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LotjaGi1g1v0309000.1

Overview

Field Value
Gene ID LotjaGi1g1v0309000
Transcript ID LotjaGi1g1v0309000.1
Lotus japonicus genome version Gifu v1.2
Description Dual specificity protein phosphatase, putative; TAIR: AT3G10940.1 dual specificity protein phosphatase (DsPTP1) family protein; Swiss-Prot: sp|Q9SRK5|LSF2_ARATH Phosphoglucan phosphatase LSF2, chloroplastic; TrEMBL-Plants: tr|I3SHM7|I3SHM7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0309000
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:75055825..75059256) extracted from Lotus japonicus Gifu genome v1.2.

CTTATTGCCATATTTTACACTCATCTCTATTTTCTTCCTACTCACTTCTCTCATCTCTGTTTCATGTGTAAAGACCATTA GATACCAAGTAATTTTCTTTGAAAAAAATGATAAATGAATTTTTTTAATATTCAAGGGTGTTTTAGTCAAAATAGCTTCA TGATCACCTCGTATAAACAATCTAGACCAGAATCAACACTGAGATGCAGACAAACAAAGAGAAGCAAAGAGAAATGGAAG CCCTTTCTAACATACGTTCCCCTTCACTACTCACAGCTCCTTTGGATACCCAGGTGCTTTCAAAGCAGAGGAAGCATAAA TCTCCACACAGTTTCATGGTTCCTTCAAACATCTCTGTCAGGCTTAGCAAAATCTGTTGTACACTGTCAGAAAGTGAGAT TGAGGAGAACCCCACAAGCAAGAGTGCCCCTAAATCCAAGGACAGGATGGAGGACTACAATACAGCTATGAAGAGGATGA TGAGGAGCCCTTATGAGTATCACCACGATCTGGGTCAGTTTTTATTCATCTCTTTCCAACTTTTGTTTCGCCATTTACTG TATCAAATGCTGCCACTGTTTGATATGACTATGATGCCAAGAAATGTCATTTAGAGGAATGCATTTCCTTCACACTGCAC ACAACACGGTTGTTTGTTTATTAGTGTTGTATTAATAGATGGTCCTAGACAGAATTATGATAGTATCATATGGACATGGT TCTTTTCCTTCATTGTGTCTTTTACCTTTAAATTGGAGAGGGAATTATACCCCAAGACACAAAAAAAGATTGAGGATTTA CTATGCTATATAAAGTTTCTAATTAGCACCAAATGATTTAGTTTTAATGACCGAGGCTATGTTTGGATATTCGTTGACAG TAATGTAAACAAACGTTAGCATGCATTTCAAAACAAAAAAGAGAATGGAACTCTTGGTGATTAAATGAAAGTCTTGCACT CACTTGGTACCCAGACACACTCAACTGGAACCTAAACACACGCAGTAGTTTTGATAACTTTATGATGGTTATCCGTTGAA TTGGATGTGAATGTGTTTTTTCTCAATCTAATAACTTTTTTCAGTTGAAAATACTGTCTTGTAAAACCAAATCTGTTAGT TGAATGTGCTTACAACTGGGAAAAAAAGTCATTTGAAGAGGCTGTCTTATGTTCAATGGTAGAGATTCTTTGTTGCCCGA AAAAATACTTTAAAAGCAAAGCCTATGCCATATGTTGCTGCGTGAAGTTCAATTTTAATTGGTACAGATTTGAGTTTCAC AGTTGATGTGAAGGGCCCTTAAAATAACTATTTCTCTATCGTTAATTGTTCATTTATTTATGGTTTAGACTCAGACCTAC TATGTCATTCAACTGATACAACTAGTGGTTCCTAATTTCAGGTATGAATTACACACTTATAACTGAGAATTTGATTGTGG GATCCCAACCACAGAAACCTGAAGATCTGGATCATCTTAAAAAGGAAGAAGGTGTGGCATACATTCTAAACTTGCAGCAG GATAAGGATGTTGAATATTGGGGAATAGACTTGCAGTCAATAATAAGACGATGTCGTGAACTTGAAATTAGGCACATGAG GAGGCCGGTAAGCTAGGCCACATTTTATGTAAATTTATTAAGGAATTAAACGGTACCATGTATTTTGTATGATCTAGACA ACATGCTAAACGAACTTGTATGATGTCATTAGGAAATAGAGTTTTGAAATGTCATGGCTAGTCTCTTTTCCCAACTCAAG GTTCCTCTTTAATGCAACTGACTATGAAATTGTTCCAAGTTCATTGAATGCTTTGCTTACATGTTCTGAAATTAAAATTA TCATTCACATTTTGATACATTGTTTTATTTACATTATTAGGCAGTAGACTTTGATCCAAACTCCTTACGAGGTGCACTAC CTAAAGCAGTCTCATCCTTAGAATGGGCAATTTCTGAGGGAAAAGGAAAAGTTTATGTGCATTGTACAGCTGGACTTGGA AGAGCTCCGGCAGTGGCAATAGCTTATTTATTCTGGTTTTCTGGCATGAATGTAAGTCCTAAACCCTCACCTTATAATTG AATCCAGAAACGAATTTCATACCACCTATTTAACATTTCATGAGTGTTATGGTTGCACACCATCTTGGTGTTGAAATGTG AGATTTTGCTTGAAATACTAATAATAGAAAAGAAAAAAGAAACACTATTAAGGCTAGATACTCGTTGCCACTGGTGCAAA TGGACGTTAGCACTTAGACAAAAAGTGAACGGAAATCTTCTTATGGATTGAGATAAAAGTTCGTTCAGATAGCACTCAAT TGGTATCCAAACATTATTAAATCAGTGTGACAGATAGGTTCACAGTTTTTCTAGTTTAGAAGTGTAATTTTTCACAAGTG AATGTGGCTTTATTCTCTTTGGGCAGCTAAATACAGCATATGATATGCTAACTTCAAAGAGACCTTGTGGACCAAATAAA AGAGCAATACGCGAAGCTACTTATGATTTGGCTAAGAATGATCCATGGAAGGAGCCATTTGAGAATCTTTCCGACCATGC TTTTGAGGATATTGCAGACTGGGAGAGGAACCTGATTCAAGATCGTATCCGCTCCCTTCGTGGAACTTAGACAACTTTGG TAAGTGTCTCTGTTACGAATATTGGGAGTCTGCATTACATATATAGAGAGAGAGCTACAATAACTTTTACCCTTTTTTTG CTCTTGGCCATCAATAGGGTGAACCAAATCATCCCCATATTGAGAAATATTTCAAGCCATGCATGCCTTTCATGTGATAT GATGTTGAGATGTAATGCTGTATTTGTCATTAACAGGTTTCTATTTATCAAGATTCCTGCATCACTACATAAGTTGGCAA CCCTGCATGGATGGTTTGAGATTCCCTGATGATACTGCTGTAAAATGGAGATTTTTTTTATCTAAGCATAGCCATATAGG ATTATAGGCATATATAGCTTGTAAGTTGTATGAAATATTCGGTATAGTATTGTATGGAAAATAAATCAATTTTGTAATCA ATGCACCATAATTTTAGACTTTGTAATAATATTTGAGACAACAAGCTTAGTTACTCTTATGGACAATCCTACCAGCAAGC AGGAAATTGGTTCATCTTTGATGACATTATTAATTTCCCCCTTCCTTTGGCTTTCTAAATCAGTTCTAGTTTCTGTCTAA AAGACACAATAATACTAATCATGCCTTCTGTATAAGAAAAAAGAACATACTGGTATTTAATTATGAGAAGGTACCATCAA ACGCATAGATCAACTGCCTGAGATTGCTCTAGTTCATGGGAATGCATCTGTGTTAAATACTTGGTAGTGCCAGAAAATTA TGAGGAGGTTTTCTTGTTGTGCAAGTGTTGAAGTTTGAAGTGTACATAAACAATAATGAAATAATATTTGTG
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0309000.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGCAGACAAACAAAGAGAAGCAAAGAGAAATGGAAGCCCTTTCTAACATACGTTCCCCTTCACTACTCACAGCTCCTTT GGATACCCAGGTGCTTTCAAAGCAGAGGAAGCATAAATCTCCACACAGTTTCATGGTTCCTTCAAACATCTCTGTCAGGC TTAGCAAAATCTGTTGTACACTGTCAGAAAGTGAGATTGAGGAGAACCCCACAAGCAAGAGTGCCCCTAAATCCAAGGAC AGGATGGAGGACTACAATACAGCTATGAAGAGGATGATGAGGAGCCCTTATGAGTATCACCACGATCTGGGTATGAATTA CACACTTATAACTGAGAATTTGATTGTGGGATCCCAACCACAGAAACCTGAAGATCTGGATCATCTTAAAAAGGAAGAAG GTGTGGCATACATTCTAAACTTGCAGCAGGATAAGGATGTTGAATATTGGGGAATAGACTTGCAGTCAATAATAAGACGA TGTCGTGAACTTGAAATTAGGCACATGAGGAGGCCGGCAGTAGACTTTGATCCAAACTCCTTACGAGGTGCACTACCTAA AGCAGTCTCATCCTTAGAATGGGCAATTTCTGAGGGAAAAGGAAAAGTTTATGTGCATTGTACAGCTGGACTTGGAAGAG CTCCGGCAGTGGCAATAGCTTATTTATTCTGGTTTTCTGGCATGAATCTAAATACAGCATATGATATGCTAACTTCAAAG AGACCTTGTGGACCAAATAAAAGAGCAATACGCGAAGCTACTTATGATTTGGCTAAGAATGATCCATGGAAGGAGCCATT TGAGAATCTTTCCGACCATGCTTTTGAGGATATTGCAGACTGGGAGAGGAACCTGATTCAAGATCGTATCCGCTCCCTTC GTGGAACTTAG
Download CDS Sequence

Protein sequence (LotjaGi1g1v0309000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MQTNKEKQREMEALSNIRSPSLLTAPLDTQVLSKQRKHKSPHSFMVPSNISVRLSKICCTLSESEIEENPTSKSAPKSKD RMEDYNTAMKRMMRSPYEYHHDLGMNYTLITENLIVGSQPQKPEDLDHLKKEEGVAYILNLQQDKDVEYWGIDLQSIIRR CRELEIRHMRRPAVDFDPNSLRGALPKAVSSLEWAISEGKGKVYVHCTAGLGRAPAVAIAYLFWFSGMNLNTAYDMLTSK RPCGPNKRAIREATYDLAKNDPWKEPFENLSDHAFEDIADWERNLIQDRIRSLRGT
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR46642:SF2
11 295 285 2.7E-144 –
PANTHER
PTHR46642
11 295 285 2.7E-144 –
Gene3D
G3DSA:3.90.190.10
89 296 208 1.2E-63
IPR029021
SUPERFAMILY
SSF52799
104 249 146 1.77E-27
IPR029021
CDD
cd14526
105 251 147 1.2526E-80 –
ProSiteProfiles
PS50054
106 246 141 18.637
IPR020422
SMART
SM00195
106 256 151 8.0E-8
IPR020422
Pfam
PF00782
127 247 121 4.4E-16
IPR000340
ProSiteProfiles
PS50056
183 242 60 11.932
IPR000387

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0006470
Biological process Protein dephosphorylation The process of removing one or more phosphoric residues from a protein.
Subterm of
GO:0008138
Molecular function Protein tyrosine/serine/threonine phosphatase activity Catalysis of the reactions: protein serine + H2O = protein serine + phosphate; protein threonine phosphate + H2O = protein threonine + phosphate; and protein tyrosine phosphate + H2O = protein tyrosine + phosphate.
Subterm of
GO:0016311
Biological process Dephosphorylation The process of removing one or more phosphoric (ester or anhydride) residues from a molecule.
Subterm of
GO:0016791
Molecular function Phosphatase activity Catalysis of the hydrolysis of phosphoric monoesters, releasing inorganic phosphate.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0309000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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