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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0307200 |
| Transcript ID | LotjaGi1g1v0307200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ring finger protein, putative; TAIR: AT3G10910.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q9SG96|ATL72_ARATH RING-H2 finger protein ATL72; TrEMBL-Plants: tr|I3SIC0|I3SIC0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0307200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:74825380..74828618) extracted from Lotus japonicus Gifu genome v1.2.
TCCAGAAAACATTGATGGAACTTGCAAAATGGAAGTTTATTGATGGAAGCTTGCAAAATGTTACAAAATGCATAGGTGAG AGAATATGCTATGTTTATTGATGGAACTTGCAACATGGAAGAAAGTTAATCAAGTGCATAGGTGGCAATCAATCTCTGAA AATGATGAAGATCCGATGAAGGAGCAAACATGAAGCTGAACTGGTGGACCCTTTCCTTTGCCATCATGTGCCCACTCTTT GTCCTTGGCACAACAACCTTCATTGCATTTGCACTAGACATCCTCCTAACCGGGATAAAGACGTTACAATCCCATTATGG TATTTCTTTTTAATCTTAAATTTTCATTAACATGTGACAAAGGAATTTGTATTCTTGCAGCAATTTATTGGCCTCTTTAG CAAGGAAAATGGTTGTCTACACCTAAATGAGAACAGTGCCAAAAAAAATACATCAGACATATGATGTGATGCGATAGATA AACATAAATAGAGAAAAAAAATAAGACATAGTTTATGCTGAAGTGTTAAAAAATTGGGATAGTTAGTGAAAAACTACCGT GAAAACAAAATCAAGCTGGACAGACCCAATAGCTATGCGAAGTTACTTCTGTCCATCAGGATTTTTGCTTAGCGTGGTTT TCTCTGTGTATTGAAAAATGCACTCAGTTGATACCTTTTGCATAGCAATCAAACTTGTCTTGGGTTAATAATGCACTAAC ATGAAAGCAAGGTAAAGTTAATCAACCAATGCAGCCAGCATTGGCTATAATCATAAGTGCTATGACTAACAGTACCTCTA AACCACAATCTAACAATGAACGTTGGATGAGAATAAACATAAATGAAGGGAACATGTAACTTCAACTTTAAACTAATGGT TGAGTGGAGGAGTGGGAGAAGGATAATTTGGTGCTAAGAATAAGTGCTTTTATTATTAAGCTAATTTTGATAATTATGTT GGGATCAAGTACCATAATTTCTTCCTCATCTTGATTCCAAAATCAATAAATCCCACAACAACAATAATTAATAACACATA GGAAGGCGACAACAAAGTAGCTTTCTTGCTTCCATTCCGTAACATAATATCTATGTCCTGTTGCCTCTGAAACTTCTTGA AAAACAACAAAGCACCTCAAGACAACCACTCCTCTTAATGTCCAGAGTACATATTACCAACCCATCACAAAATTTGAGTC CTTTACTTATTGCTCTTGAAATATATGGTAAGAAGAACAGCTACAACCACTCCTGTTGGAAAACATCACAAGCCTGTTAA GGTAAGCCTTAAAAGCTTTCAGAGTCATGGTTTCCATTATGGCTTTATAGGATCAGAGTGGAAGGGTCATTAATGACTTG AAGAGTTGGATACTGGATTTGTGTGCTTCTACAACAAAGTGGTTGAGTTAGTTTTCAATTTTCATCCTCCCTAACCCTTT CTGTGGTTTCCCGGAAACTAAAGAGATTGATGCTTCTTTGAAAGTCTTTATCTAGTGGGAACCCTGACAGATATTTCCAT AACTCAAAAGTTCCTTGTTGTAGTATTATAGATCCTATAGGGTCTAGTAAAGAACTGATAAGAAAATATTATTCAAAACT TTTCTTGCTTGGTTTCCTAAACCAAAATTCTTGCTTGGTTTACAATCAAGTCATCTTGTGCATGAGGTTCCACAACAGCA GAAGCTAAAAAACCAACCTCCCTGAGATGTTTCAATCCCTGCAAACTTCTCATTGGGACTATTTGCTCTTGCATTTTCAA GGTCATTAGCTCAAGCTTTTCAAGCATTGGACATAGATTCCTCAGCTGCTATCAAAAGGGTACAAGAATTCTGAGTTTAC TTTGCTGTTGGAATTTTTGGTGTTTTTGGCATAGAGAATCATAATGGATCTTCATCACCATCTACACCGCCGCCTGTTGG TTCACCGTGTAAATTCAACTGATCCAGGGTCGAAGGAATCTCTCACCGGTGGCTCAAATTTTGACACCAACATGCTGTTT ATCTTGGCAGCTTTGCTTTGTGCACTGATATTGGCTCTGGGACTCAACTCCATTGTGCGCTGTGCTTGTTTGCTTTTGAG ATGTAGCCACAGGCTTGCTTTCGAGACGCCGGAGGAGGCCGCAGCTCGTTTAGCCTCGAAAGGGTTAAAGAAGAGTGCAT TGAATCAGATCCCTGTGGTTGTTTATGGTTCAGGTAGTGCTAGTACTAGTATTGCAGCCACAGATTGTGCAATTTGCCTT GGGGAATTTGTGGATGGAGAGAAAGTTAGAGTTCTGCCAGAATGTAACCATGGATTCCATGTGAAGTGCATAGATAAATG GCTGCTCTCACACTCTTCTTGTCCTAACTGCAGACAGTCATTGCTTGACCCTCCATCAATGTCTGAAGCTGCAACTGTCG CAGTAGCTGTAGTTGCAGATGCTGGAACCACGCGCCATGTAGAGAATTCCTTGGGAGGACATGAACCTGGGACTTTAGCT ATAGCTGTGGACGAGGTTGGCTAATTCTACATTCAGGATTTTAAATTGCGGCCGCAGTTGCTGAATTGCGGACAAATGCG GGTTGATGAGGCCGTGATGCCAATGTGGGCAGTCAAAAACCCTTGAGGTTGGAATTCTTAATGTTTAAAGTGATAAACTA GAATGAAGAAAGGGATGAAAAAATTGAGACTGGTTGTTTGTAGCCTTGAGGTTGGAATTCTTAATTTTTAAAGTCTACTA GTATTAACTTATGCAGGATTGATGATATATGTTAGCGTAGAAAAGACTGCTGGGCGATGATTTCAGATACCATCCTGTGT TTGTGCATGTTTTTCTGACATAAGAAGTAGTGATAAATCTTGAATGTTTGTTATCGATGAATAGATTGAAAGGCAAAGTG ATGCACAACTACTTGGATGTTTTGATGGCATTTTGTCAGCAGTAATTAAAAGAGGAAAAGTAAGTTTTATTAATGAATGC CTAATTCAAACTCACTTTACCTTTTCCCTTTTTTCTGTCAATTACATCACTAAAGCATTAACATCTGAAATGAGCTCAAG TGGAGTTTGGAAGTAAATCAAGTTGTTAATGTATATTTAAATAGATAATATAGATTTAGTTCATGATCAGCATTTGGAGT GTTGAACTAACTAAAATTAGTACTGAGAATCAGAATGGCATGTGATTTGGCAATCAAATTAGATGATTATAAATCTGATA TCATCTATTTGCTTTGATTCCCAAAGCAGACACTGATGC
CDS sequence (LotjaGi1g1v0307200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATCTTCATCACCATCTACACCGCCGCCTGTTGGTTCACCGTGTAAATTCAACTGATCCAGGGTCGAAGGAATCTCT CACCGGTGGCTCAAATTTTGACACCAACATGCTGTTTATCTTGGCAGCTTTGCTTTGTGCACTGATATTGGCTCTGGGAC TCAACTCCATTGTGCGCTGTGCTTGTTTGCTTTTGAGATGTAGCCACAGGCTTGCTTTCGAGACGCCGGAGGAGGCCGCA GCTCGTTTAGCCTCGAAAGGGTTAAAGAAGAGTGCATTGAATCAGATCCCTGTGGTTGTTTATGGTTCAGGTAGTGCTAG TACTAGTATTGCAGCCACAGATTGTGCAATTTGCCTTGGGGAATTTGTGGATGGAGAGAAAGTTAGAGTTCTGCCAGAAT GTAACCATGGATTCCATGTGAAGTGCATAGATAAATGGCTGCTCTCACACTCTTCTTGTCCTAACTGCAGACAGTCATTG CTTGACCCTCCATCAATGTCTGAAGCTGCAACTGTCGCAGTAGCTGTAGTTGCAGATGCTGGAACCACGCGCCATGTAGA GAATTCCTTGGGAGGACATGAACCTGGGACTTTAGCTATAGCTGTGGACGAGGTTGGCTAA
Protein sequence (LotjaGi1g1v0307200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDLHHHLHRRLLVHRVNSTDPGSKESLTGGSNFDTNMLFILAALLCALILALGLNSIVRCACLLLRCSHRLAFETPEEAA ARLASKGLKKSALNQIPVVVYGSGSASTSIAATDCAICLGEFVDGEKVRVLPECNHGFHVKCIDKWLLSHSSCPNCRQSL LDPPSMSEAATVAVAVVADAGTTRHVENSLGGHEPGTLAIAVDEVG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 36 | 36 | - | – | |
| PANTHER | 6 | 179 | 174 | 8.5E-67 | – | |
| PANTHER | 6 | 179 | 174 | 8.5E-67 | – | |
| TMHMM | 36 | 58 | 23 | - | – | |
| Phobius | 37 | 58 | 22 | - | – | |
| Phobius | 59 | 206 | 148 | - | – | |
| Gene3D | 72 | 162 | 91 | 4.4E-22 | ||
| SUPERFAMILY | 100 | 164 | 65 | 5.18E-21 | – | |
| SMART | 111 | 162 | 52 | 0.0094 | – | |
| CDD | 114 | 157 | 44 | 1.82191E-17 | – | |
| Pfam | 114 | 157 | 44 | 1.6E-14 | ||
| ProSiteProfiles | 115 | 157 | 43 | 12.297 | ||
| SMART | 115 | 156 | 42 | 1.9E-7 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0307200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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