCTATGCTTGGTGCTTACTTGTTGCATGAGAAAGAAGATCTTGCTTTTAAAGTTTTTATTGATATGCAGCATT TTCTGTTTGAGCCTGATGCTTATACTTACACTGGGATCGCCAGTGCTTGTTCAGCACAAAAGCATAAAAGCCTTGGAAAA TCTTTACATGGGTTGGTGATAAAAAGGGGGTTTGAAGATTCTGTGCCGGTTTCAAACGCTTTGATTGCTATGTATCTCAG ATTTGATAATAGGTGCATGGAAGATGCATTAAGAATCTTCTTTTCCATGGATGTGAAAGATTGTTGTACTTGGAACTCTG TTTTAGCAGGGTATGCACAAGTTGGTTTGAGTGAAGATGCTTTGAATTTATTCGTACAGATGAGATCTTTGGTCATAGAA ATTGACCACTATACCTTTTCAGGTGTGATCAGATCATGTTCAGATTTGGCAACACTTCAGCTAGGTCAACAAGTTCATGT CTTATCACTTAAGGTAGGCTTTGATACCAATAAATATGTTGGCAGTGCATTGATCTTCATGTATTCTAAATGTGGTATCT TAGAAGATGCTAGGAAATCTTTTGAAGCAACTTCCAAAGACAATGCAATTCTTTGGAACTCAATCATCTTTGGGTATGCA CAACATGGACAAGGAAACATTGCACTAGACCTCTTTTACTTAATGAGAGAGAAAAAGGTGAAACCCGATCATATAACTTT TGTTGCAGTTCTTACTGCTTGTAGTCATAATGGGCTAGTAGAAGAAGGAAGCTACTTTATGCAGTGTATGGAGTCTGATT ATGGTATTGCACCACGAATGGAGCACTATGCTTGTGCAATCGATCTCTATGGTCGGGCTGGGTGTCTAGAGAAGGCAAAA GCTTTGGTTGAAACAATGCCTTTTGAACCTGATGGAATGGTTTTGAAGACATTATTAGGTGCCTGCAGAAGTTGTGGTGA TATCGAGTTAGCTAGTCAAGTAGCAAAATCTTTGCTAGAGCTAGAGCCTGAGGAGCACTGCACATATGTTCTGCTCTCAG ATATGTACGGGCGTCTGAAGATGTGGGATCAAAAGGCTAGTATAACGAGGCTGATGCGAGAAAGGGGAGTGAAAAAAGTT CCTGGTTGGAGTTGGATAGAAGTGAAAAATAAAGTGCATGCTTTCAATGCTGAAGATCACTCCCACCCACAGTGCGACGA GATATACATACTGCTACAACAATTAAAGGAGGGAACTAAGCTGTTTGATGATTTTGTCAATCAAACGTTGCTACTACAAT GTTCAGATAATATAGATGATTATGATGATCAGAAGCTCTTATAA
Protein sequence (LotjaGi1g1v0306700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKRLHPSSPITLLGLKASHCLAIKLASIADLYTANNIITAYSKCSELTLAHQLFDEMPHRDTVSWNVMVSGYVNAGYLET AWKLLGAMRSSGLALNNHTFGSTLKGVGRGCRIELGQQLHSVMLKMGFTENVFSGSALLDMYAKCGRVADAFAVLRSMPE RNYVSWNALIAGYSQVGDRDMAFWMLRCMELEGVGIDDGTVSPLLTLLDDVEFCRLAMQLHCKIVKHGLESFNTVCNATI TAYSECCSLQDAERVFDGAVAYRDLVTWNSMLGAYLLHEKEDLAFKVFIDMQHFLFEPDAYTYTGIASACSAQKHKSLGK SLHGLVIKRGFEDSVPVSNALIAMYLRFDNRCMEDALRIFFSMDVKDCCTWNSVLAGYAQVGLSEDALNLFVQMRSLVIE IDHYTFSGVIRSCSDLATLQLGQQVHVLSLKVGFDTNKYVGSALIFMYSKCGILEDARKSFEATSKDNAILWNSIIFGYA QHGQGNIALDLFYLMREKKVKPDHITFVAVLTACSHNGLVEEGSYFMQCMESDYGIAPRMEHYACAIDLYGRAGCLEKAK ALVETMPFEPDGMVLKTLLGACRSCGDIELASQVAKSLLELEPEEHCTYVLLSDMYGRLKMWDQKASITRLMRERGVKKV PGWSWIEVKNKVHAFNAEDHSHPQCDEIYILLQQLKEGTKLFDDFVNQTLLLQCSDNIDDYDDQKLL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 3 | 3 | - | – | |
| Phobius | 1 | 22 | 22 | - | – | |
| Phobius | 4 | 15 | 12 | - | – | |
| Gene3D | 15 | 117 | 103 | 2.6E-18 | ||
| Phobius | 16 | 22 | 7 | - | – | |
| PANTHER | 19 | 127 | 109 | 1.8E-118 | – | |
| Phobius | 23 | 707 | 685 | - | – | |
| ProSiteProfiles | 30 | 60 | 31 | 8.385 | ||
| Pfam | 33 | 59 | 27 | 0.023 | ||
| ProSiteProfiles | 61 | 95 | 35 | 11.553 | ||
| Pfam | 61 | 107 | 47 | 5.8E-10 | ||
| TIGRFAM | 63 | 96 | 34 | 1.9E-6 | ||
| ProSiteProfiles | 96 | 130 | 35 | 7.059 | ||
| PANTHER | 109 | 233 | 125 | 1.8E-118 | – | |
| Gene3D | 118 | 194 | 77 | 4.1E-7 | ||
| ProSiteProfiles | 131 | 165 | 35 | 9.482 | ||
| Pfam | 136 | 162 | 27 | 0.019 | ||
| TIGRFAM | 137 | 163 | 27 | 0.0028 | ||
| Pfam | 164 | 194 | 31 | 3.3E-5 | ||
| ProSiteProfiles | 166 | 196 | 31 | 6.456 | ||
| Gene3D | 206 | 321 | 116 | 8.4E-16 | ||
| PANTHER | 217 | 313 | 97 | 1.8E-118 | – | |
| Pfam | 264 | 310 | 47 | 1.2E-9 | ||
| ProSiteProfiles | 264 | 298 | 35 | 9.394 | ||
| ProSiteProfiles | 299 | 333 | 35 | 6.5 | ||
| PANTHER | 318 | 423 | 106 | 1.8E-118 | – | |
| Gene3D | 322 | 467 | 146 | 1.6E-19 | ||
| ProSiteProfiles | 334 | 366 | 33 | 5.667 | ||
| Pfam | 367 | 413 | 47 | 1.4E-9 | ||
| ProSiteProfiles | 367 | 401 | 35 | 9.712 | ||
| TIGRFAM | 369 | 402 | 34 | 3.6E-5 | ||
| ProSiteProfiles | 402 | 436 | 35 | 5.338 | ||
| PANTHER | 420 | 632 | 213 | 1.8E-118 | – | |
| ProSiteProfiles | 437 | 467 | 31 | 5.645 | ||
| ProSiteProfiles | 468 | 502 | 35 | 10.764 | ||
| Pfam | 468 | 515 | 48 | 3.9E-9 | ||
| Gene3D | 468 | 671 | 204 | 1.5E-33 | ||
| TIGRFAM | 471 | 503 | 33 | 7.5E-6 | ||
| ProSiteProfiles | 503 | 538 | 36 | 6.774 | ||
| ProSiteProfiles | 539 | 569 | 31 | 6.095 | ||
| Pfam | 543 | 566 | 24 | 0.5 | ||
| ProSiteProfiles | 571 | 601 | 31 | 5.316 | ||
| ProSiteProfiles | 605 | 639 | 35 | 7.333 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0306700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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